BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14030.1
Length=1753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947009 jgi|Araly1|947009|scaffold_703238.1 2298 0.0
Ahg330113 jgi|Araly1|330113|fgenesh1_pm.C_scaffold_7002340 763 0.0
> Ahg947009 jgi|Araly1|947009|scaffold_703238.1
Length=1513
Score = 2298 bits (1244), Expect = 0.0
Identities = 1431/1521 (94%), Gaps = 14/1521 (1%)
Strand=Plus/Plus
Query 49 TTTGACTTCACATagagagagatagagagaTGGCGACGGAAACGGAAGTTGTAGCTCCGG 108
||||||||||| | | |||| |||||||||||||||||||||||||| || | | |
Sbjct 1 TTTGACTTCAC--A-A-AGAG--AGAGAGATGGCGACGGAAACGGAAGTGGT-GGT-TGC 52
Query 109 TAACGGTAAGCAACGGCGGAAGCAAAGGATGTTGCAAGTACGGTGGTCCTGGTTACGCGA 168
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 53 T-CCGGTAAGCAACGGTGGAAGCAAAGGATGTTGCAAGTACGGTGGTCCTGGTTACGCAA 111
Query 169 CTCCTCTCGCCGCTATGTCTGGTCCATCG-GAGAAACTTATCTACGTAACCGCCGTCTAC 227
| ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||
Sbjct 112 CGCCTCTCGCCGCTATGTCTGGTCC-GAGTGAGAAACTTATCTACGTCACCGCCGTCTAC 170
Query 228 ACCGGAACTGGAATAGATAAACCGGATTATTTGGCGACGGTGGATGTAGATCCAAGCTCG 287
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 171 ACCGGAACTGGAATAGATAAACCGGACTATTTGGCGACGGTGGATGTGGATCCGAGCTCG 230
Query 288 CCTTCGTATTCAAGTGTTATTCATAGATTACCAATGCCTTTTGTTGGTGATGAGCTTCAT 347
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 231 CCTTCGTATTCAAGGGTTATTCATAGATTGCCAATGCCTTTTGTTGGTGATGAGCTTCAT 290
Query 348 CATTCTGGTTGGAACTCTTGTAGTTCTTGCCATGGTGATGCTTCTGTTGATAGACGTTAT 407
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 291 CATTCTGGTTGGAACTCTTGTAGTTCTTGCCATGGTGATGCTTCTGCTGATAGACGTTAT 350
Query 408 CTCGTGTTACCGTCTCTTATATCTGGTCGCATTTATGCGATTGATACTAAGGAAAACCCG 467
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 351 CTCGTGTTACCGTCTCTTATATCTGGTCGTATTTATGCGATTGATACTAAGGAAAACCCG 410
Query 468 AGGGCTCCGTCTTTGTATAAGTATGTTGATCCTAAAGAGATTGCTGATAAGACTGGATTG 527
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 411 AGGGCTCCGTCTTTGTATAAGTATGTTGATCCTAAAGAGATTGCTGATAAGACCGGATTG 470
Query 528 GCGTTTCCTCACACGGCTCATTGCCTCGCCACGGGCGAGATCTTGGTGTCCTGTCTTGGA 587
|||||||| || |||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 471 GCGTTTCCACATACGGCTCATTGCCTTGCTACGGGTGAGATCTTGGTGTCGTGTCTTGGG 530
Query 588 GATGAAGAGGGGAATGCTAAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTTTAACATC 647
|| ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 531 GACGAAGAGGGGAACGCCAAGGGGAATGGGTTTCTTCTTCTTGATTCTGATTTTAACATC 590
Query 648 AAGAATAGGTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCAA 707
|||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 591 AAGAATAGGTGGGAGAAACCAGGACACAGTCCCTTGTTTGGGTATGATTTTTGGTACCAA 650
Query 708 CCTCGGCACAAGACCATGATCAGCACATCTTGGGGAGCACCTAAAGCCTTCTCTAAAGGT 767
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 651 CCTCGGCACAAGACCATGATCAGCACATCTTGGGGAGCACCTAAAGCTTTCTCCAAAGGT 710
