BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14060.1
Length=673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493506 jgi|Araly1|493506|fgenesh2_kg.7__2939__AT4G14060.1 933 0.0
Ahg935860 jgi|Araly1|935860|scaffold_500051.1 651 0.0
Ahg322644 jgi|Araly1|322644|fgenesh1_pm.C_scaffold_5000188 608 1e-173
Ahg312489 jgi|Araly1|312489|fgenesh1_pm.C_scaffold_1001269 303 8e-82
> Ahg493506 jgi|Araly1|493506|fgenesh2_kg.7__2939__AT4G14060.1
Length=647
Score = 933 bits (505), Expect = 0.0
Identities = 604/649 (93%), Gaps = 18/649 (3%)
Strand=Plus/Plus
Query 10 AGAAGAAACAAAAAACACACTTCACTCGCTACCGAAGGAAGAGAGAT--AGAGAGAGGGA 67
|||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||
Sbjct 1 AGAAGAAACAAAAAACACACTTCACTAGCTACCAAAGGAAGAGAGATAGAGAGAGAGGGA 60
Query 68 GATGGCTACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCAGCGGAGAAACA 127
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATGGCGACTTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCAGCGGAGAAACA 120
Query 128 CTACAAGCGGTGGAGGAATGAGAACCACCTTTTCCCCGACGCCATCGGCCACCACATCCA 187
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 121 CTACAAGCGGTGGAGGAATGAGAACCACCTCTTCCCCGACGCCATCGGTCACCACATCCA 180
Query 188 AGGTGTCACCGTCCACGACGGCGAATGGGACTCCCATGGAGCCCTCAAGATTTGGAACTA 247
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 AGGTGTCGCCGTCCACGACGGCGAATGGGACTCCCATGGAGCCATCAAGATTTGGAACTA 240
Query 248 CACATTAGATGGGAAACCGGAGATGTTCAAGGAGAGGAGAGAGATAGACGATGAAAACAT 307
|||||||||||||||||||||| |||||||||||||||| |||||||| ||||| || ||
Sbjct 241 CACATTAGATGGGAAACCGGAGGTGTTCAAGGAGAGGAGGGAGATAGATGATGAGAATAT 300
Query 308 GGCGGTAACGTTC-GTTGGACTAGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGATA 366
|||||| |||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 GGCGGTGACGTTCAGA-GGACTAGAAGGTCACGTAATGGAGCAGCTTAAAGTGTATGATA 359
Query 367 CCATTTTACAGTTCATTCAAAAGTCCCC-GGATGATATCGTTTGCAAGATCACTATGACC 425
|||| |||||||||||||||||||| || || ||||||||| ||||||||||||||||||
Sbjct 360 CCATCTTACAGTTCATTCAAAAGTCGCCTGG-TGATATCGTCTGCAAGATCACTATGACC 418
Query 426 TGGGAGAAGCGAGCCGATGACTCGCCTGAACCCAGCAACTACATGAAGTTGGTCAAGAGT 485
|||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 419 TGGGAGAAGCGAACGGATGACTCGCCTGAGCCCAGCAACTACATGAAGTTGGTCAAGAGC 478
Query 486 CTCGCTGCTGACATGGACGCCCACGTTCTCAAAGCCTAAT--CCC---TCTCACCTAAAC 540
||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct 479 CTCGCTGCTGACATGGACGCCCACGTTCTCAAAGCCTAAAAACCCCCCTCTCACGTAAAC 538
Query 541 CCATCATCATCGTGTGTGTA-----A-CTTTGTATGATGTTTTCAATATAATAAATGGGG 594
||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 539 CCATCATCATCGTGTGTGTGTGTGTATCTTT-TATGATGTTTTCAATATAATAAATGGGG 597
Query 595 GTTTGCATGTATGGTTTCATCTACTGTAATATGCTTTGATGTTGTTTAT 643
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTTTGCATGTATGGTTTCATCTACTGTAATATGCTTTGATGTTGTTTAT 646
