BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14050.1
Length=1877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330113 jgi|Araly1|330113|fgenesh1_pm.C_scaffold_7002340 2630 0.0
> Ahg330113 jgi|Araly1|330113|fgenesh1_pm.C_scaffold_7002340
Length=3174
Score = 2630 bits (1424), Expect = 0.0
Identities = 1577/1652 (95%), Gaps = 5/1652 (0%)
Strand=Plus/Plus
Query 228 ATGCCTCATAGAGATCACATCGCCTGGGCCTCGGTTCTCACAGCTCTTAATCAAGCCAAT 287
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGCCTCACAGAGACCACATCGCCTGGGCCTCGGTTCTCACAGCTCTTAATCAAGCGAAT 60
Query 288 CTCTCTGGTAAGACACTATCAGTATTTTCTTCAGTGGGTTCGAGCTCTGGGTTGCGTCCT 347
|||||||||||||| || | || ||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTCTGGTAAGACTCTCTGGGTCTTTTCTTCAGTGGGTTCGAGCTCTGGGTTGCGTCCT 120
Query 348 GATGATTTTGTGTTCTCGGCTCTTGTTAAGGCTTGTGCTAACTTAGGATCTATTGATCAC 407
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 121 GATGATTTTGTGTTCTCGGCTCTTGTTAAGGCTTGTGCTAACTTAGGATCTATTAAGCTC 180
Query 408 GGGAGGCAAGTTCATTGCCATTTTATAGTCTCTGAGTA-TGCTAATGATGAAGTTGTTAA 466
|||| ||||||||||||||||||||||||||||||||| | | |||||||| ||||||||
Sbjct 181 GGGAAGCAAGTTCATTGCCATTTTATAGTCTCTGAGTATTTC-AATGATGATGTTGTTAA 239
Query 467 GTCTTCACTGGTTGATATGTATGCTAAATGTGGATTGCTTAATAGTGCTAAAGCAGTTTT 526
||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||
Sbjct 240 GTCTTCACTGGTTGATATGTATGCTAAATGTGGGTTGCTCGATAGCGCTAAAGTAGTTTT 299
Query 527 CGATTCTATAAGAGTGAAAAACACCATTTCATGGACTGCAATGGTATCTGGATATGCTAA 586
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 TGATTCTATAAGAGGGAAAAACACCATTTCATGGACTGCAATGGTATCTGGATATGCGAA 359
Query 587 AAGCGGAAGAAAGGAAGAAGCTTTGGAGCTTTTTAGGATATTACCAGTCAAGAATTTGTA 646
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 AAGCGGAAGAAAGGAAGAAGCTTTGGAGCTTTTTAGGAGATTACCAGTCAAGAATTTGTA 419
Query 647 TTCTTGGACTGCGTTGATCTCTGGTTTTGTACAGAGTGGGAAAGGGCTTGAAGCTTTTTC 706
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 TTCTTGGACTGCATTGATCTCTGGTTTTGTACAGAGTGGGAAAGGTCTTGAAGCTTTTTC 479
Query 707 TGTTTTCACTGAAATGAGGAGAGAAAGAGTTGACATTTTGGATCCTTTAGTTCTTTCGAG 766
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TGTGTTCACTGAAATGAGGAGAGAAAGAGTTGACATTTTGGATCCCTTAGTTCTTTCGAG 539
Query 767 CATCGTTGGCGCTTGTGCTAATTTGGCAGCTTCTATAGCGGGGAGGCAGGTTCATGGGTT 826
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 540 TATTGTTGGTGCTTGTGCTAATTTGGCAGCTTCAATAGCGGGGAGGCAGGTTCACGGTTT 599
Query 827 GGTTATAGCTCTAGGATTTGATTCTTGTGTGTTTATTAGTAACGCCCTTATCGATATGTA 886
|||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 600 GGTTATAGCTTTAGGATTTGATTCTTGTGTGTTTATTAGTAATGCGCTTATCGATATGTA 659
Query 887 CGCTAAATGCAGCGATGTTATAGCTGCAAAGGATATTTTCAGTAGGATGCGTCACAGAGA 946
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 660 TGCTAAATGCAGCGATGTTATAGCTGCAAAGGATATTTTCAGTAGAATGCGCCACAGAGA 719
Query 947 TGTAGTTTCATGGACATCGCTTATAGTTGGAATGGCTCAGCACGGGCAGGCTGAGAAGGC 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGTAGTTTCATGGACATCGCTTATAGTTGGAATGGCTCAGCACGGGCAGGCTGAGAAGGC 779
Query 1007 ATTAGCGTTGTATGATGACATGGTTTCTCACGGTGTAAAGCCCAATGAGGTCACATTTGT 1066
