BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14090.1
Length=1648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947001 jgi|Araly1|947001|scaffold_703230.1 2078 0.0
Ahg493502 jgi|Araly1|493502|fgenesh2_kg.7__2935__AT4G14100.1 244 1e-63
Ahg476994 jgi|Araly1|476994|fgenesh2_kg.2__2124__AT1G78270.1 71.3 2e-11
> Ahg947001 jgi|Araly1|947001|scaffold_703230.1
Length=1402
Score = 2078 bits (1125), Expect = 0.0
Identities = 1310/1397 (94%), Gaps = 22/1397 (2%)
Strand=Plus/Plus
Query 11 ACATCTTCAAAACATTCTAAAATGGCCACTTCCGTCAATGGTTCCCATCGTCGTCCACAT 70
|||| ||||||||| |||||||||||||||||| ||||||||| || |||||||||||
Sbjct 1 ACATATTCAAAACA-TCTAAAATGGCCACTTCCATCAATGGTT-CC--CGTCGTCCACAC 56
Query 71 TACTTGCTTGTAACATTCCCAGCGCAAGGTCACATCAACCCGGCGCTTCAACTAGCCAAC 130
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 57 TACTTGCTTGTAACATTCCCAGCGCAAGGTCACATAAACCCGGCCCTCCAACTAGCCAAC 116
Query 131 CGCCTCATCCACCACGGTGCAACCGTCACATACTCCACCG-CAGTCTCTGCTCACCGACG 189
||||||||||||||||| |||||||||||||||||||| | || |||| |||||||| ||
Sbjct 117 CGCCTCATCCACCACGGCGCAACCGTCACATACTCCACTGCCA-TCTCAGCTCACCGTCG 175
Query 190 TATGGGCGAGCCACCTTCCACAAAAGGTC-TATCCTTCGCTTGGTTCACCGATGGATTCG 248
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 176 TATGGGCGAGCCACCTTCCACAAAAGG-CTTATCCTTCGCTTGGTTCACCGATGGATTCG 234
Query 249 ACGACGGTCTCAAGTCATTCGAAGACCAGAAAATCTACATGTCCGAACTCAAACGATGTG 308
||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 235 ACGACGGTCTCAAATCCTTCGAAGACCAGAAAATCTACATGTCCGAACTCAAACGCTGTG 294
Query 309 GTTCAAACGCCCTGAGAGACATCATCAAAGCCAATCTTGACGCCACCACCGAAACAGAGC 368
||||||||||||| |||||||| ||||||||||||||||||| || |||||||
Sbjct 295 GTTCAAACGCCCTAAGAGACATTATCAAAGCCAATCTTGACG------CC---ACAGAGC 345
Query 369 CTATCACCGGGGTAATCTACTCTGTTCTCGTCCCGTGGGTTTCTACGGTAGCGCGTGAGT 428
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 346 CTATCACCGGGGTAATCTACTCTGTTCTCGTCCCGTGGGTTTCCACGGTAGCGCGTGAGT 405
Query 429 TTCACCTCCCAACTACACTTCTCTGGATTGAACCAGCTACTGTACTAGACATCTACTACT 488
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TTCACCTCCCTACTACACTTCTCTGGATTGAACCAGCTACTGTACTAGACATCTACTACT 465
Query 489 ACTACTTCAACACCTCTTACAAACATCTCTTCGACGTTGAACCGATTAAATTACCGAAAC 548
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 ACTACTTCAACGCCTCCTACAAACATCTCTTCGACGTTGAACCGATTAAATTACCGAAAC 525
Query 549 TGCCACTGATCACCACCGGTGACCTCCCGTCGTTTCTTCAACCTTCGAAGGCATTACCGT 608
||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 526 TGCCATTGATCACCACCGGAGACCTCCCGTCGTTTCTTCAACCGTCGAAGGCATTACCGT 585
Query 609 CAGCTCTTGTGACTCTAAGAGAACATATCGAAGCTCTCGAAACGGAATCAAACCCTAAGA 668
|||||||||||||| ||| ||| || ||||||||||||||| | ||||||||||||||||
Sbjct 586 CAGCTCTTGTGACTTTAAAAGAGCACATCGAAGCTCTCGAATCCGAATCAAACCCTAAGA 645
Query 669 TTCTTGTTAACACATTCTCTGCTTTGGAACACGATGCTTTAACCTCTGTTGAGAAACTCA 728
| || || ||||| ||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 646 TCCTCGTGAACACTTTCTCTGCTTTAGAACACGATGCTTTAACCTCAGTGGAGAAACTCA 705
Query 729 AGATGATCCCAATCGGACCGTTGGTTTC-T--TCCTCCGAGGGTAAAACCGATCTTTTCA 785
| ||||| ||||| |||||||||||||| | |||||||| |||||||||||||||||||
Sbjct 706 AAATGATTCCAATAGGACCGTTGGTTTCTTCCTCCTCCGACGGTAAAACCGATCTTTTCA 765
Query 786 AATCTTCCGACGAGGATTACACGAAATGGTTAGACTCGAAGCTCGAG-AGATCAGTGATT 844
||||||||||||||||||||||||||||| |||| || ||||||||| || |||||||||
Sbjct 766 AATCTTCCGACGAGGATTACACGAAATGGCTAGATTCAAAGCTCGAGAAG-TCAGTGATT 824
