BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14000.1 Length=1232 Score E Sequences producing significant alignments: (Bits) Value Ahg493511 jgi|Araly1|493511|fgenesh2_kg.7__2944__AT4G14000.1 1559 0.0 > Ahg493511 jgi|Araly1|493511|fgenesh2_kg.7__2944__AT4G14000.1 Length=1112 Score = 1559 bits (844), Expect = 0.0 Identities = 978/1042 (94%), Gaps = 12/1042 (1%) Strand=Plus/Plus Query 68 TCTTCTCAAGGTTCTGGTCTAGGTTTAGGGTTCCTTGATTCATCAGAGCCAGCTCTTCCT 127 ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 58 TCTTCACAAGGTTCTGGTCTAGATTTAGGGTTCCTTGATTCACCAGAGCCAGCTCTTCCT 117 Query 128 CCACCTCCTCCTCCTGTTGAAGTATTATCCTTCGAGGTGTCTTCCTCCACT-GATTTCGA 186 ||||| ||||||||||||||||||||||||| |||||| ||||||||| | |||||||| Sbjct 118 CCACCGCCTCCTCCTGTTGAAGTATTATCCTCCGAGGTATCTTCCTCC-GTCGATTTCGA 176 Query 187 AGTGGATAAATTGACTATCGGCGAGATCACTCTTTTGAAGGGTCGTGTGAGCACTAAAGA 246 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 AGTGGATAAAGTGATTATCGGCGAGATCACTCTTTTGAAGGGTCGTGTGAGCACTAAAGA 236 Query 247 GGTTTTTGGATTGCCTAATTCAGATTTGGTTCCTGGAGTCTATGAAGGCGGGCTTAAGCT 306 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 GGTCTTTGGATTGCCTAATTCAGATTTGGTTCCTGGAGTCTATGAAGGCGGGCTTAAGCT 296 Query 307 TTGGGAAGGATCGATTGATCTTGTTAAAGCTCTTGAGAAAGAATCACAAACCGGAAACTT 366 |||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 297 TTGGGAAGGATCAATTGATCTTGTCAAAGCTCTTGAAAAAGAATCACAAACTGGAAACTT 356 Query 367 ATCATTTTCCGGAAAGCGGGTTCTCGAGCTTGGATGTGGTCATGCACTTCCAGGAATCTA 426 |||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 ATCACTCTCTGGAAAGCGGGTTCTCGAGCTTGGATGTGGTCATGCACTTCCAGGAATCTA 416 Query 427 TGCGTGTCTCAAGGGTTCAGATG-CTGTTCATTTCCAGGACTTCAATGCTGAGGTTCTTC 485 ||||||||||||||||||||||| | || |||||||||||||||||||||||||| |||| Sbjct 417 TGCGTGTCTCAAGGGTTCAGATGTC-GTCCATTTCCAGGACTTCAATGCTGAGGTCCTTC 475 Query 486 GATGTCTCACCATTCCGAATCTGAATGCTAATCTGTCTGAGAAGTCTTCCTCTGTCTCAG 545 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 476 GATGTCTCACCATTCCGAATCTAAATGCTAATCTGTCCGAGAAGTCTTCCTCTGTCTCAG 535 Query 546 TAAGTGAAACAGAAGTACGCTTCTTTGCTGGTGAGTGGAGTGAAGTTCATCAGGTTCTTC 605 || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 536 TAGGTGAAACAGAAGTACGCTTCTTCGCTGGTGAGTGGAGTGAAGTTCATCAGGTTCTTC 595 Query 606 CACTAGTTAATAGTGATGGTGAGACTAATAAGAAGGGTGGTTATGACATCATTCTAATGG 665 ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 596 CACTAGTTAATAGAGATGGTGAGACTAATAAGAAGGGTGGTTATGACGTCATTTTAATGG 655 Query 666 CTGAGACGATATATTCCATCTCCGCTCAGAAAAGTCAATATGAATTGATTAAAAGGTGTC 725 |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | Sbjct 656 CTGAGACGATATATTCCATCTCCGCTCAGAAAAGTCTCTATCAATTGATTAAAAGGTGCC 715 Query 726 TGGCGTATCCTGATGGAGCAGTGTATATGGCTGCAAAGAAGTACTATTTCGGGGTCGGTG 785 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 716 TGGCGTATCCTGATGGAGCAGTGTATATGGCTGCAAAGAAATACTATTTCGGGGTTGGTG 775 Query 786 GAGGGACAAGGCAATTCTTGTCTATGATAGAGAAAGACGGTGCTCTTGCTTCAACGTTGG 845 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 776 GAGGGACAAGGCAGTTCTTGTCTATGATAGAGAAAGACGGTGCTCTTGCTTCAACATTGG 835 Query 846 TGTCTCAAGTCACAGATGGTTCCTCAAATGTCAGAGAGGTATGGAAGCTTTCGTACAAGT 905 || || ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 836 TGGCTGAAGTCACAGATGGTTCCTCCAATGTCAGAGAGGTATGGAAGCTTTCCTACAAGT 895 Query 906 AAGTCGAAGCTATACTGGAATTCAGTGTCCAACGATCTGATTTTAGTGGATTTGGGTTGC 965 ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 896 AAGTCAAAGCTCTACTGGAATTCAGTGTCCAACGATCCGATTTTAGTGGATTTGGGTTGC 955 Query 966 TCATAAAAATGAGTGGAAATTCAAAATCTCTCATCCATGTGTTTAGCTTATAGACTCTCC 1025 ||||| || ||||| ||||||||||||||| |||||||| || ||||||||||||| Sbjct 956 TCATAGAA-TGAGTAGAAATTCAAAATCTC--ATCCATGT-TTG-GCTTATAGACTCTGT 1010 Query 1026 TGACTGTGTTATAATAATTGCTTAGTTTTTCATTTTGGTACATTTTCTGGCTTAACGAAA 1085 ||||||||| | | |||| ||||||||||||| ||| ||||||||||| |||||||||| Sbjct 1011 TGACTGTGT-A-A-TAATCGCTTAGTTTTTCACTTTAATACATTTTCTGACTTAACGAAA 1067 Query 1086 GGCTTATGTGATCTGCCGTTGA 1107 |||||||||||| ||||||||| Sbjct 1068 GGCTTATGTGATATGCCGTTGA 1089 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46014360819 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5