BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14000.1
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493511 jgi|Araly1|493511|fgenesh2_kg.7__2944__AT4G14000.1 1559 0.0
> Ahg493511 jgi|Araly1|493511|fgenesh2_kg.7__2944__AT4G14000.1
Length=1112
Score = 1559 bits (844), Expect = 0.0
Identities = 978/1042 (94%), Gaps = 12/1042 (1%)
Strand=Plus/Plus
Query 68 TCTTCTCAAGGTTCTGGTCTAGGTTTAGGGTTCCTTGATTCATCAGAGCCAGCTCTTCCT 127
||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 58 TCTTCACAAGGTTCTGGTCTAGATTTAGGGTTCCTTGATTCACCAGAGCCAGCTCTTCCT 117
Query 128 CCACCTCCTCCTCCTGTTGAAGTATTATCCTTCGAGGTGTCTTCCTCCACT-GATTTCGA 186
||||| ||||||||||||||||||||||||| |||||| ||||||||| | ||||||||
Sbjct 118 CCACCGCCTCCTCCTGTTGAAGTATTATCCTCCGAGGTATCTTCCTCC-GTCGATTTCGA 176
Query 187 AGTGGATAAATTGACTATCGGCGAGATCACTCTTTTGAAGGGTCGTGTGAGCACTAAAGA 246
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AGTGGATAAAGTGATTATCGGCGAGATCACTCTTTTGAAGGGTCGTGTGAGCACTAAAGA 236
Query 247 GGTTTTTGGATTGCCTAATTCAGATTTGGTTCCTGGAGTCTATGAAGGCGGGCTTAAGCT 306
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GGTCTTTGGATTGCCTAATTCAGATTTGGTTCCTGGAGTCTATGAAGGCGGGCTTAAGCT 296
Query 307 TTGGGAAGGATCGATTGATCTTGTTAAAGCTCTTGAGAAAGAATCACAAACCGGAAACTT 366
|||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 297 TTGGGAAGGATCAATTGATCTTGTCAAAGCTCTTGAAAAAGAATCACAAACTGGAAACTT 356
Query 367 ATCATTTTCCGGAAAGCGGGTTCTCGAGCTTGGATGTGGTCATGCACTTCCAGGAATCTA 426
|||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ATCACTCTCTGGAAAGCGGGTTCTCGAGCTTGGATGTGGTCATGCACTTCCAGGAATCTA 416
Query 427 TGCGTGTCTCAAGGGTTCAGATG-CTGTTCATTTCCAGGACTTCAATGCTGAGGTTCTTC 485
||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||
Sbjct 417 TGCGTGTCTCAAGGGTTCAGATGTC-GTCCATTTCCAGGACTTCAATGCTGAGGTCCTTC 475
Query 486 GATGTCTCACCATTCCGAATCTGAATGCTAATCTGTCTGAGAAGTCTTCCTCTGTCTCAG 545
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 476 GATGTCTCACCATTCCGAATCTAAATGCTAATCTGTCCGAGAAGTCTTCCTCTGTCTCAG 535
Query 546 TAAGTGAAACAGAAGTACGCTTCTTTGCTGGTGAGTGGAGTGAAGTTCATCAGGTTCTTC 605
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 536 TAGGTGAAACAGAAGTACGCTTCTTCGCTGGTGAGTGGAGTGAAGTTCATCAGGTTCTTC 595
Query 606 CACTAGTTAATAGTGATGGTGAGACTAATAAGAAGGGTGGTTATGACATCATTCTAATGG 665
||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 596 CACTAGTTAATAGAGATGGTGAGACTAATAAGAAGGGTGGTTATGACGTCATTTTAATGG 655
Query 666 CTGAGACGATATATTCCATCTCCGCTCAGAAAAGTCAATATGAATTGATTAAAAGGTGTC 725
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 656 CTGAGACGATATATTCCATCTCCGCTCAGAAAAGTCTCTATCAATTGATTAAAAGGTGCC 715
Query 726 TGGCGTATCCTGATGGAGCAGTGTATATGGCTGCAAAGAAGTACTATTTCGGGGTCGGTG 785
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 716 TGGCGTATCCTGATGGAGCAGTGTATATGGCTGCAAAGAAATACTATTTCGGGGTTGGTG 775
Query 786 GAGGGACAAGGCAATTCTTGTCTATGATAGAGAAAGACGGTGCTCTTGCTTCAACGTTGG 845
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 776 GAGGGACAAGGCAGTTCTTGTCTATGATAGAGAAAGACGGTGCTCTTGCTTCAACATTGG 835
Query 846 TGTCTCAAGTCACAGATGGTTCCTCAAATGTCAGAGAGGTATGGAAGCTTTCGTACAAGT 905
|| || ||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 836 TGGCTGAAGTCACAGATGGTTCCTCCAATGTCAGAGAGGTATGGAAGCTTTCCTACAAGT 895
Query 906 AAGTCGAAGCTATACTGGAATTCAGTGTCCAACGATCTGATTTTAGTGGATTTGGGTTGC 965
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 896 AAGTCAAAGCTCTACTGGAATTCAGTGTCCAACGATCCGATTTTAGTGGATTTGGGTTGC 955
Query 966 TCATAAAAATGAGTGGAAATTCAAAATCTCTCATCCATGTGTTTAGCTTATAGACTCTCC 1025
||||| || ||||| ||||||||||||||| |||||||| || |||||||||||||
Sbjct 956 TCATAGAA-TGAGTAGAAATTCAAAATCTC--ATCCATGT-TTG-GCTTATAGACTCTGT 1010
Query 1026 TGACTGTGTTATAATAATTGCTTAGTTTTTCATTTTGGTACATTTTCTGGCTTAACGAAA 1085
||||||||| | | |||| ||||||||||||| ||| ||||||||||| ||||||||||
Sbjct 1011 TGACTGTGT-A-A-TAATCGCTTAGTTTTTCACTTTAATACATTTTCTGACTTAACGAAA 1067
Query 1086 GGCTTATGTGATCTGCCGTTGA 1107
|||||||||||| |||||||||
Sbjct 1068 GGCTTATGTGATATGCCGTTGA 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014360819
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5