BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14103.2
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890953 jgi|Araly1|890953|Al_scaffold_0007_2939 905 0.0
Ahg907642 jgi|Araly1|907642|Al_scaffold_0002_723 477 1e-133
Ahg952110 jgi|Araly1|952110|scaffold_3700005.1 139 6e-32
> Ahg890953 jgi|Araly1|890953|Al_scaffold_0007_2939
Length=684
Score = 905 bits (490), Expect = 0.0
Identities = 598/650 (92%), Gaps = 8/650 (1%)
Strand=Plus/Plus
Query 314 GAGATGGCATTGATCCAGTCCGTATCATTCCTTGGATAAATAATGTGTTGGAACGGGGTG 373
|||||||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 5 GAGATGGCGTTGATCCAGTCCGTATCATTCCTTGGATACACAATGTGTTGGAACGCGGTG 64
Query 374 TATCCGATCTTGATCTACACCTGAATTTGGAATCAGAATTTCTGCTTCCTTCACAAGTCT 433
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 65 TATCCGATCTTTATCTACACCTGAATTTGGAATCAGAATTTCTGCTTCCTTCAAAAGTCT 124
Query 434 ACTTGTGCAAGACACTGGTTTGGCTGAAGCTA-AGGTTTGGGCTATATCCCACGATTGAT 492
||||| |||||||||||||| |||||||| || | ||||||| ||||||||| ||||||
Sbjct 125 ACTTGAGCAAGACACTGGTTAGGCTGAAGATATA-TTTTGGGCAATATCCCACCATTGAT 183
Query 493 GTTGAAGATGTTCATCTCCCAAAGCTTAAGACGCTTTATATTGAGGCAACCCATTTTGAA 552
|||||||||||||||||||||||||||||||| || ||||||||| ||| ||||||||||
Sbjct 184 GTTGAAGATGTTCATCTCCCAAAGCTTAAGACTCTCTATATTGAGTCAAGCCATTTTGAA 243
Query 553 GAGCATGGTGTTGGGCTTACCAAGCTTCTTTCTGGTTGTCCCATGCTTGAGGATTTAGTT 612
|||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||
Sbjct 244 AAGCATGGTATTGGGCTTAGCAAGTTTCTTTCTGGTTGTTCCATGCTTGAGGATTTAGTT 303
Query 613 CTTGATGATATATCTTGGTTCATTTGGGATTTTGCCTCGGTGTCTGTCCCAACTCTCAAG 672
|| || ||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 304 CTGGAAGATATATCTTGGTTCTTTTGGGATTTCGCGTCGGTGTCTGTCCCAACTCTCAAG 363
Query 673 AGGCTAAGGTTTAGCTGGCAAGAGCGAGATGAGTTTCCAAAGAGTGTGT-TGTTAGATAC 731
||||||| |||| ||||| |||||||| |||| |||||||||||||| | | || |||||
Sbjct 364 AGGCTAACGTTTTGCTGGGAAGAGCGATATGATTTTCCAAAGAGTGTATCTATT-GATAC 422
Query 732 TCCGAATCTTGTATACTTGAAGTTTACTGATACTGTTGCAGGCAAGTATCCGAAAGTGAA 791
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 423 TCCAAATCTTGTCTACTTGAAGTTTACTGACACTGTTGCAGGCAAGTATCCGAAAGTGAA 482
Query 792 TTTGGATTCCCTTGTTGAAGCTCATATCGATCTTCGCTTGTTGAAGCC-TCTATTGATAA 850
||| ||||| || |||||||| ||||||||||||| |||||||||||| | ||||||||
Sbjct 483 TTTCGATTCGCTGGTTGAAGCCCATATCGATCTTCACTTGTTGAAGCCAT-TATTGATAC 541
Query 851 ATTACCATCAAGGTTATGGGGAAAATGATATGGTTGGCAATGCTACAGATTTTATAATGC 910
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 542 AGTACCATCAAGGTTATGGGGAAAATGATATGGTTGGCAATGCAACAGATTTTATAATGC 601
