BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13990.1 Length=1701 Score E Sequences producing significant alignments: (Bits) Value Ahg947019 jgi|Araly1|947019|scaffold_703248.1 2508 0.0 > Ahg947019 jgi|Araly1|947019|scaffold_703248.1 Length=1614 Score = 2508 bits (1358), Expect = 0.0 Identities = 1517/1594 (95%), Gaps = 10/1594 (1%) Strand=Plus/Plus Query 1 ATGCGACCCAAGAATTATTCTCAGATGGAGAAACCCATCTCCATCACGACGGGGAAGTT- 59 ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 22 ATGCGACCCAAGAATTATTCTCAGATGGAGAAACCCATCTCCATCGCCACGGGGAAGTTC 81 Query 60 --T-CGGAC--CAACAACAACAACAATCATAACAATGTCTGGTTCGTTGTTCCACTCTTC 114 | | || ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 82 CGTACCAACAACAACAACAACAACAACCATAACAATGTCTGGTTCGTTGTTCCACTCTTC 141 Query 115 TTTATCCTCTGTTTCGTTCTCCTCTGTTTCGACTACTCTGCTCTCTTCACCGACACAGAC 174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 142 TTTATCCTCTGTTTCGTTCTCCTCTGTTTCGACTACTCTGCTCTCTTCACCGACACAGAC 201 Query 175 GAAACCGCTTTCTCAATTCCCGACGTTACCCAGAAATCAACATCCTCTGAATTCACGAAA 234 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| Sbjct 202 GAAACCGCTTTCTCAATTCCTGACGTTACCCAGAAATCAACTTCCTCTGAATTCACCAAA 261 Query 235 GATGACAACTTTTCTCGATTTCCCGACGACCCATCTCCTGATTCTTCCTGCTCCGGTCGG 294 |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 262 GATGACAACTTTTCTCGATTTCTCGACGACCCATCTCCTGATTCTTCTTGCTCCGGTCGG 321 Query 295 TATATTTACGTTCATGAACTTCCGTATAGATTCAATGGTGATTTGCTTGATAATTGCTTT 354 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| Sbjct 322 TATATTTACGTTCATGAACTTCCTTATAGATTCAATGGTGAATTGCTTGATAATTGTTTT 381 Query 355 AAGATTACTAGAGGAACCGAGAAAGATATTTGTCCTTACATCGAAAACTATGGTTTTGGT 414 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 382 AAGATTACTAGAGGAACCGAGAAGGATATTTGTCCTTATATCGAAAACTATGGTTTTGGT 441 Query 415 CCTGTCATTAAGAATTACGAGAATGTGTTGTTGAAACAAAGTTGGTTTACGACCAATCAG 474 ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 442 CCTGTGATTAAGAATTACGAGAATGTGTTGTTGAAACATAGTTGGTTTACGACGAATCAG 501 Query 475 TTCATGCTCGAGGTGATATTCCACAACAAGATGATAAATTACAGATGTTTGACTAATGAT 534 || ||||| |||||||| ||||||||||||||||| |||||||| |||||||| |||||| Sbjct 502 TTTATGCTTGAGGTGATTTTCCACAACAAGATGATGAATTACAGGTGTTTGACCAATGAT 561 Query 535 TCGTCACTAGCGTCTGCGGTTTTCGTGCCGTTTTACGCAGGTCTTGATATGAGTAGGTAT 594 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 562 TCGTCTCTAGCTTCTGCGGTTTTCGTGCCGTTTTACGCAGGTCTTGATATGAGTAGGTAT 621 Query 595 CTTTGGGGTTTCAACATTACGGTTAGAGATTCTTCGTCTCATGAGCTGATGGATTGGCTT 654 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 622 CTTTGGGGTTTCAACATTTCGGTTAGAGATTCTTCGTCTCATGAGCTGATGAATTGGCTT 681 Query 655 GTGGTACAGAAAGAGTGGGGTCGAATGTCTGGTAGAGACCATTTCTTGGTTTCAGGAAGG 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 682 GTGGTACAGAAAGAGTGGGGTCGAATGTCTGGTAGAGACCATTTCTTGGTTTCAGGAAGG 741 Query 715 ATTGCTTGGGATTTCAGGAGACAGACTGATAACGAATCTGATTGGGGAAGCAAGCTTCGG 774 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 742 ATTGCTTGGGATTTCAGGAGACAGACTGATAATGAATCTGATTGGGGAAGCAAGCTTAGG 801 