BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14100.1
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493502 jgi|Araly1|493502|fgenesh2_kg.7__2935__AT4G14100.1 1018 0.0
> Ahg493502 jgi|Araly1|493502|fgenesh2_kg.7__2935__AT4G14100.1
Length=689
Score = 1018 bits (551), Expect = 0.0
Identities = 646/692 (93%), Gaps = 5/692 (1%)
Strand=Plus/Plus
Query 28 ACACATGGCTTTTAGACGACCACTCATAGTAATCGTTATCTTCAT--TTATATAACCGCC 85
|||||||||||||||||||||||||||| |||||||||||||||| || | ||||||||
Sbjct 1 ACACATGGCTTTTAGACGACCACTCATAATAATCGTTATCTTCATCGTT-T-TAACCGCC 58
Query 86 GGCGTGAAAATCGCCGCCGCGGATGAGCCGGTGCCGACGCCATGGCCACACCAGTTCCAC 145
||||| ||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 59 GGCGTAAAAATCGCCACCGCGGATGAGCCGGTTCCGACGTCATGGCCGCACCAGTTCCAC 118
Query 146 GCGCTAATGTTCATGAATTACTCCGGCGATCTCTCGATGATCGACCTTTGGTACGACTGG 205
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GCGTTACTGTTCATGAATTACTCCGGCGATCTCTCGATGATCGACCTTTGGTACGACTGG 178
Query 206 ACCAACGGTCGTAATTTCAATATCATCCAGGAGCAGCTCGGTGGTATTACCTACGACCTT 265
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 179 ACCAACGGTCGTAATTTCAATATCATCCAGGAGCAGCTCGGTGGGATTACCTACGACCTT 238
Query 266 GAATGGAACAATGGTACTTCCTTCTTTTACACGCTCGACGAGTCAAAATCGTGCCGCTCC 325
||||||||||||||||| |||||| | ||| |||||||||||||||||||||||||||||
Sbjct 239 GAATGGAACAATGGTACCTCCTTCATCTACTCGCTCGACGAGTCAAAATCGTGCCGCTCC 298
Query 326 GGTCAGCTCGAGGTTGGAATACTGCGACCAAACTGGCTAGATGGAGCCAAGTACCTTGGT 385
| |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 299 GCTCAGCTCGAGGTTGGAATTCTGCGACCAAACTGGCTAGATGGAGCCAAGTATCTAGGT 358
Query 386 CAACAGAACGTGAGTGGGTTTCTCTGCAATGTATGGGAGAAGGTAGACTTTATATGGTAC 445
||| | || |||||||||||||| |||||||| |||||||| || |||||||||||||||
Sbjct 359 CAAAAAAATGTGAGTGGGTTTCTTTGCAATGTGTGGGAGAAAGTGGACTTTATATGGTAC 418
Query 446 TATGAAGATGTTGAAACCAAGAGACCCGTGCAATGGATATTCTATACAGGGAGGGAGGCT 505
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 419 TATGAAGATGTTGTAACCAAGAGACCCGTGCAATGGATCTTCTATACAGGGAGGGAAGCT 478
Query 506 CATATAATGACATACGAGGTAGGTGCGGTCCTAGAGGATGAGAAATGGCAAGCACCGGTT 565
||| | |||||||||||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct 479 CATGTGATGACATACGAGGTTGGTGCGGTCCTAGATGATGAGAAATGGCAGGCGCCGGTT 538
Query 566 TATTGTTTCAACAAAGAGAAGAAGAGTTTGTCTACAAAGGGAGCTTTGAGTGAATTTAAA 625
|||||||||||||||||||||||| |||| ||||| ||| |||||||||| |||||||||
Sbjct 539 TATTGTTTCAACAAAGAGAAGAAGGGTTTATCTACTAAGAGAGCTTTGAGAGAATTTAAA 598
Query 626 GGATACAAAGAAAAGGCTGCTTTGTAATGTTAATTAACGAGACCTTCTTTTCTTCTAGAT 685
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 GGATACAAAGAAAAGGCTGCTTTGTAATGTTAATTAACGAGACCTTCTTTTCTTCTAGTT 658
Query 686 GACCAATCAGGAGGAGTACAAGAGTGAATAAA 717
|| ||||||| ||||| |||||||||||||||
Sbjct 659 GATCAATCAG-AGGAGCACAAGAGTGAATAAA 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28820925252
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5