BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13980.1
Length=1721
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493513 jgi|Araly1|493513|fgenesh2_kg.7__2946__AT4G13980.1 2536 0.0
> Ahg493513 jgi|Araly1|493513|fgenesh2_kg.7__2946__AT4G13980.1
Length=1691
Score = 2536 bits (1373), Expect = 0.0
Identities = 1576/1670 (94%), Gaps = 30/1670 (2%)
Strand=Plus/Plus
Query 1 ACGGCAAAGGATCTCTCTCTTTCCCAGCATCACCATCTCTTGTACCAGTTTCTGATTAGA 60
||||| ||||| |||||| |||| ||||||||||||| || |||||||||||||||
Sbjct 1 ACGGCTAAGGA--TCTCTC--GCCCACCATCACCATCTCTCGTTGCAGTTTCTGATTAGA 56
Query 61 TTCAACAATGAACGGCGCATTAGGTAACTCCTCCGCCTCCGTTAGCGGCGGAGAAGGAGC 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 57 TTCAACAATGAACGGCGCATTAGGTAACTCCTCCGCCTCCGTGAGCGGCGGAGAAGGTGC 116
Query 121 CGGAGGACCAGCGCCTTTCTTGGTGAAA-ACCTACGAGATGGTCGACGATTCATCAACGG 179
||||||||| || ||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 117 CGGAGGACCTGCTCCTTTCTTGGT-AAAGACCTACGAGATGGTCGACGATTCATCAACGG 175
Query 180 ACCAGATCGTATCGTGGAGCGCTAACAACAACAGCTTCATCGTTTGGAATCATGCCGAAT 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 176 ACCAGATTGTATCGTGGAGCGCTAACAACAACAGCTTCATCGTTTGGAATCATGCGGAAT 235
Query 240 TTTCACGCCTCCTTCTTCCAACCTACTTCAAACACAATAACTTCTCTTCCTTCATTCGTC 299
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 236 TTTCACGCCTTCTTCTTCCAACCTACTTCAAGCACAATAACTTCTCTTCCTTCATTCGTC 295
Query 300 AGCTCAATACCTATGGGTTTAGGAAGATTGATCCAGAGAGGTGGGAGTTTTTGAATGATG 359
||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||
Sbjct 296 AGCTCAATACCTATGGGTTCAGAAAGATTGATCCCGAGAGGTGGGAATTTTTGAATGATG 355
Query 360 ATTTTATTAAGGATCAGAAGCATCTTCTCAAGAATATACATAGAAGGAAACCTATACACA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ATTTTATTAAGGATCAGAAGCATCTTCTCAAGAATATACATAGAAGGAAACCTATACACA 415
Query 420 GCCACAGTCATCCACCTGCTTCGTCGACTGATCAAGAAAGAGCAGTGTTGCAAGAGCAAA 479
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 416 GCCACAGTCATCCACCTGCTTCGTCGACAGATCAAGAAAGAGCAGTGTTGCAAGAGCAAA 475
Query 480 TGGACAAGCTTTCACGTG-AGAAAGCTGCAATTGAAGCTAAGCTTTTAAAGTTCAAACAA 538
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 476 TGGACAAGCTTTCACGTGCA-AAAGCTGCGATTGAAGCTAAGCTTTTAAAGTTCAAACAA 534
Query 539 CAGAAGGTTGTAGCAAAGCATCAGTTTGAAGAAATGACTGAGCATGTTGATGATATGGAG 598
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 535 CAGAAGGCTGTAGCAAAGCATCAGTTTGAGGAAATGACTGAGCATGTTGATGATATGGAG 594
Query 599 AATAGGCAGAAGAAGCTGCTGAATTTTTTGGAAACTGCGATTCGGAATCCTACTTTTGTT 658
|| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 595 AAGAGGCAGAAGAAGCTGCTGAATTTCTTGGAAACGGCAATTCGGAATCCTACTTTTGTT 654
Query 659 AAGAATTTTGGTAAG-AAAGTCGAGCAGTTGGATATTTCAGCTTACAACAAAAAGCGAAG 717
||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 655 AAGAATTTTGGCC-GTAAAGTCGAGCAATTGGATATTTCAGCTTACAATAAAAAGCGAAG 713
Query 718 GCTCCCTGAAGTTGAGCAATCAAAGCCACCTTCAGAAGATTCTCATCTGGATAATAGTAG 777
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 714 GATCCCTGAAGTTGAGCAATCAAAGCCACCTTCAGAAGATTCTCATCTGGATAATAGCAG 773
Query 778 TGGTAGCTCGAGACGCGAGTCTGGAAACATTTTTCATCAAAATTTCTCTAATAAATTGCG 837
