BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14060.1 Length=673 Score E Sequences producing significant alignments: (Bits) Value Ahg493506 jgi|Araly1|493506|fgenesh2_kg.7__2939__AT4G14060.1 933 0.0 Ahg935860 jgi|Araly1|935860|scaffold_500051.1 651 0.0 Ahg322644 jgi|Araly1|322644|fgenesh1_pm.C_scaffold_5000188 608 1e-173 Ahg312489 jgi|Araly1|312489|fgenesh1_pm.C_scaffold_1001269 303 8e-82 > Ahg493506 jgi|Araly1|493506|fgenesh2_kg.7__2939__AT4G14060.1 Length=647 Score = 933 bits (505), Expect = 0.0 Identities = 604/649 (93%), Gaps = 18/649 (3%) Strand=Plus/Plus Query 10 AGAAGAAACAAAAAACACACTTCACTCGCTACCGAAGGAAGAGAGAT--AGAGAGAGGGA 67 |||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||| Sbjct 1 AGAAGAAACAAAAAACACACTTCACTAGCTACCAAAGGAAGAGAGATAGAGAGAGAGGGA 60 Query 68 GATGGCTACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCAGCGGAGAAACA 127 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GATGGCGACTTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCAGCGGAGAAACA 120 Query 128 CTACAAGCGGTGGAGGAATGAGAACCACCTTTTCCCCGACGCCATCGGCCACCACATCCA 187 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 121 CTACAAGCGGTGGAGGAATGAGAACCACCTCTTCCCCGACGCCATCGGTCACCACATCCA 180 Query 188 AGGTGTCACCGTCCACGACGGCGAATGGGACTCCCATGGAGCCCTCAAGATTTGGAACTA 247 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 181 AGGTGTCGCCGTCCACGACGGCGAATGGGACTCCCATGGAGCCATCAAGATTTGGAACTA 240 Query 248 CACATTAGATGGGAAACCGGAGATGTTCAAGGAGAGGAGAGAGATAGACGATGAAAACAT 307 |||||||||||||||||||||| |||||||||||||||| |||||||| ||||| || || Sbjct 241 CACATTAGATGGGAAACCGGAGGTGTTCAAGGAGAGGAGGGAGATAGATGATGAGAATAT 300 Query 308 GGCGGTAACGTTC-GTTGGACTAGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGATA 366 |||||| |||||| | ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 301 GGCGGTGACGTTCAGA-GGACTAGAAGGTCACGTAATGGAGCAGCTTAAAGTGTATGATA 359 Query 367 CCATTTTACAGTTCATTCAAAAGTCCCC-GGATGATATCGTTTGCAAGATCACTATGACC 425 |||| |||||||||||||||||||| || || ||||||||| |||||||||||||||||| Sbjct 360 CCATCTTACAGTTCATTCAAAAGTCGCCTGG-TGATATCGTCTGCAAGATCACTATGACC 418 Query 426 TGGGAGAAGCGAGCCGATGACTCGCCTGAACCCAGCAACTACATGAAGTTGGTCAAGAGT 485 |||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 419 TGGGAGAAGCGAACGGATGACTCGCCTGAGCCCAGCAACTACATGAAGTTGGTCAAGAGC 478 Query 486 CTCGCTGCTGACATGGACGCCCACGTTCTCAAAGCCTAAT--CCC---TCTCACCTAAAC 540 ||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| Sbjct 479 CTCGCTGCTGACATGGACGCCCACGTTCTCAAAGCCTAAAAACCCCCCTCTCACGTAAAC 538 Query 541 CCATCATCATCGTGTGTGTA-----A-CTTTGTATGATGTTTTCAATATAATAAATGGGG 594 ||||||||||||||||||| | |||| |||||||||||||||||||||||||||| Sbjct 539 CCATCATCATCGTGTGTGTGTGTGTATCTTT-TATGATGTTTTCAATATAATAAATGGGG 597 Query 595 GTTTGCATGTATGGTTTCATCTACTGTAATATGCTTTGATGTTGTTTAT 643 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TTTTGCATGTATGGTTTCATCTACTGTAATATGCTTTGATGTTGTTTAT 