BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14080.1
Length=1663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493503 jgi|Araly1|493503|fgenesh2_kg.7__2936__AT4G14080.1 2309 0.0
> Ahg493503 jgi|Araly1|493503|fgenesh2_kg.7__2936__AT4G14080.1
Length=1620
Score = 2309 bits (1250), Expect = 0.0
Identities = 1531/1660 (92%), Gaps = 46/1660 (3%)
Strand=Plus/Plus
Query 1 ATCTTAAAATCACATTCTGATCATCACCAACACATTGCAAACCAAACCAGACACAAACAC 60
|||||||||||||| |||||||||||||||||||||| | | | || |||||||
Sbjct 1 ATCTTAAAATCACAATCTGATCATCACCAACACATTG-----C--A--A-AC-CAAACAC 49
Query 61 AAAGACATGTCTCTTCTTGCTTTCTTCCTCTTCACCATCCTTGTCTTTTCAAGTTCATGT 120
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 50 AAAGACATGTCTCTTCTTGCTTTCTTCCTCTTCACCCTCCTCGTCTTTTCAAGTTCATGT 109
Query 121 TGTTCCGCAACTCGGTTCCAAGGGCACAGGTACATGCAGAGGAAAACAATGCTAGATTTG 180
|||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 110 TGTTCCGCGGCTCGGTTCCAAGGGCATAAGTACATGCAGAGGAAAACAATGCTAGATTTG 169
Query 181 GCTAGCAAGATTGGTATCAACTATGGAAGA-AGAGGAAACAACCTCCCATCTCCATATCA 239
|||||||||||||||||||||||||||||| | ||||||||||||||||||||| || ||
Sbjct 170 GCTAGCAAGATTGGTATCAACTATGGAAGACA-AGGAAACAACCTCCCATCTCCTTACCA 228
Query 240 ATCCATCAACTTCATCAAATCTATCAAAGCTGGTCATGTCAAGCTCTATGACGCCGATCC 299
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 229 ATCCATCAACTTCATCAAATCCATCAAAGCTGGTCATGTCAAGCTCTATGACGCTGATCC 288
Query 300 AGAGAGTCTCACACTCCTCTCTCAAACCAATCTCTACGTCACCATAACCGTCCCTAACCA 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 289 AGAGAGTCTCACACTCCTCTCTCAAACCAATCTCTACGTCACCATAACAGTCCCTAACCA 348
Query 360 CCAAATCACCGCCCTCAGCTCTAACCAAACCATAGCTGACGAATGGGTCAGAACTAACAT 419
||| |||||| | ||||||||||||||||||| ||||||||||||||||||||| || ||
Sbjct 349 CCAGATCACCTCACTCAGCTCTAACCAAACCACAGCTGACGAATGGGTCAGAACCAATAT 408
Query 420 CCTCCCTTACTATCCACAAACACAAATCCGTTTTGTCCTTGTCGGAAACGAAATCCTCAG 479
|||||||||||||||||||||||||||||| |||||||| || ||||||||||| || ||
Sbjct 409 CCTCCCTTACTATCCACAAACACAAATCCGCTTTGTCCTCGTTGGAAACGAAATACTAAG 468
Query 480 CTACAATT-CTGGGAATGTCTCTGTGAATCTTGTACCGGCGATGCGCAAAATCGTTAACT 538
||| |||| | ||||||||||| | ||| |||||||| ||||||||||||||||| || |
Sbjct 469 CTATAATTAC-GGGAATGTCTCGGCGAACCTTGTACCTGCGATGCGCAAAATCGTGAATT 527
Query 539 CACTCAGA-TTACATGGGATTCACAACATCAAAGTTGGGACACCTCTAGCTATGGATTCT 597
| |||||| || |||||||||||||| |||||||| ||||||||||| || |||||||||
Sbjct 528 CTCTCAGACTT-CATGGGATTCACAATATCAAAGTCGGGACACCTCTTGCCATGGATTCT 586
Query 598 CTCCGGTCGTCGTTTCCTCCATCGAACGGAACATTCCGGGAAGAAATCACCGGACCGGTG 657
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 587 CTCCGGTCTTCCTTTCCTCCTTCGAACGGAACATTCCGGGAAGAAATCACCGGACCGGTG 646
Query 658 ATGTTACCGTTGCTGAAGTTTCTCAACGGAACAAACTCTTACTTCTTCCTTAATGTTCAT 717
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 647 ATGTTACCGTTGCTGAAGTTTCTTAACGGAACAAACTCTTACTTCTTCCTCAATGTTCAT 706
Query 718 CCTTACTTCCGTTGGTCAAGAAACCCCATGAACACCAGTTTGGATTTTGCTCTGTTCCAA 777
||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct 707 CCTTACTTCCGTTGGTCAAAAAATCCCATGAACACTAGTTTGGATTTTGCTCTGTTCCAA 766
Query 778 GG-ACACTCAACCTATACCGATCCTCAAACCGGTTTGGTTTACCGTAATCTTCTAGACCA 836
|| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 767 GGTA-ACTCAACCTATACCGATCCTCAAACCGGTTTGGTTTATCGTAATCTTCTAGACCA 825
Query 837 AATGTTGGATTCGGTTCTCTTCGCCATGACCAAACTCGGTTATCCACATATGCGCCTCGC 896
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 826 AATGTTGGATTCGGTTCTCTTTGCTATGACCAAACTCGGTTACCCACATATGCGCCTCGC 885
Query 897 GATCTCTGAAACCGGATGGCCTAATTTCGGTGACATCGACGAAACCGGAGCCAACATTCT 956
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 886 GATCTCCGAAACCGGATGGCCTAATTTCGGTGACATCGACGAAACCGGTGCCAACATTCT 945
Query 957 CAACGCAGCTACCTATAACCGTAATCTGATCAAGAAGATGAGCGCAAGTCCTCCAATCGG 1016
|||||| |||||||||||||| ||||||||||||||||||| ||||||||| ||||||||
Sbjct 946 CAACGCGGCTACCTATAACCGGAATCTGATCAAGAAGATGACCGCAAGTCCACCAATCGG 1005
Query 1017 TACACCATCAAGACCCGGTTTACCAATACCGACATTTGTTTTCTCCTTATTCAACGAAAA 1076
||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1006 TACTCCATCTAGACCCGGTTTACCTATACCTACATTTGTTTTCTCCTTATTCAACGAAAA 1065
Query 1077 CCAGAAATCCGGTTCGGGGACACAGAGACATTGGGGAATCTTGCATCCCGACGGTTCACC 1136
||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1066 CCAGAAATCCGGTCCGGGAACACAAAGACATTGGGGAATCTTGCATCCCGACGGTTCACC 1125
Query 1137 AATCTACGACGTAGATTTCACCGGTCAAACACCCTTAACCGGTTTCAACCCGTTACCTAA 1196
|||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1126 AATCTACGACATTGATTTCACCGGTCAAAAACCCTTAACCGGTTTCAACCCGTTACCTAA 1185
Query 1197 ACCGACGAACAACGTTCCTTACAAAGGTCAAGTGTGGTGCGTACCAGTCGAAGGAGCCAA 1256
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1186 ACCGACGAACAACGTTCCCTACAAAGGTCAAGTGTGGTGCGTACCAGTCGAAGGCGCCAA 1245
Query 1257 CGAGACTGAGCTTGAAGAAACATTGAGGATGGCTTGTGCCCAAAGCAACACCACTTGTGC 1316
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1246 CGAGACTGAGCTTGAAGAAACTTTGAGGATGGCTTGTGCCCAAAGCAACACCACTTGTGC 1305
Query 1317 AGCTTTAGCTCCTGGGAGAGAATGTTACGAACCAGTCTCCATTTATTGGCATGCAAGCTA 1376
||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1306 GGCTTTAGCTCCTGGGAGAGAATGTTACGAGCCGGTCTCTATTTATTGGCATGCAAGCTA 1365
Query 1377 CGCGCTTAATTCGTACTGGGCTCAGTTTCGTAACCAAAGCATTCAATGTTTCTTCAATGG 1436
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1366 CGCGCTTAGCTCGTACTGGGCTCAGTTTCGTAACCAAAGCATTCAATGTTACTTCAATGG 1425
Query 1437 ATTGGCTCATGAGACAACAACCAACCCTGGAAATGATCGTTGCAAGTTTCCGAGCGTTAC 1496
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 ATTGGCTCATGAGACAACGACCAACCCTGGAAATGATCGTTGCAAGTTTCCGAGCGTTAC 1485
Query 1497 TCTGTGAGGAGGACTTGAGGAAGAAGACACATGATTAAAGCTGGATTATTCGTATAACTC 1556
|||||||||| |||||||| ||||| | || || | || |||| | | ||
Sbjct 1486 TCTGTGAGGA---CTTGAGGAGGAAGA-AGAT-AT-A----TG-ATTA-----A-AGCTT 1528
Query 1557 AATATTGTTCCTTATCttttttttATTATACCTTTTCTGCTTCAAGTTTCGCTATGTTGA 1616
|| | ||| | || ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1529 GAT-TA-TTCGT-AT-TTTTT---ATTATACCTTTTCTGCTTCATGTTTCGCTATGTTGA 1581
Query 1617 Ga-aaaaaaaT-TCAAATAATTAATAAATAGTAAtttttt 1654
|| ||||||| ||||||||||||||||||||| ||||||
Sbjct 1582 GATAAAAAAAAATCAAATAATTAATAAATAGTA-TTTTTT 1620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62353731065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5