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 774 TGGTAGCTCGAGACGCGAGTCTGGAAACATTTTCCATCAAAATTTCTCTAATAAATTGCG 833
Query 838 ACTAGAGCTTTCTCCAGCTGATTCAGATATGAACATGGTTTCACACAGTATACAAAGTTC 897
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 834 ACTAGAGCTTTCTCCAGCTGTTTCAGATATGAACATGGTTTCACACAGTATACAAAGTTC 893
Query 898 CAATGAAGAAGGTGCGAGTCCCAAAGGGATACTGTCAGGAGGTGATCCAAATACTACACT 957
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 894 CAATGAAGAAGGTGCGAGTCCCAAAGGGATACTGTCAGGAGGTGATCCAAACACTACACT 953
Query 958 AACAAAAAGAGAAGGCCTACCATTTGCACCTGAAGCTCTAGAGCTTGCGGATACCGGGAC 1017
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 954 AACAAGAAGAGAAGGCCTACCATTTGCACCTGAAGCACTAGAGCTTGCGGATACCGGGAC 1013
Query 1018 ATGCCCGAGGAGATTACTGTTAAATGATAATACAAGGGTGGAGACCTTGCAGCAGAGGCT 1077
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1014 ATGCCCGAGGAGATTACTGTTAAATGACAATACAAGAGTGGAGACCTTGCAGCAGAGGCT 1073
Query 1078 AACTTCTTCAGAGGAGACTGATGGTAGCTTTTCATGTCATTTAAATCTAACCCTGGCTTC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 AACTTCTTCAGAGGAGACTGATGGTAGCTTTTCATGTCATTTAAATCTAACCCTGGCTTC 1133
Query 1138 TGCTCCGTTACCGGACAAAACAGCTTCACAGATAGCTAAGACGACTCTTAAAAGTCAGGA 1197
|||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1134 TGCTCCATTACCGGAGAAGACCGCTTCGCAGATAGCTAAGACGACTCTTAAAAGTCAGGA 1193
Query 1198 GTTAAACTTTAACTCAATAGAAACAAGTGCAAGTGAGAAAAATCGGGGTAGACAAGAGAT 1257
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1194 GTTAAACTTCAACTCAATAGAAACAAGTGCAAGTGAGAAAAATCGGGGTAGACAAGAGGT 1253
Query 1258 TGCAGTTGGAGGTAGCCAAGCAAATGCAGCTCCTCCAGCAAGAGTGAATGATGTATTCTG 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TGCAGTTGGAGGTAGCCAAGCAAATGCAGCTCCTCCAGCAAGAGTGAATGATGTATTCTG 1313
Query 1318 GGAACAGTTCCTAACAGAAAGGCCAGGGTCTTCAGATAATGAGGAGGCAAGTTCGACTTA 1377
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1314 GGAACAGTTCTTAACAGAAAGGCCGGGGTCTTCAGATAATGAGGAGGCAAGTTCGACTTA 1373
Query 1378 TAGAGGTAACCCATACGAAGAGCAAGAGGAGAAAAGAAACGGGAGTATGATGTTACGTAA 1437
||||||||||||| |||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 1374 TAGAGGTAACCCAGACGAAGAGCAAGAGGAGAGAAGAAACGGGAATATGATGTCACGTAA 1433
Query 1438 TACAAAGAATATCGAGCAGCTGACCTTATAAACTATTTGGACGGTTACATCAACGAGAGT 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TACAAAGAATATCGAGCAGCTGACCTTATAAACTATTTGGACGGTTACATCAACGAGAGT 1493
Query 1498 AC--GAACTGTGGTTTTGGTAAGAAGTATG------GG-TGAGTAAGTAATGAAACATTG 1548
| | ||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1494 ATATGGTCTGTGGTTTTGGTAAGAAGTAAGAACTATGGCTGAGTAAGTAATGAAACATTG 1553
Query 1549 GACTGAAAAAGCGTAAGTAGCTTTGTTGTAAACACTTGCGTCTCTGTCTACACAAGTAAT 1608
|||||||||||||||||||||||||||||||| || | | | | ||||||||
Sbjct 1554 GACTGAAAAAGCGTAAGTAGCTTTGTTGTAAA---TT---TA-CA--CAAT-CAAGTAAT 1603
Query 1609 TTGACTGTAAATGTAAGTGTACAGGATTT-AAATTGAATAAGCAtttttt 1657
|||||||||| | |||||| | ||||||| ||||||||||||||||||||
Sbjct 1604 TTGACTGTAATTTTAAGTGCATAGGATTTTAAATTGAATAAGCATTTTTT 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64562965275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5