Query 911 GTA-TATGCAATGTGAAGACTCTTTATCTATCTGCCAACACTCTTCAGGT 959
| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 G-ACTATGCAATGTGAAGACTCTTTATCTATCTGCCAACACTCTTCAGGT 650
> Ahg907642 jgi|Araly1|907642|Al_scaffold_0002_723
Length=1050
Score = 477 bits (258), Expect = 1e-133
Identities = 501/615 (81%), Gaps = 30/615 (5%)
Strand=Plus/Plus
Query 230 TTTCTACAAGTTTTATGGATTTTGTGGATAGA-GTGTTGGCTTTGCAAGGTAATTCTCCT 288
|||||||||||||||||| |||||||||| | |||||||| |||||||| |||||||||
Sbjct 116 TTTCTACAAGTTTTATGGCTTTTGTGGAT-CATGTGTTGGCATTGCAAGGCAATTCTCCT 174
Query 289 CTACACAAGTTCTCTCTAAAGATT-GGAGATGGCATTG---ATCCAGTCCGTATCATTCC 344
||||||||||||||||||||| || ||||| || ||| ||| | ||||| ||||||
Sbjct 175 CTACACAAGTTCTCTCTAAAG-TTCGGAGACGGTGTTGTTGATCGATTCCGTGTCATTCG 233
Query 345 TTGGATAAAT-AATGTGTTGGAACGGGGTGTATCCGATCTTGATCTACACCTGAATTTGG 403
||||||| | || ||||||||||| || |||||||||||||| ||| || || |||||
Sbjct 234 TTGGATAC-TCAAGGTGTTGGAACGCGGAGTATCCGATCTTGAACTAGACATGCATTTGA 292
Query 404 AATCAGAA-T-TTCTGCTTCCTTCACAAG-TCTACTTGTGCAAGACACTGGTTTGGCTGA 460
||| ||| | ||| ||||||||| ||| ||| ||| || ||||||| ||| ||||||
Sbjct 293 AATG-GAAATCTTCA-CTTCCTTCA-AAGATCTTTTTGAGCGAGACACTCGTTAGGCTGA 349
Query 461 AGCTAAGGTTTGGG-CTATATCCC-ACGA-TTGATGTTGAAGATGTTCATCTCCCAAAGC 517
| ||||| | ||| | | ||| | || |||||||||| ||||||||||| || ||||
Sbjct 350 AACTAAG-TGTGGATCG-TGGCCCGA-GAATTGATGTTGATGATGTTCATCTTCCTAAGC 406
Query 518 TTAAGACGCTTTATATTGAGGCAACCCATTTTGAAGAGCATGGTGTTGGGCTTACCAAGC 577
||||||| || |||||||| || | | |||||| |||||||| ||||||||| |||||
Sbjct 407 TTAAGACTCTCCATATTGAGTCAGTCAAATTTGAACAGCATGGTATTGGGCTTAACAAGC 466
Query 578 TTCTTTCTGGTTGTCCCATGCTTGAGGATTTAGTTCTTGA-TGATATATCTTGGTTCATT 636
||||||||||||||| ||| |||||||| ||| |||| || | |||||||||||| | |
Sbjct 467 TTCTTTCTGGTTGTCACATACTTGAGGAGTTAATTCTGGAAT-ATATATCTTGGTGCCTA 525
Query 637 TGGGATTTTGCCTCGGTGTCT-GTCCCAACTCTCAAGAGGCTAAGGTTTAGCTGGCAAG- 694
||||| |||| ||| |||||| | | ||||||||||||| |||| |||| || || ||
Sbjct 526 TGGGAATTTGTCTCTGTGTCTAG-CACAACTCTCAAGAGACTAACGTTTTGCGGGGAACT 584
Query 695 A--GCGAGATGAGTTTCCAAAGAGTGTGTTGTTAGATACTCCGAATCTTGTATACTTGAA 752
| || ||||||| ||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 585 AATGCAAGATGAGAATCCGATTAGTGTGTTGTTAGATACTCCGAATCTTGTCTACTTGAA 644
Query 753 GTTTACTGATACTGTTGCAGG-CAAGTATCCGAAAGTGAATTTGGATTCCCTTGTTGAAG 811
|||||||||| | |||| || | ||||| | |||||||| || ||||| ||||||||||
Sbjct 645 GTTTACTGATGTTATTGC-GGACGAGTATTCAAAAGTGAACTTCGATTCGCTTGTTGAAG 703