Query 768 TTCAATCTTCAGCACGTTGCTGATGGCTTGTATGGAAGTCATCTACATGTTTATAGTTGG 827
|||||||| || || ||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 711 TTCAATCTCCAACATGTTGCGGATGGCTTATACGGAAGTCATCTACATGTTTATAGTTGG 770
Query 828 CCAGGAGGTGAAATAAAACAATTAATTGACCTTGGACCGACTGGTCTCTTACCTTTGGAG 887
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CCAGGAGGTGAAATGAAACAATTAATTGACCTTGGACCGACTGGTCTCTTACCTTTGGAG 830
Query 888 ATTAGATTCTTGCATGATCCATCTAAAGATACAGGGTTTGTTGGGAGTGCCTTGTCGAGT 947
|||||||||||||| || || ||||||||||||||||||||||||||||||||||| |||
Sbjct 831 ATTAGATTCTTGCACGAGCCGTCTAAAGATACAGGGTTTGTTGGGAGTGCCTTGTCAAGT 890
Query 948 AATATGATAAGATTTTTCAAGAACAGTGATGAAACATGGAGCCATGAGGTTGTTATATCG 1007
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 891 AATATGATAAGATTTTTCAAGAACAGTGATGAAACATGGAGCCATGAGGTGGTTATATCA 950
Query 1008 GTTAAACCGTTGAAAGTCGAAAACTGGATACTTCCAGAAATGCCGGGGCTAATCACCGAC 1067
||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 951 GTTAAACCGCTGAAAGTAGAAAACTGGATTCTTCCAGAAATGCCGGGGCTTATCACCGAC 1010
Query 1068 TTCTTGATCTCCCTCGATGACCGATTTATTTACTTTGTGAACTGGCTCCATGGAGACATT 1127
|||||||||||||||||||||||||| || |||||||| |||||||||||||||||| ||
Sbjct 1011 TTCTTGATCTCCCTCGATGACCGATTCATCTACTTTGTAAACTGGCTCCATGGAGACGTT 1070
Query 1128 CGTCAGTACAACATAGAGGACCCTAAAAACCCTGTATTAACAGGGCAAATTTGGGTTGGA 1187
|||||||||||||| |||||||||||||||||| | |||||||| ||||||||||| |||
Sbjct 1071 CGTCAGTACAACATTGAGGACCCTAAAAACCCTATCTTAACAGGACAAATTTGGGTCGGA 1130
Query 1188 GGATTACTACAAAAGGGCAGTCCTGTTAAGGCGGTTGGAGAAGACGGAAACACTTTCCAA 1247
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1131 GGATTACTACAAAAGGGCAGTCCTGTTAAGGCGGTTGGAGAAGACGGCAACACTTTCCAA 1190
Query 1248 TTCGAGGTTCCTCAGATCAAGGGGAAATCTTTACGAGGTGGACCTCAAATGATTCAGCTG 1307
||||| ||||||||||||||||| || ||| ||||||| |||||||||||||| ||||||
Sbjct 1191 TTCGATGTTCCTCAGATCAAGGGTAACTCTCTACGAGGAGGACCTCAAATGATCCAGCTG 1250
Query 1308 AGCCTCGATGGGAAACGATTGTATGCAACAAACTCGCTGTTTAGCGCATGGGATCGTCAG 1367
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 AGCCTTGATGGGAAACGATTGTATGCAACAAACTCGCTGTTTAGCGCATGGGATCGTCAG 1310
Query 1368 TTTTATCCTGAAATCATGGAGAAAGGCTCACACATAATTCAGATTGATGTTGATACAGAA 1427
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 TTTTACCCGGAAATCATGGAGAAAGGCTCACACATAATTCAGATTGATGTTGATACAGAC 1370
Query 1428 AAAGGTGGTCTCACCATAAACCCTGATTTCTTTGTGGACTTTGGTGATGAACCAGACGGT 1487
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1371 AAAGGTGGTCTCACCATAAACCCTGACTTCTTTGTGGACTTTGGTGATGAACCGGACGGT 1430
Query 1488 CCTTCACTAGCCCACGAGATGAGATATCCAGGTGGAGACTGCACTTCCGATATCTGGATT 1547
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1431 CCTGCACTAGCCCACGAGATGAGATATCCCGGTGGAGACTGCACTTCCGATATCTGGATT 1490
Query 1548 TGAatttggc-t-t-tgttta 1565
|||||||||| | | ||||||
Sbjct 1491 TGAATTTGGCCTGTCTGTTTA 1511
> Ahg330113 jgi|Araly1|330113|fgenesh1_pm.C_scaffold_7002340
