BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13990.1
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947019 jgi|Araly1|947019|scaffold_703248.1 2508 0.0
> Ahg947019 jgi|Araly1|947019|scaffold_703248.1
Length=1614
Score = 2508 bits (1358), Expect = 0.0
Identities = 1517/1594 (95%), Gaps = 10/1594 (1%)
Strand=Plus/Plus
Query 1 ATGCGACCCAAGAATTATTCTCAGATGGAGAAACCCATCTCCATCACGACGGGGAAGTT- 59
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 22 ATGCGACCCAAGAATTATTCTCAGATGGAGAAACCCATCTCCATCGCCACGGGGAAGTTC 81
Query 60 --T-CGGAC--CAACAACAACAACAATCATAACAATGTCTGGTTCGTTGTTCCACTCTTC 114
| | || ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 82 CGTACCAACAACAACAACAACAACAACCATAACAATGTCTGGTTCGTTGTTCCACTCTTC 141
Query 115 TTTATCCTCTGTTTCGTTCTCCTCTGTTTCGACTACTCTGCTCTCTTCACCGACACAGAC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 TTTATCCTCTGTTTCGTTCTCCTCTGTTTCGACTACTCTGCTCTCTTCACCGACACAGAC 201
Query 175 GAAACCGCTTTCTCAATTCCCGACGTTACCCAGAAATCAACATCCTCTGAATTCACGAAA 234
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 202 GAAACCGCTTTCTCAATTCCTGACGTTACCCAGAAATCAACTTCCTCTGAATTCACCAAA 261
Query 235 GATGACAACTTTTCTCGATTTCCCGACGACCCATCTCCTGATTCTTCCTGCTCCGGTCGG 294
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 262 GATGACAACTTTTCTCGATTTCTCGACGACCCATCTCCTGATTCTTCTTGCTCCGGTCGG 321
Query 295 TATATTTACGTTCATGAACTTCCGTATAGATTCAATGGTGATTTGCTTGATAATTGCTTT 354
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 322 TATATTTACGTTCATGAACTTCCTTATAGATTCAATGGTGAATTGCTTGATAATTGTTTT 381
Query 355 AAGATTACTAGAGGAACCGAGAAAGATATTTGTCCTTACATCGAAAACTATGGTTTTGGT 414
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 382 AAGATTACTAGAGGAACCGAGAAGGATATTTGTCCTTATATCGAAAACTATGGTTTTGGT 441
Query 415 CCTGTCATTAAGAATTACGAGAATGTGTTGTTGAAACAAAGTTGGTTTACGACCAATCAG 474
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 442 CCTGTGATTAAGAATTACGAGAATGTGTTGTTGAAACATAGTTGGTTTACGACGAATCAG 501
Query 475 TTCATGCTCGAGGTGATATTCCACAACAAGATGATAAATTACAGATGTTTGACTAATGAT 534
|| ||||| |||||||| ||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 502 TTTATGCTTGAGGTGATTTTCCACAACAAGATGATGAATTACAGGTGTTTGACCAATGAT 561
Query 535 TCGTCACTAGCGTCTGCGGTTTTCGTGCCGTTTTACGCAGGTCTTGATATGAGTAGGTAT 594
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 TCGTCTCTAGCTTCTGCGGTTTTCGTGCCGTTTTACGCAGGTCTTGATATGAGTAGGTAT 621
Query 595 CTTTGGGGTTTCAACATTACGGTTAGAGATTCTTCGTCTCATGAGCTGATGGATTGGCTT 654
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 622 CTTTGGGGTTTCAACATTTCGGTTAGAGATTCTTCGTCTCATGAGCTGATGAATTGGCTT 681
Query 655 GTGGTACAGAAAGAGTGGGGTCGAATGTCTGGTAGAGACCATTTCTTGGTTTCAGGAAGG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 GTGGTACAGAAAGAGTGGGGTCGAATGTCTGGTAGAGACCATTTCTTGGTTTCAGGAAGG 741
Query 715 ATTGCTTGGGATTTCAGGAGACAGACTGATAACGAATCTGATTGGGGAAGCAAGCTTCGG 774
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 742 ATTGCTTGGGATTTCAGGAGACAGACTGATAATGAATCTGATTGGGGAAGCAAGCTTAGG 801