Query 812 CTCATATCGATCTTC 826
| |||||| ||||||
Sbjct 704 CCCATATCAATCTTC 718
Score = 137 bits (74), Expect = 2e-31
Identities = 163/204 (80%), Gaps = 13/204 (6%)
Strand=Plus/Plus
Query 1134 TGACATGGAGAAGCAGAGAGAGC-AGATCAAGTA-TTTCTTGGAGACAATGCCGAATCTT 1191
||| || |||||| ||| ||| | || ||||| | |||| | ||||| |||||| || ||
Sbjct 846 TGAGATAGAGAAGAAGATAGACCAAG-TCAAGCACTTTC-TAGAGACGATGCCGTATGTT 903
Query 1192 GAG-AAGATGATTTTGTACTACAATACACCAAGTGTTGAAGATGTAACTGAAGTTT-CAA 1249
||| || |||| || ||||||| ||||||| || ||| ||||| | |||||||| | |
Sbjct 904 GAGCAA-CTGATATTACACTACAACACACCAATTGATGAGGATGTGATTGAAGTTTACCA 962
Query 1250 GCCGACTTCAGAGGCTAGTTTCTAAAGTAGCTTCATCGACA-TGTATTGTCCAACTAATC 1308
| | ||||||||||| | | |||||||||||||||| | | || | |||||||||||
Sbjct 963 G-CAACTTCAGAGGC-A--TCCTAAAGTAGCTTCATCCA-AGTGCAAACTCCAACTAATC 1017
Query 1309 TCTGATAACCTCAGCTTGTCATCT 1332
||||||||||||||||||||||||
Sbjct 1018 TCTGATAACCTCAGCTTGTCATCT 1041
> Ahg952110 jgi|Araly1|952110|scaffold_3700005.1
Length=444
Score = 139 bits (75), Expect = 6e-32
Identities = 277/369 (75%), Gaps = 35/369 (9%)
Strand=Plus/Plus
Query 27 GAAAAGGATGGATCTTAGTGGTTCTAGAGATGTAATCAGTAGTTTACC-GGATGACATTA 85
||||| ||||||| || |||||| | |||| ||||||| | | |||| | | | |||
Sbjct 15 GAAAAAGATGGAT-TT--TGGTTCCAAAGATATAATCAGCACTCTACCAGAACCTC-TTA 70
Query 86 GTTCCCATATCTTGTCCTT-CCTCCCCACTAAAGAAGCTGCTTCCACTTCGGTTCTTTCG 144
|| ||| ||||||| ||| || ||||| ||||||||||||| || ||| |||| |||
Sbjct 71 TTTGCCAAATCTTGT-CTTGTCTTCCCACAAAAGAAGCTGCTTTAACATCGCTTCTCTCG 129
Query 145 AAAAAATGGCGGTATCTCTTTGCTTTTGTC-CCTAATCTTGA-TTTGGATGACTC-T-GT 200
|||||||||||||||||||||||||| | || |||||||| |||| || |||| | |
Sbjct 130 AAAAAATGGCGGTATCTCTTTGCTTTCA-CACCAAATCTTGAGTTTG-ATTACTCCTCGG 187
Query 201 T-TATCTGAATCCTGA-GAATG-AGA-C------GGA--A-ATTTC-TACAA-GTTTTAT 245
| |||||| || ||| || | | | | ||| | ||| | || || |||| |
Sbjct 188 TATATCTGCATATTGAAGAGGGTAAAGCAAAAAAGGATGAGATT-CATAGAATGTTT-AC 245
Query 246 GGATTTTGTGGATAGAGTGTTGGCTTTGCAAGGTAATTCTCCTCTACACAAGTTCTCTCT 305
||||| ||||||||||| ||||||||||||| |||||| ||| | | ||||||||| |
Sbjct 246 AGATTTCGTGGATAGAGTATTGGCTTTGCAAGCAAATTCTACTCCAAATAAGTTCTCTTT 305
Query 306 AAAGAT-TGGAGATGGCATTGATCCAGTCCGTATCATTCCTTGGATAAATAAT-GTGTTG 363
||| | |||| || |||||||||| || |||||| ||||||| ||| ||||||
Sbjct 306 CAAG-TGTGGACCTGATGTTGATCCAGTTTGTGTCATTCGTTGGATAT-TAACCGTGTTG 363
Query 364 GAACG-GGG 371
||||| |||
Sbjct 364 GAACGTGGG 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5