> Ahg935860 jgi|Araly1|935860|scaffold_500051.1
Length=499
Score = 651 bits (352), Expect = 0.0
Identities = 455/504 (90%), Gaps = 10/504 (2%)
Strand=Plus/Plus
Query 46 GGAAGAGAGATAGAGAGAGGGAGATGGCTACGTCAGGAACATATGTGACGGAGGTTCCTT 105
|||||||| | | |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1 GGAAGAGACA-AAAGAGAGAGAGATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTT 59
Query 106 TGAAAGGATCAGCGGAGAAACACTACAAGCGGTGGAGGAATGAGAACCACCTTTTCCCCG 165
|||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 60 TGAAAGGATCGGCGGAGAAACACTACAAGCGGTGGAGGAGTGAGAACCACCTCTTCCCCG 119
Query 166 ACGCCATCGGCCACCACATCCAAGGTGTCACCGTCCACGACGGCGAATGGGACTCCCATG 225
| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 120 ATGCCGTCGGCCACCACATCCAAGGTGTCACCATCCACGACGGCGAATGGGACTCCCATG 179
Query 226 GAGCCCTCAAGATTTGGAACTACACATTAGATGGGAAACCGGAGATGTTCAAGGAGAGGA 285
||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 180 GAGCCATCAAGATTTGGAACTACACATGCGATGGGAAACCGGAGGTGTTCAAGGAGAGGA 239
Query 286 GAGAGATAGACGATGAAAACATGGCGGTAACGTTC-GTTGGACTAGAAGGTCACGTGATG 344
||||||||||||| || || ||||||||||| ||| | |||||||||||||||||||||
Sbjct 240 GAGAGATAGACGACGAGAATATGGCGGTAACATTCAGA-GGACTAGAAGGTCACGTGATG 298
Query 345 GAGCAGCTTAAAGTGTATGATACCAT-TTTACAGTTCATTCAAAAGTCCCCGGATGATAT 403
|||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||
Sbjct 299 GAGCAGCTTAAAGTGTATGACGTCATCTTT-CAGTTCATTCAAAAGTCCCCTGATGATAT 357
Query 404 CGTTTGCAAGATCACTATGACCTGGGAGAAGCGAGCCGATGAC-TCGCCTGAACCCAGCA 462
| | || ||||||||||||| ||||||||||| | ||||||| | |||||| || ||||
Sbjct 358 CATCTGTAAGATCACTATGATCTGGGAGAAGCAAAACGATGACAT-GCCTGAGCCTAGCA 416
Query 463 ACTACATGAAGTTGGTCAAGAGTCTCGCTGCTGACATGGACGCCCACGTTCTCAAAGCCT 522
||||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||
Sbjct 417 ACTACATGAAGTTCGTCAAGAGCCTCGCTGCTGACATGGATGATCACGTTCTCAAAGCCT 476
Query 523 AA-TCCCTCT-CACCTAAACCCAT 544
|| |||| || ||| | |||||||
Sbjct 477 AAATCCC-CTTCACATCAACCCAT 499
> Ahg322644 jgi|Araly1|322644|fgenesh1_pm.C_scaffold_5000188
Length=456
Score = 608 bits (329), Expect = 1e-173
Identities = 416/458 (91%), Gaps = 6/458 (1%)
Strand=Plus/Plus
Query 69 ATGGCTACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCAGCGGAGAAACAC 128
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCCGCGGAGAAACAC 60
Query 129 TACAAGCGGTGGAGGAATGAGAACCACCTTTTCCCCGACGCCATCGGCCACCACATCCAA 188
|||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 TACAAGCGTTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCACATCCAG 120
Query 189 GGTGTCACCGTCCACGACGGCGAATGGGACTCCCATGGAGCCCTCAAGATTTGGAACTAC 248
||||| ||| |||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 121 GGTGTTACCATCCACGACGGCGAATGGGACTCTCATGGAGCCATCAAGATTTGGAACTAC 180
Query 249 ACATTAGATGGGAAACCGGAGATGTTCAAGGAGAGGAGAGAGATAGACGATGAAAACATG 308