Query 775 TTCTTACCCGAGTCGCGGAACATGTCGATGTTGTCCATCGAATCGAGTTCTTGGAAGAAT 834
|||||||| |||||||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct 802 TTCTTACCGGAGTCGCGAAACATGTCGATGTTGTCTATTGAATCGAGTTCATGGAAGAAC 861
Query 835 GATTACGCTATTCCGTATCCGACTTGTTTCCATCCAAGATCAGTGGATGA-GATTGTGGA 893
|||||||||||||||||||| || ||||||||||| |||||||||||||| | |||||||
Sbjct 862 GATTACGCTATTCCGTATCCAACCTGTTTCCATCCTAGATCAGTGGATGAAG-TTGTGGA 920
Query 894 GTGGCAGGAGCTAATGAGGTCTCGAAAACGCGAGTATCTATTCACCTTTGCGGGTGCTCC 953
|||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||||||
Sbjct 921 GTGGCAAGAGCTAATGAGGTCTCAAAAACGGGAGTATCTATTTACCTTTGCGGGTGCTCC 980
Query 954 AAGGCCTGAATATAAAGACTCGGTTCGAGGGAAGATTATAGATGAGTGTTTGGAGTCAAA 1013
||||||||||||||||||||| |||||||||||||| || ||||| |||||||| |||||
Sbjct 981 AAGGCCTGAATATAAAGACTCAGTTCGAGGGAAGATCATTGATGAATGTTTGGAATCAAA 1040
Query 1014 GAAGCAATGTTACTTGCTAGACTGTAACTATGGGAATGTGAATTGTGACAACCCTGTCAA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 GAAGCAATGTTACTTGCTAGACTGTAACTATGGGAATGTGAATTGTGACAACCCTGTCAA 1100
Query 1074 TGTGATGAAGGTTTTCAGGAACTCGGTGTTTTGTCTTCAGCCACCGGGTGATTCTTACAC 1133
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1101 TGTGATGAAGGTTTTCAGGAACTCGGTGTTTTGTCTCCAGCCACCGGGAGATTCTTACAC 1160
Query 1134 TAGAAGGTCAATGTTTGATTCAATATTGGCAGGCTGCATTCCGGTGTTCTTCCATCCAGG 1193
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TAGAAGGTCAATGTTTGATTCGATATTGGCAGGCTGCATTCCGGTGTTCTTCCATCCAGG 1220
Query 1194 GACAGCGTACGCTCAATACAAGTGGCATTTGCCCAAGAATCACTCGAGTTACTCGGTTTA 1253
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1221 GACAGCGTACGCTCAATACAAGTGGCATTTGCCCAAGAACCACTCGAGTTACTCGGTTTA 1280
Query 1254 TCTACCGGTTAAGGATGTGAAGGAGTGGAATATCAAAATCAAGGAGAGGTTGATTGAGAT 1313
||||||||| |||||||| |||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1281 TCTACCGGTAAAGGATGTAAAGGAGTGGAATATCATAATCAGGGAGAGGTTGATTGAGAT 1340
Query 1314 TCCAGAGGAAAGAGTGGTGAGGTTGAGAGAAGAGGTTATAAGGTTGATACCGAAGGTTGT 1373
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1341 TCCAGAAGAAAGAGTGGTGAGATTGAGAGAAGAGGTTATAAGGTTGATACCGAAGGTGGT 1400
Query 1374 CTACGCTGATCCGAAGTACGGATCGGATGGGAGTGAAGATGCATTTGAGTTGGCTGTGAA 1433
|||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1401 CTACGCTGATCCGAAGTATGGATCGGATGGGAATGAAGATGCATTTGAGCTGGCTGTGAA 1460
Query 1434 GGGAATGTT-GGAGAGGATTGAAGAAGTGAGAGAGATGATGAGACAAGGGAAAGATGGTA 1492
||||||||| || || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1461 GGGAATGTTAGG-GAAGATTCAAGAAGTGAGAGAGATGATGAGACAAGGGAAAGATGGTA 1519
Query 1493 GTGATGGGTTTGATGATAGAGATGATTATAAGTATACTTTTTCTCCATATGAAGAACCTC 1552
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1520 GTGATGGGTTTGATGATAGAGATGATTATAAATATACTTTTTCTCCATATGAAGAACCTC 1579
Query 1553 AAGTTTTGGCTTAAAGTGGAAAATATGTCATTAT 1586
|||||||||| ||||||||||||| |||||||||
Sbjct 1580 AAGTTTTGGCATAAAGTGGAAAATGTGTCATTAT 1613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63801160375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5