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATTGGCTTTGTATGATGACATGGTTTCTCACGGTGTAAAGCCCAATGAGGTCACATTTGT 839
Query 1067 TGGGTTGATATATGCGTGTAGCCATGTCGGTTTTGTTGAGAAAGGCCGTGAGCTTTTCCA 1126
|||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 840 TGGGTTGATATACGCGTGTAGCCATGTCGGTTTTGTAGCTAAAGGCCGTGAGCTTTTCCA 899
Query 1127 ATCAATGACTAAGGACTATGGAATTCGCCCATCTTTGCAGCATTATACATGCTTATTGGA 1186
||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 900 ATCAATGACCAAGGACTACGGAATTCGCCCATCCTTGCAGCATTATACATGCTTATTGGA 959
Query 1187 TCTTCTCGGTCGCTCTGGACTCCTTGATGAGGCTGAGAACTTAATTCATACAATGCCGTT 1246
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TCTTCTTGGTCGGTCTGGACTCCTTGATGAGGCTGAGAACTTAATTCATACAATGCCGTT 1019
Query 1247 TCCTCCAGATGAACCAACATGGGCTGCTTTACTTAGCGCTTGCAAGCGCCAGGGACGAGG 1306
|||||||||||||||||||||||||||| ||||||| || || ||||||||||||| |||
Sbjct 1020 TCCTCCAGATGAACCAACATGGGCTGCTCTACTTAGTGCCTGTAAGCGCCAGGGACAAGG 1079
Query 1307 TCAGATGGGTATAAGAATCGCTGATCATCTCGTAAGCAGCTTTAAACTGAAAGATCCATC 1366
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1080 TCAGATGGGTGTAAGAATCGCTGATCATCTCGTAAGCAGCTTTAAACCGAAAGATCCATC 1139
Query 1367 GACTTATATACTTTTATCAAACATCTATGCAAGTGCTTCTTTGTGGGGAAAAGTATCAGA 1426
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 AACTTATATACTTCTATCAAACATCTATGCAAGTGCTTCTTTGTGGGGAAAAGTATCGGA 1199
Query 1427 AGCAAGAAGGAAACTAGGAGAA-ATGGAAGTTAGAAAGGATCCAGGGCACAGTAGCGTCG 1485
| ||||||||||||||||| || |||||||||||||| ||||||||| |||||||||| |
Sbjct 1200 AACAAGAAGGAAACTAGGA-AACATGGAAGTTAGAAAAGATCCAGGGTACAGTAGCGTTG 1258
Query 1486 AGGTACGGAAAGAAACCGAAGTGTTTTACGCAGGAGAAACATCTCATCCTCTAAAAGAAG 1545
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1259 AGGTACGGAAAGAAACCGAAGTGTTTTACGCAGGAGAAACATCTCATGCTCTAAAAGAAG 1318
Query 1546 ACATTTTTCGATTGCTTAAGAAGCTAGAGGAAGAAATGAGGATAAGAAATGGTTATGTTC 1605
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ACATCTTTCGATTGCTTAAGAAGCTAGAGGAAGAAATGAGGATAAGAAATGGTTATGTTC 1378
Query 1606 CTGATACTAGTTGGATCCTACACGACATGGATGAGCAAGAGAAAGAAAAGCTTTTGTTTT 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CTGATACTAGTTGGATCCTACACGACATGGATGAGCAAGAGAAAGAAAAGCTTTTGTTTT 1438
Query 1666 GGCATAGCGAACGATCCGCTGTTGCATACGGATTGCTTAAAGCTGTTCCGGGAACTCCTA 1725
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1439 GGCATAGCGAACGATCCGCTGTTGCATACGGATTGCTTAAAGCTGTTCCGGGAACTCCAA 1498
Query 1726 TACGGATTGTGAAAAATCTAAGGGTTTGTGGAGATTGTCATGTTGTTCTGAAACATATAA 1785
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TACGAATTGTGAAAAATCTAAGGGTTTGTGGAGATTGTCATGTTGTTCTGAAACATATAA 1558
Query 1786 GTGAGATTACAGAAAGAGAGATTATAGTTAGAGATGCGACTAGATATCATCATTTTAAGG 1845
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1559 GTGAAATTACAGAAAGAGAGATTATAGTTCGAGATGCGACTAGATATCATCATTTTAAGG 1618
Query 1846 GAGGAAAATGTTCCTGCAATGACTTCTGGTAA 1877
|||||||||||||||||||||||||||| |||
Sbjct 1619 GAGGAAAATGTTCCTGCAATGACTTCTG-TAA 1649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70505043495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5