646 > Ahg935860 jgi|Araly1|935860|scaffold_500051.1 Length=499 Score = 651 bits (352), Expect = 0.0 Identities = 455/504 (90%), Gaps = 10/504 (2%) Strand=Plus/Plus Query 46 GGAAGAGAGATAGAGAGAGGGAGATGGCTACGTCAGGAACATATGTGACGGAGGTTCCTT 105 |||||||| | | |||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 1 GGAAGAGACA-AAAGAGAGAGAGATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTT 59 Query 106 TGAAAGGATCAGCGGAGAAACACTACAAGCGGTGGAGGAATGAGAACCACCTTTTCCCCG 165 |||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 60 TGAAAGGATCGGCGGAGAAACACTACAAGCGGTGGAGGAGTGAGAACCACCTCTTCCCCG 119 Query 166 ACGCCATCGGCCACCACATCCAAGGTGTCACCGTCCACGACGGCGAATGGGACTCCCATG 225 | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 120 ATGCCGTCGGCCACCACATCCAAGGTGTCACCATCCACGACGGCGAATGGGACTCCCATG 179 Query 226 GAGCCCTCAAGATTTGGAACTACACATTAGATGGGAAACCGGAGATGTTCAAGGAGAGGA 285 ||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 180 GAGCCATCAAGATTTGGAACTACACATGCGATGGGAAACCGGAGGTGTTCAAGGAGAGGA 239 Query 286 GAGAGATAGACGATGAAAACATGGCGGTAACGTTC-GTTGGACTAGAAGGTCACGTGATG 344 ||||||||||||| || || ||||||||||| ||| | ||||||||||||||||||||| Sbjct 240 GAGAGATAGACGACGAGAATATGGCGGTAACATTCAGA-GGACTAGAAGGTCACGTGATG 298 Query 345 GAGCAGCTTAAAGTGTATGATACCAT-TTTACAGTTCATTCAAAAGTCCCCGGATGATAT 403 |||||||||||||||||||| ||| ||| |||||||||||||||||||| |||||||| Sbjct 299 GAGCAGCTTAAAGTGTATGACGTCATCTTT-CAGTTCATTCAAAAGTCCCCTGATGATAT 357 Query 404 CGTTTGCAAGATCACTATGACCTGGGAGAAGCGAGCCGATGAC-TCGCCTGAACCCAGCA 462 | | || ||||||||||||| ||||||||||| | ||||||| | |||||| || |||| Sbjct 358 CATCTGTAAGATCACTATGATCTGGGAGAAGCAAAACGATGACAT-GCCTGAGCCTAGCA 416 Query 463 ACTACATGAAGTTGGTCAAGAGTCTCGCTGCTGACATGGACGCCCACGTTCTCAAAGCCT 522 ||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||||| Sbjct 417 ACTACATGAAGTTCGTCAAGAGCCTCGCTGCTGACATGGATGATCACGTTCTCAAAGCCT 476 Query 523 AA-TCCCTCT-CACCTAAACCCAT 544 || |||| || ||| | ||||||| Sbjct 477 AAATCCC-CTTCACATCAACCCAT 499 > Ahg322644 jgi|Araly1|322644|fgenesh1_pm.C_scaffold_5000188 Length=456 Score = 608 bits (329), Expect = 1e-173 Identities = 416/458 (91%), Gaps = 6/458 (1%) Strand=Plus/Plus Query 69 ATGGCTACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCAGCGGAGAAACAC 128 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCCGCGGAGAAACAC 60 Query 129 TACAAGCGGTGGAGGAATGAGAACCACCTTTTCCCCGACGCCATCGGCCACCACATCCAA 188 |||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 61 TACAAGCGTTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCACATCCAG 120 Query 189 GGTGTCACCGTCCACGACGGCGAATGGGACTCCCATGGAGCCCTCAAGATTTGGAACTAC 248 ||||| ||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 121 GGTGTTACCATCCACGACGGCGAATGGGACTCTCATGGAGCCATCAAGATTTGGAACTAC 180 Query 249 ACATTAGATGGGAAACCGGAGATGTTCAAGGAGAGGAGAGAGATAGACGATGAAAACATG 308 |||| ||||||||| ||||| ||||||||||||||||||||||||||||||| || ||| Sbjct 181 ACATGCGATGGGAAAGCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAATATG 240 Query 309 GCGGTAACGTTC-GTTGGACTAGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGATAC 367 |||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| Sbjct 241 GCGGTAACGTTCAGA-GGACTGGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGACGT 299 Query 368 CAT-TTTACAGTTCATTCAAAAGTCCCCGGATGATATCGTTTGCAAGATCACTATGACCT 426 ||| ||| |||||||||||||||||||| ||||||||| | || ||||||||||||| | Sbjct 300 CATCTTT-CAGTTCATTCAAAAGTCCCCTGATGATATCATCTGTAAGATCACTATGATTT 358 Query 427 GGGAGAAGCGAGCCGATGAC-TCGCCTGAACCCAGCAACTACATGAAGTTGGTCAAGAGT 485 ||||||||| | ||||||| | |||||| |||||||||||||||||||| |||||||| Sbjct 359 GGGAGAAGCAAAACGATGACAT-GCCTGAGCCCAGCAACTACATGAAGTTCGTCAAGAGC 417 Query 486 CTCGCTGCTGACATGGACGCCCACGTTCTCAAAGCCTA 523 ||||| ||||||||||||| ||||||||||||||||| Sbjct 418 CTCGCCGCTGACATGGACGATCACGTTCTCAAAGCCTA 455 > Ahg312489 jgi|Araly1|312489|fgenesh1_pm.C_scaffold_1001269 Length=468 Score = 303 bits (164), Expect = 8e-82 Identities = 368/463 (79%), Gaps = 28/463 (6%) Strand=Plus/Plus Query 69 ATGGCTACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCAGCGGAGAAACAC 128 ||||| | |||||||||||||||| |||| || || ||||||| || |||||||||||| Sbjct 1 ATGGCGATGTCAGGAACATATGTGGCGGAAGTACCGCTGAAAGGGTCGGCGGAGAAACAC 60 Query 129 TACAAGCGGTGGAGGAATGAGAACCACCTTTTCCCCGACGCCATCGGCCACCACATCCAA 188 || | | | ||||||| | ||| |||| ||||| ||||||||||||||||| ||||| Sbjct 61 TATAGGAGATGGAGGAGCCAAAACAACCTCTTCCCGGACGCCATCGGCCACCATGTCCAA 120 Query 189 GGTGTCACCGTCCACGACGGCGAATGGGACTCCCATGGAGCCCTCAAGATT-TGGAACTA 247 ||||||||||||||||||||||| ||| | ||||| || || |||| || |||||||| Sbjct 121 GGTGTCACCGTCCACGACGGCGACTGGAAATCCCACGGTTCCATCAA-ATCCTGGAACTA 179 Query 248 CACATTAGATGGGAAACCGGAGATGT--TCAAGGAGAGGAGAGAGATAGACGATGAAAAC 305 |||| | |||||||| ||||| | || ||||||||| |||||| |||||||| || || Sbjct 180 CACACTCGATGGGAAGCCGGA-A-GTCATCAAGGAGAAGAGAGATATAGACGACGAGAAG 237 Query 306 ATGGCGGTAACGTTC-GTTGGACTAGAAGGTCACGTGATGGAGCAGCTTA-AAG-TGTAT 362 ||||| | |||||| | |||||||| || ||||||||||||||| | | ||| ||||| Sbjct 238 ATGGCATTGACGTTCAGA-GGACTAGAGGGGCACGTGATGGAGCAG-T-ACAAGGTGTAT 294 Query 363 GATAC--CATTTTACAGTTCATTCAAAAGTCCCCGGATGA-TATCGTTTGCAA-GATCAC 418 | || || ||||||||||||| ||||| ||| | | ||| ||||| | |||| Sbjct 295 -A-ACGTCAACTTACAGTTCATTCCCAAGTCGAAGGAAGGCTG-CGTCTGCAAAG-TCAC 350 Query 419 TATGACCTGGGAGAAGCG-A-GCCGATGACTCGCCTGAACCCAG-CAACTACATGAAGTT 475 | ||| ||||||||||| | | || ||||| || ||||| || ||||||| ||||||| Sbjct 351 TCTGATATGGGAGAAGCGCAAG--GAAGACTCCCCCGAACC-AGTCAACTACGTGAAGTT 407 Query 476 GGTCAAGAGTCTC-GCTGCTGACATGGACGCCCACGTTCTCAA 517 |||||||| || | |||||||||||||| |||||| ||||| Sbjct 408 TGTCAAGAG-CTTAGTTGCTGACATGGACGACCACGTCCTCAA 449 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24703650216 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5