BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13968.1
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330120 jgi|Araly1|330120|fgenesh1_pm.C_scaffold_7002347 320 3e-87
> Ahg330120 jgi|Araly1|330120|fgenesh1_pm.C_scaffold_7002347
Length=270
Score = 320 bits (173), Expect = 3e-87
Identities = 244/276 (88%), Gaps = 14/276 (5%)
Strand=Plus/Plus
Query 1 ATGGGATTCAAGAATAATTT-ATCTCTTGTATCGGTGATGGTCTTTGCTCTTATCCTTCT 59
||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGGGATTCAAGAAT-ATTTCATCTCTTGTATCGGTGATGGTCTTTGCTCTTATCGTTCT 59
Query 60 CCCCATGATTTCTGGACAAACCATGCAATGTTACTCAGGAATAGCATGTACAGACGACGG 119
||||||||||| ||||||| ||||||||||| |||||||||||||||||| || || |
Sbjct 60 ACCCATGATTTCAGGACAAAACATGCAATGTTTTTCAGGAATAGCATGTACAAAC-ACAG 118
Query 120 G-ACATGCAATGATTATTGCAATCCTAGAAATAACAACTTAGGAGGTGTTTGTCTTCGTC 178
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 119 ATACATGCAATGATTATTGCAAACCTAGAAATAACAACTTAGGAGGGGTTTGTCTT-GTT 177
Query 179 GCGC-T-AACTGTTGTTGCTGCTACGTTAG-TGTCGTCAAATCTCAAGAGTCTTCC-TTA 234
| || | ||||||||||||||||| ||| | ||||| | ||||||||||||||||| ||
Sbjct 178 G-GCCTCAACTGTTGTTGCTGCTATGTT-GCTGTCGCCGAATCTCAAGAGTCTTCCATT- 234
Query 235 TCCAAGGATA-CGAATAATGTATTCATTACTAATTA 269
|| ||| ||| | ||||||||||| |||||||||||
Sbjct 235 TCTAAGAATAAC-AATAATGTATTAATTACTAATTA 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9432500467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5