Length=3174
Score = 763 bits (413), Expect = 0.0
Identities = 741/896 (83%), Gaps = 36/896 (4%)
Strand=Plus/Plus
Query 53 ACTT-CACATa--gagagagatagagagaTGGCGACGGAAACGGAAGTTGTAGCTC-CGG 108
|||| |||||| ||||| || ||||| |||||||||||||| | | ||| || | |||
Sbjct 1719 ACTTCCACATACTGAGAGTGAGAGAGAAATGGCGACGGAAACCGTA-TTG--GC-CACGG 1774
Query 109 TAACGGTAAGCAACGGCGGAAGCAAAGGATGTTGCAAGTACGGTGGTCCTGGTTACGCGA 168
|||| ||||||||| ||||||||||||||||||||| | ||||| ||||||||||
Sbjct 1775 ---CGGTGAGCAACGGCAGAAGCAAAGGATGTTGCAAGT-C--CGGTCCAGGTTACGCGA 1828
Query 169 CTCCTCTCGCCGCTATGTCTGGTCCATC-GGAGAAA-CTTATCTA-CGTAACCGCCGTCT 225
| ||||| ||||| ||| |||||||| | ||| ||| || ||||| | | |||||| |||
Sbjct 1829 CGCCTCTAGCCGCCATGGCTGGTCCA-CGGGA-AAAGCTCATCTATC-TCACCGCCCTCT 1885
Query 226 ACACCGGAACTGGAATAGATAAACCGGATTATTTGGCGACGGTGGATGTAGATCC-AAGC 284
|| ||||||| || ||| |||||||| || ||||||||||||||||| ||||| || |
Sbjct 1886 ACTCCGGAACGGGGCGAGACAAACCGGACTACTTGGCGACGGTGGATGTGGATCCTAA-C 1944
Query 285 TCGCCTTCGTATTCAAGTGTTATTCATAGATT-ACCAATGCCTTTTGTTGGTGATGAGCT 343
|| || | ||||||||||| ||||| || || | |||||||| | | |||||||||||
Sbjct 1945 TCACCCACATATTCAAGTGTCATTCACAGGTTGA-AAATGCCTTATATAGGTGATGAGCT 2003
Query 344 TCATCATTCTGGTTGGAACTCTTGTAGTTCTTGCCATGGTGATGCTTCTGTTGATAGACG 403
||| || |||||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct 2004 TCACCACACTGGTTGGAACTCTTGCAGCTCTTGCCATGGTGATGCTTCTGCTGATAGACG 2063
Query 404 TTATCTCGTGTTACC-GTCTCTTATATCTGGTCGCATTTATGCGATTGATACTAAGGA-A 461
||| ||||| ||||| | || | || ||||||||||||||||| || || || || ||
Sbjct 2064 TTACCTCGTCTTACCAGGCT-TAATCTCTGGTCGCATTTATGCAATCGACAC-AAAGACC 2121
Query 462 AACCCGAGGGCTCCGTCTTTGTATAA-GTATGTTGATCCTAAAGAGATTGCTGATAAGAC 520
|||| | |||||| |||||||| || || ||| || ||| ||||||||||| | || ||
Sbjct 2122 GACCCAAAGGCTCCATCTTTGTACAAGGT-TGTAGAGCCTGAAGAGATTGCTAAAAAAAC 2180
Query 521 TGGATTGGCGTTTCCTCACACGGCTCATTGCCTCGCCACGGGCGAGATCTTGGTGTCCTG 580
||||| || ||||| || || |||||||||||||| |||| || || |||||||| ||
Sbjct 2181 AGGATTAGCATTTCCACATACATCTCATTGCCTCGCCTCGGGTGATATGTTGGTGTCTTG 2240
Query 581 TCTTGGAGATGAAGAGGGGAATGCTAAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTT 640
||||| || |||| || || || || ||||| |||||||| |||||||||||||| ||
Sbjct 2241 CCTTGGGGACAAAGAAGGAAACGCCAAAGGGAACGGGTTTCTCCTTCTTGACTCTGACTT 2300
Query 641 TAACATCAAGAA-TAGGTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTT 699
|| |||| || |||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct 2301 CAATGTCAA-AAGCAGGTGGGACAAACCAGGACATGGTCCTTTGTTTGGGTATGATTTTT 2359
Query 700 GGTACCAACCTCGGCACAAGACCATGATCAGCACATCTTGGGGAGCACCTAAAGCCTTCT 759
|||||||||||||| |||||| ||||||||||| |||||||| || |||||||||||||
Sbjct 2360 GGTACCAACCTCGGTTCAAGACAATGATCAGCACTTCTTGGGGTGCGCCTAAAGCCTTCT 2419
Query 760 CTAAAGGTTTCAATCTTCAGCACGTTGCTGATGGCTTGTATGGAAGTCATCTACATGTTT 819
| |||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |||