|||| ||||||||| ||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 181 ACATGCGATGGGAAAGCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAATATG 240
Query 309 GCGGTAACGTTC-GTTGGACTAGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGATAC 367
|||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 GCGGTAACGTTCAGA-GGACTGGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGACGT 299
Query 368 CAT-TTTACAGTTCATTCAAAAGTCCCCGGATGATATCGTTTGCAAGATCACTATGACCT 426
||| ||| |||||||||||||||||||| ||||||||| | || ||||||||||||| |
Sbjct 300 CATCTTT-CAGTTCATTCAAAAGTCCCCTGATGATATCATCTGTAAGATCACTATGATTT 358
Query 427 GGGAGAAGCGAGCCGATGAC-TCGCCTGAACCCAGCAACTACATGAAGTTGGTCAAGAGT 485
||||||||| | ||||||| | |||||| |||||||||||||||||||| ||||||||
Sbjct 359 GGGAGAAGCAAAACGATGACAT-GCCTGAGCCCAGCAACTACATGAAGTTCGTCAAGAGC 417
Query 486 CTCGCTGCTGACATGGACGCCCACGTTCTCAAAGCCTA 523
||||| ||||||||||||| |||||||||||||||||
Sbjct 418 CTCGCCGCTGACATGGACGATCACGTTCTCAAAGCCTA 455
> Ahg312489 jgi|Araly1|312489|fgenesh1_pm.C_scaffold_1001269
Length=468
Score = 303 bits (164), Expect = 8e-82
Identities = 368/463 (79%), Gaps = 28/463 (6%)
Strand=Plus/Plus
Query 69 ATGGCTACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCAGCGGAGAAACAC 128
||||| | |||||||||||||||| |||| || || ||||||| || ||||||||||||
Sbjct 1 ATGGCGATGTCAGGAACATATGTGGCGGAAGTACCGCTGAAAGGGTCGGCGGAGAAACAC 60
Query 129 TACAAGCGGTGGAGGAATGAGAACCACCTTTTCCCCGACGCCATCGGCCACCACATCCAA 188
|| | | | ||||||| | ||| |||| ||||| ||||||||||||||||| |||||
Sbjct 61 TATAGGAGATGGAGGAGCCAAAACAACCTCTTCCCGGACGCCATCGGCCACCATGTCCAA 120
Query 189 GGTGTCACCGTCCACGACGGCGAATGGGACTCCCATGGAGCCCTCAAGATT-TGGAACTA 247
||||||||||||||||||||||| ||| | ||||| || || |||| || ||||||||
Sbjct 121 GGTGTCACCGTCCACGACGGCGACTGGAAATCCCACGGTTCCATCAA-ATCCTGGAACTA 179
Query 248 CACATTAGATGGGAAACCGGAGATGT--TCAAGGAGAGGAGAGAGATAGACGATGAAAAC 305
|||| | |||||||| ||||| | || ||||||||| |||||| |||||||| || ||
Sbjct 180 CACACTCGATGGGAAGCCGGA-A-GTCATCAAGGAGAAGAGAGATATAGACGACGAGAAG 237
Query 306 ATGGCGGTAACGTTC-GTTGGACTAGAAGGTCACGTGATGGAGCAGCTTA-AAG-TGTAT 362
||||| | |||||| | |||||||| || ||||||||||||||| | | ||| |||||
Sbjct 238 ATGGCATTGACGTTCAGA-GGACTAGAGGGGCACGTGATGGAGCAG-T-ACAAGGTGTAT 294
Query 363 GATAC--CATTTTACAGTTCATTCAAAAGTCCCCGGATGA-TATCGTTTGCAA-GATCAC 418
| || || ||||||||||||| ||||| ||| | | ||| ||||| | ||||
Sbjct 295 -A-ACGTCAACTTACAGTTCATTCCCAAGTCGAAGGAAGGCTG-CGTCTGCAAAG-TCAC 350
Query 419 TATGACCTGGGAGAAGCG-A-GCCGATGACTCGCCTGAACCCAG-CAACTACATGAAGTT 475
| ||| ||||||||||| | | || ||||| || ||||| || ||||||| |||||||
Sbjct 351 TCTGATATGGGAGAAGCGCAAG--GAAGACTCCCCCGAACC-AGTCAACTACGTGAAGTT 407
Query 476 GGTCAAGAGTCTC-GCTGCTGACATGGACGCCCACGTTCTCAA 517
|||||||| || | |||||||||||||| |||||| |||||
Sbjct 408 TGTCAAGAG-CTTAGTTGCTGACATGGACGACCACGTCCTCAA 449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24703650216
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5