BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G14020.1

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493510 jgi|Araly1|493510|fgenesh2_kg.7__2943__AT4G14020.1         747    0.0  


> Ahg493510 jgi|Araly1|493510|fgenesh2_kg.7__2943__AT4G14020.1
Length=484

 Score =  747 bits (404),  Expect = 0.0
 Identities = 460/487 (94%), Gaps = 4/487 (1%)
 Strand=Plus/Plus

Query  18   AAGAAACATCAATCATGGAGTACTACACATTTACCGAAAACGACGAAGAACGTGTATCGA  77
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1    AAGAAACATCAAGCATGGAGTACTACACATTTACCGAAAACGACGAAGAACGTGTATCGC  60

Query  78   GAAATCATCACGTGAATAACACGTGGGTGAAAGAACGTTACGAGAGCGATGAAGAAGATG  137
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GAAATCATCACGTGAAGAACACGTGGGTGAAAGAACGTTACGAGAGCGATGAAGAAGATG  120

Query  138  GAGAGGTGAACAAACTCATCCTAAAGGAAGATGAAGAAACTAAAGATATGGTGACATCAC  197
            |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| 
Sbjct  121  GAGAGGTGAACAAACTTATCCTAAAGGAAGATGAAGAAACTAAAGATGTGGTGACATCAT  180

Query  198  CGAGTGGTGAGAGGATGATGTTAACAAGTAAGGTGAGGTATCTCACCTATGGAGCTCTCA  257
            ||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct  181  CGAATGGTGAGGGGATGATGTTGACAAGTAAGGTGAGGTATCTCAACTATGGAGCTCTCA  240

Query  258  AACATGACACGGCGGCTTCGGCAGCTTCCGGTGGTGGAGGAAGAGCCTTGCCTCATCCGT  317
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
Sbjct  241  AACATGACACGGCGGCTCCGGCAGCTTCCGGTGGTGGAGGAAGAGCCTTGCCTCTTCCAT  300

Query  318  CGAACAAGTACAACCGTGGCCACCCCAAGTACTACAGATGCAGAGGTTGAAGTGAAAACT  377
            |||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CGAACAGGTACCACCGTGGTCACCCCAAGTACTACAGATGCAGAGGTTGAAGTGAAAACT  360

Query  378  CTCTGCTGATAAAATAATTTCGAATTAATTAATTGTAATAACCCTATATTGTATAA-TAA  436
            ||| |||||||||||||||||||||||||||||   |||||||||||||||||||| |||
Sbjct  361  CTCCGCTGATAAAATAATTTCGAATTAATTAAT---AATAACCCTATATTGTATAAATAA  417

Query  437  GTTTGTTGAGTATGTATACTCCATGCAACGTGTGTTATCTATGTGCTTGCAATTCCTATT  496
            ||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||  ||
Sbjct  418  GTTTGGTGAGTATGTATACTCCATGCAACGTGTGTTATCTATGTGCTTGTACTTCCCCTT  477

Query  497  CTTATAT  503
             ||||||
Sbjct  478  TTTATAT  484



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001483322


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5