Sbjct 2420 CCAAAGGTTTCAATCTCCAGCACGTTGCTGATGGCTTATATGGAAGTCATTTACATATTT 2479
Query 820 ATAGTTGGCCAGGAGGTGAAATAAAACA-ATTAATTGACCTTGGACCGACTGGTCTCTTA 878
||| ||||| | ||||||||| || || |||| ||||||| ||| || |||||||||
Sbjct 2480 ATAAATGGCCTGAAGGTGAAATGAAGCAGATTA-TTGACCTCGGAAATACCGGTCTCTTA 2538
Query 879 CCT-TTGGAGATTAGATTCTTGCATGATCCATCTAAAGATACAGGGTTTGTTGGGA 933
||| ||| |||||||||||||||||||||| |||||||||||||||| ||| ||||
Sbjct 2539 CCTCTTG-AGATTAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTCGGGA 2593
Score = 721 bits (390), Expect = 0.0
Identities = 522/585 (89%), Gaps = 12/585 (2%)
Strand=Plus/Plus
Query 974 TGATGAAACATGGAGCCATGA-G---GTTGTTATATCGGTTAAACCGT-TGAAAGTCGAA 1028
|||||| |||||||||||||| | || ||||||||||||||||| | ||||||| |||
Sbjct 2594 TGATGACACATGGAGCCATGAGGCAAGTGGTTATATCGGTTAAACC-TCTGAAAGTTGAA 2652
Query 1029 AACTGGATACTTCCAGAAATGCCGGGGCTAATCACCGACTTCTTGATCTCCCTCGATGAC 1088
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2653 AACTGGATTCTTCCAGAAATGCCGGGGCTTATCACCGACTTCTTGATCTCCCTCGATGAC 2712
Query 1089 CGATTTATT-TACTTTGTGAACTGGCTCCATGGAGACATTCGTCAGTACAACATAGAGGA 1147
|| ||| || ||||||||||||||||| ||||||||||| |||||||||||||| || ||
Sbjct 2713 CGGTTT-TTCTACTTTGTGAACTGGCTTCATGGAGACATCCGTCAGTACAACATCGAAGA 2771
Query 1148 CCCTAAAAACCCTGTATTAACAGGG-CAAATTTGGGTTGGAGGATTACTACAAAAGGGCA 1206
|||||||||||| || ||||| ||| ||||||||||| |||||||||||||||||||| |
Sbjct 2772 CCCTAAAAACCCGGTCTTAAC-GGGACAAATTTGGGTCGGAGGATTACTACAAAAGGGTA 2830
Query 1207 GTCCTGT-TAAGGCGGTTGGAGAAGACGGAAACACTTTCCAATTCGAGGTTCCTCAGATC 1265
||||| | ||||| ||||||||||| || ||||||| |||||| || ||||| ||||||
Sbjct 2831 GTCCT-TACAAGGCTGTTGGAGAAGATGGTAACACTTACCAATTTGACGTTCCGCAGATC 2889
Query 1266 AAGGGGAAATCTTTACGAGGTGGACCTCAAATGATTCAGCTGAGCCTCGATGGGAAACGA 1325
|||||||| ||| |||||| |||||| | ||||| || || |||||||| |||||| ||
Sbjct 2890 AAGGGGAAGTCTCTACGAGCAGGACCTTAGATGATCCAACTAAGCCTCGACGGGAAAAGA 2949
Query 1326 TTGTATGCAACAAACTCGCTGTTTAGCGCATGGGATCGTCAGTTTTATCCTGAAATCATG 1385
||||| || ||||||||||| |||||||| ||||| ||||||||||| || ||| |||||
Sbjct 2950 TTGTACGCGACAAACTCGCTATTTAGCGCGTGGGACCGTCAGTTTTACCCGGAACTCATG 3009
Query 1386 GAGAAAGGCTCACACATAATTCAGATTGATGTTGATACAGAAAAAGGTGGTCTCACCATA 1445
|| |||||||||||||| ||||| || |||||||| ||||| ||||||||||||||||||
Sbjct 3010 GATAAAGGCTCACACATCATTCAAATCGATGTTGACACAGACAAAGGTGGTCTCACCATA 3069
Query 1446 AACCCTGATTTCTTTGTGGACTTTGGTGATGAACCAGACGGTCCTTCACTAGCCCACGAG 1505
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3070 AACCCTGACTTCTTTGTGGACTTTGGTGATGAACCAGACGGTCCTGCACTAGCCCACGAG 3129
Query 1506 ATGAGATATCCAGGTGGAGACTGCACTTCCGATATCTGGATTTGA 1550
||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 3130 ATGAGATATCCCGGTGGAGACTGCACTTCCGATATCTGGATCTGA 3174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65781853115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5