Query 845 TACATTTCCTTAGGCACACACGCCGATGATTTACCAGAGAAACACATGGAAGCGCTTACT 904
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 825 TACATTTCCTTAGGCACACACGCCGATGATTTACCGGAGAAACACATGGAAGCGCTTACT 884
Query 905 CACGGCGTGTTAGCTACAAACAGACCGTTTTTATGGATCGTGAGGGAGAAAAATCCagaa 964
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 CAAGGCGTGTTAGCCACAAACAGACCGTTTTTATGGATCGTGAGGGAGAAAAATCCAGAA 944
Query 965 gagaagaagaagaaTCGGTTTCTTGAATTGATCAGAGGAAGTGATCGAGGATTGGTGGTG 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GAGAAGAAGAAGAATCGGTTTCTTGAATTGATCAGAGGAAGTGATCGAGGATTGGTGGTG 1004
Query 1025 GGATGGTGTTCTCAGACAGCTGTTTTGGCGCATTGTGCTGTGGGATGTTTTGTGACTCAT 1084
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 1005 GGATGGTGTTCTCAGACGGCGGTTTTGGCGCATTGTGCGGTGGGATGTTTTGTGACTCAT 1064
Query 1085 TGTGGTTGGAATTCGACGTTGGAGAGTTTAGAGAGTGGTGTTCCGGTGGTTGCGTTTCCG 1144
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1065 TGTGGTTGGAATTCTACGTTGGAGAGTTTAGAGAGTGGTGTTCCGGTGGTGGCGTTTCCG 1124
Query 1145 CAGTTTGCTGATCAGTGTACAACGGCGAAGCTTGTGGAGGATACGTGGAGGATTGGAGTG 1204
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1125 CAGTTTGCTGATCAGTGTACGACGGCGAAGCTTGTTGAGGATACGTGGAGGATTGGAGTG 1184
Query 1205 AAGGTGAAGGTTGGGGAGGAAGGAGATGTGGATGGGGAGGAGATTAGAAGGTGTTtggag 1264
|||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct 1185 AAGGTGAAGGTTGGAGAGGAAGGAGATGTAGATGGGGATGAGATTAGACGGTGTTTGGAG 1244
Query 1265 aaggtgatgagtggtggagaagaggcggaggagatgagagagaatgcagagaagtggaag 1324
|||||||||||||| ||||| |||||||||||||||||||||||||| | || |||||||
Sbjct 1245 AAGGTGATGAGTGGCGGAGAGGAGGCGGAGGAGATGAGAGAGAATGCGGCGAGGTGGAAG 1304
Query 1325 gCGATGGCTGTTGATGCGGCAGCGGAAGGTGGACCGTCGGATTTGAATCTTAAAGGTTTT 1384
| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1305 GTGATGGCTGTTGATGCGGCGGCGGAAGGTGGACCGTCGGATTTGAATCTTAAGGGTTTT 1364
Query 1385 GTGGACGAGGATGAGTA 1401
||||| |||||||||||
Sbjct 1365 GTGGAAGAGGATGAGTA 1381
> Ahg493502 jgi|Araly1|493502|fgenesh2_kg.7__2935__AT4G14100.1
Length=689
Score = 244 bits (132), Expect = 1e-63
Identities = 155/166 (93%), Gaps = 1/166 (1%)
Strand=Plus/Minus
Query 1483 TTTATTCACTCTTGTACTCCTCCTGATTGGTCATCTAGAAGAAAAGAAGGTCTCGTTAAT 1542
||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct 689 TTTATTCACTCTTGTGCTCCT-CTGATTGATCAACTAGAAGAAAAGAAGGTCTCGTTAAT 631
Query 1543 TAACATTACAAAGCAGCCTTTTCTTTGTATCCTTTAAATTCACTCAAAGCTCCCTTTGTA 1602
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct 630 TAACATTACAAAGCAGCCTTTTCTTTGTATCCTTTAAATTCTCTCAAAGCTCTCTTAGTA 571
Query 1603 GACAAACTCTTCTTCTCTTTGTTGAAACAATAAACCGGTGCTTGCC 1648
|| |||| |||||||||||||||||||||||||||||| || ||||
Sbjct 570 GATAAACCCTTCTTCTCTTTGTTGAAACAATAAACCGGCGCCTGCC 525
> Ahg476994 jgi|Araly1|476994|fgenesh2_kg.2__2124__AT1G78270.1
Length=1535
Score = 71.3 bits (38), Expect = 2e-11
Identities = 91/114 (80%), Gaps = 13/114 (11%)
Strand=Plus/Plus
Query 1008 ATCGAGGATTGGTGGT--G-GGATGGTGTTCTCA-GA-CAGCTGTTTTGGCGCAT-TGTG 1061
||||||||||| || | | |||||||||||||| || || | ||| ||||| | |
Sbjct 1052 ATCGAGGATTGTTGATCAGAGGATGGTGTTCTCAGGAGAAGGTACTTT--CGCATCCG-G 1108
Query 1062 CTG-TGGGATG-TTTTGTGACTCATTGTGGTTGGAATTCGACGTTGGAGAGTTT 1113
| | | ||| | |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1109 C-GATCGGAGGATTTT-TGACTCACTGTGGTTGGAATTCGACGTTGGAGAGTTT 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61782377390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5