BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14110.1
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946999 jgi|Araly1|946999|scaffold_703228.1 968 0.0
> Ahg946999 jgi|Araly1|946999|scaffold_703228.1
Length=635
Score = 968 bits (524), Expect = 0.0
Identities = 600/637 (94%), Gaps = 4/637 (1%)
Strand=Plus/Plus
Query 34 TAGTGCAATCGAAACAAGTCATGGATCTTTCGCCTGTTAAGGAAGCTTTGGCCGCCAAAT 93
||||| ||||||| | |||||||||||||| || || |||||||||||||||| ||||
Sbjct 1 TAGTGAAATCGAACCCTGTCATGGATCTTTCTCCAGTGAAGGAAGCTTTGGCCGTTAAAT 60
Query 94 CCTTTGACAAAATCGCCGATATCTGCGATACTCTCATGCTTCAGGTTGCTTCCGAAGGAA 153
||||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct 61 CCTTTGATAAAATCGCTGAAATCTGCGATAATCTCATGCTTCAGGTTGCTTCCGAAGGAA 120
Query 154 TTGAATATCATGATGATTGGCCTTACGCAATCCATCTTCTGGGTTACTTTTACGTTGACG 213
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 TTGATTATCATGATGATTGGCCTTACGCAATCCATCTTCTGGGTTACTTTTACGTCGACG 180
Query 214 ATTGTGATAGCGCACGTTTCCTCTGGAAAAGGATACCTACAGCTATCAAGGAGAGGAAGC 273
|||||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 181 ATTGTGATAGTGCCCGTTTTCTCTGGAAAACGATACCTACAGCTATCAAGGAGAGGAAGC 240
Query 274 CTGAAGTTGTTGCAGCTTGGGGGATTGGTCAGAAGCTGTGGACACACGACTATGCAGGTG 333
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGAAGTTGTTGCAGCTTGGAAGATTGGTCAGAAGCTGTGGACACACGACTATGCAGGTG 300
Query 334 TATATGAAGCTATTCGGGGTTATGATTGGAGTCAAGAAGCTAAAGATATGGTTGCTGCCT 393
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 TATATGGAGCTATTCGGGGTTATGATTGGAGTCAAGAAGCTAAAGAGATGGTTGCTGCCT 360
Query 394 TCTCAGATCTTTACACAAAAAGGATGTTTCAGCTTTTGTTGTCTGCCTACTCCACAATTA 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTCAGATCTTTACACAAAAAGGATGTTTCAGCTTTTGTTGTCTGCCTACTCCACAATTA 420
Query 454 CCATCCATGATTTAGCTCTTTTCCTAGGGATGACGGAGGATGATGCCACAACTTATGTTG 513
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 CCATTCATGATTTAGCTCTATTCCTTGGGATGACGGAGGATGATGCCACAACTTATGTTG 480
Query 514 TAGAGAATGGATGGACAGTGGATGCAGCTTCTCAAATGGCGAGTGTGAAGAAACAAGCTG 573
|||||||||||||||||||||||||| |||||||||||| || |||||||||| ||||||
Sbjct 481 TAGAGAATGGATGGACAGTGGATGCAACTTCTCAAATGGTGACTGTGAAGAAAGAAGCTG 540
Query 574 TTAAAAGAGAGCAAAAGGTGGATTCATCGAAGCTACAACGCTTGACGGAGTATGTGTTCC 633
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 TTAAAAGAGAGCAAAAGGTGGATTCATCGAAGCTGCAACGCTTGACGGAGTATGTGTTCC 600
Query 634 ACCTTGAACATTAAAACTAAGTG-CC-GATCTCCTAT 668
||||||||||||| ||| ||| | || | ||||||||
Sbjct 601 ACCTTGAACATTAGAACAAAG-GACCAG-TCTCCTAT 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29926489845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5