Query 775 TTCTTACCCGAGTCGCGGAACATGTCGATGTTGTCCATCGAATCGAGTTCTTGGAAGAAT 834 |||||||| |||||||| ||||||||||||||||| || ||||||||||| |||||||| Sbjct 802 TTCTTACCGGAGTCGCGAAACATGTCGATGTTGTCTATTGAATCGAGTTCATGGAAGAAC 861 Query 835 GATTACGCTATTCCGTATCCGACTTGTTTCCATCCAAGATCAGTGGATGA-GATTGTGGA 893 |||||||||||||||||||| || ||||||||||| |||||||||||||| | ||||||| Sbjct 862 GATTACGCTATTCCGTATCCAACCTGTTTCCATCCTAGATCAGTGGATGAAG-TTGTGGA 920 Query 894 GTGGCAGGAGCTAATGAGGTCTCGAAAACGCGAGTATCTATTCACCTTTGCGGGTGCTCC 953 |||||| |||||||||||||||| |||||| ||||||||||| ||||||||||||||||| Sbjct 921 GTGGCAAGAGCTAATGAGGTCTCAAAAACGGGAGTATCTATTTACCTTTGCGGGTGCTCC 980 Query 954 AAGGCCTGAATATAAAGACTCGGTTCGAGGGAAGATTATAGATGAGTGTTTGGAGTCAAA 1013 ||||||||||||||||||||| |||||||||||||| || ||||| |||||||| ||||| Sbjct 981 AAGGCCTGAATATAAAGACTCAGTTCGAGGGAAGATCATTGATGAATGTTTGGAATCAAA 1040 Query 1014 GAAGCAATGTTACTTGCTAGACTGTAACTATGGGAATGTGAATTGTGACAACCCTGTCAA 1073 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1041 GAAGCAATGTTACTTGCTAGACTGTAACTATGGGAATGTGAATTGTGACAACCCTGTCAA 1100 Query 1074 TGTGATGAAGGTTTTCAGGAACTCGGTGTTTTGTCTTCAGCCACCGGGTGATTCTTACAC 1133 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 1101 TGTGATGAAGGTTTTCAGGAACTCGGTGTTTTGTCTCCAGCCACCGGGAGATTCTTACAC 1160 Query 1134 TAGAAGGTCAATGTTTGATTCAATATTGGCAGGCTGCATTCCGGTGTTCTTCCATCCAGG 1193 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1161 TAGAAGGTCAATGTTTGATTCGATATTGGCAGGCTGCATTCCGGTGTTCTTCCATCCAGG 1220 Query 1194 GACAGCGTACGCTCAATACAAGTGGCATTTGCCCAAGAATCACTCGAGTTACTCGGTTTA 1253 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1221 GACAGCGTACGCTCAATACAAGTGGCATTTGCCCAAGAACCACTCGAGTTACTCGGTTTA 1280 Query 1254 TCTACCGGTTAAGGATGTGAAGGAGTGGAATATCAAAATCAAGGAGAGGTTGATTGAGAT 1313 ||||||||| |||||||| |||||||||||||||| ||||| |||||||||||||||||| Sbjct 1281 TCTACCGGTAAAGGATGTAAAGGAGTGGAATATCATAATCAGGGAGAGGTTGATTGAGAT 1340 Query 1314 TCCAGAGGAAAGAGTGGTGAGGTTGAGAGAAGAGGTTATAAGGTTGATACCGAAGGTTGT 1373 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1341 TCCAGAAGAAAGAGTGGTGAGATTGAGAGAAGAGGTTATAAGGTTGATACCGAAGGTGGT 1400 Query 1374 CTACGCTGATCCGAAGTACGGATCGGATGGGAGTGAAGATGCATTTGAGTTGGCTGTGAA 1433 |||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||| Sbjct 1401 CTACGCTGATCCGAAGTATGGATCGGATGGGAATGAAGATGCATTTGAGCTGGCTGTGAA 1460 Query 1434 GGGAATGTT-GGAGAGGATTGAAGAAGTGAGAGAGATGATGAGACAAGGGAAAGATGGTA 1492 ||||||||| || || |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1461 GGGAATGTTAGG-GAAGATTCAAGAAGTGAGAGAGATGATGAGACAAGGGAAAGATGGTA 1519 Query 1493 GTGATGGGTTTGATGATAGAGATGATTATAAGTATACTTTTTCTCCATATGAAGAACCTC 1552 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1520 GTGATGGGTTTGATGATAGAGATGATTATAAATATACTTTTTCTCCATATGAAGAACCTC 1579 Query 1553 AAGTTTTGGCTTAAAGTGGAAAATATGTCATTAT 1586 |||||||||| ||||||||||||| ||||||||| Sbjct 1580 AAGTTTTGGCATAAAGTGGAAAATGTGTCATTAT 1613 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63801160375 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5