BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G14010.1

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947013 jgi|Araly1|947013|scaffold_703242.1                        553    6e-157


> Ahg947013 jgi|Araly1|947013|scaffold_703242.1
Length=392

 Score =  553 bits (299),  Expect = 6e-157
 Identities = 353/378 (93%), Gaps = 7/378 (2%)
 Strand=Plus/Plus

Query  10   CACTTACAAAATGGAGATAAAACCCTCTAGGATATTCTCCACCATCACCATCTTCTTTC-  68
            |||| |||||||||||||||||||||||| ||| |||| |||||||||||||||| ||| 
Sbjct  11   CACTAACAAAATGGAGATAAAACCCTCTACGATCTTCTTCACCATCACCATCTTC-TTCG  69

Query  69   TCTGCCTTCTACTAGCACACGTCACCTCCAAGGCATCATCATCATCTCTGTGCAATGGAT  128
            ||||||||||  | ||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct  70   TCTGCCTTCT--T-GCACACGTCACCTCCAAGGCATCATCATCATCTATGTGTAATGGAT  126

Query  129  CTGTGGCGGAGTGCAGCAGCATGGTGGAGACAGAGGAAATGA-GTGTGATAATGGAGTCT  187
            | ||||| |||||||||| | ||||||||||||||||||||| | |||||||||||||||
Sbjct  127  CGGTGGCAGAGTGCAGCAACGTGGTGGAGACAGAGGAAATGACG-GTGATAATGGAGTCT  185

Query  188  TGGTCAAGCCAGAGGTTGACGGAGGAGCAGGCACATAAGCTTTCGTATGGAGCTTTGAGG  247
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  186  TGGTCAAGCCAGAGGTTGACGGAGGAGCAGGCGCATAAGCTTTCGTATGGAGCTTTGAGG  245

Query  248  AGGAATCAGCCTGCTTGCGATGGTGGTAAACGAGGCGAGTCTTACTCAACTCAATGTCTT  307
            |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct  246  AGGAATCAGCCTGCTTGCGACGGTGGTAAACGTGGCGAGTCTTACTCTACTCAATGTCTT  305

Query  308  CCTCCACCGTCTAACCCTTATAGTAGAGGCTGCTCTAAGCATTACCGATGCGGCCGTGAC  367
            ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  306  CCTCCGCCGTCTAATCCTTATAGTAGAGGCTGCTCTAAGCATTACCGATGCGGGCGTGAC  365

Query  368  TCTTGACCATTCACCATC  385
            |||||||||||||| |||
Sbjct  366  TCTTGACCATTCACAATC  383



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20069839814


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5