BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14120.1
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890951 jgi|Araly1|890951|Al_scaffold_0007_2937 475 3e-133
> Ahg890951 jgi|Araly1|890951|Al_scaffold_0007_2937
Length=987
Score = 475 bits (257), Expect = 3e-133
Identities = 508/619 (82%), Gaps = 58/619 (9%)
Strand=Plus/Plus
Query 569 GGTTCTATCAATCAAGAGATCAGTGAGGTCTCTGGGAAGAAAGTTGGTACCAATCTCGGC 628
|||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 391 GGTTCTATCAATCAAGAGATCAATGGGGTCTCTGGGAAGAAAGTTGGTACCAATCTTGGC 450
Query 629 AGCAAAGTGATTCGTCATCCGGAAAAGATTTTCAAGAACCCTGGCTCTGTGAGCTATAGA 688
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 451 AGCAAAGTGATTCGTCATCCGGAAAAGATTTTTAAGAACCCTGGCTCGGTGAGCTATAGA 510
Query 689 AGAATGCTTCCTTACTTGATGGAAGCTGCAGATGTTACCCGAGATGGTGATGCAAAAGAT 748
|||||||||||||| ||||||||||||||||||| ||| |||||| |||||| || |||
Sbjct 511 AGAATGCTTCCTTATTTGATGGAAGCTGCAGATGGTACTAGAGATGCTGATGCGAATGAT 570
Query 749 CCTAAGGA-TGAAAGAGGTGAATTGATGGCAGCAAATTACCGACTTCCTGAAACCG---- 803
| ||| || | |||||||||||| ||||||| | || ||||||||| ||||||||
Sbjct 571 C-TAAAGAATCAAAGAGGTGAATCGATGGCAACGAAGAACCGACTTCTTGAAACCGAGCC 629
Query 804 TAT----C--TG--CCAATAGCTTTGTTAAA------GCTCA---T------GGAAACAA 840
| | | || |||||| |||||||||| ||||| | |||||||
Sbjct 630 TGTTTGGCAATGTACCAATAACTTTGTTAAACCATCAGCTCAAAGTTTACATGGAAACAT 689
Query 841 TAGCCCTTTCAAGAAGATGACTTCATCCAGTGGCAACAAAATTTC-TCTGTGCTGCCGG- 898
|||||||||||||| ||||||||||| | ||||| ||||||||| | |||||| ||
Sbjct 690 TAGCCCTTTCAAGACTATGACTTCATCTAATGGCACCAAAATTTCGT-TGTGCT-CCAAA 747
Query 899 CGCAAGCTATTTAAAGTGCCAGGTTCTGTAAATTACAGAAGAATGCTTTCATATCTCAAA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 CGCAAGCTATTTAAAGTGCCAGGTTCTGTAAATTACAGAAGAATGCTTTCATATCTCAAA 807
Query 959 GAGAACTCAGAGGATAATCATG-GAACTCCTGAAACCACGCATACAGATCCTCAGAAGAA 1017
||||||||||||| ||||| || || | |||||||||| | || | || |
Sbjct 808 GAGAACTCAGAGGGTAATCCTGTGA-CGCCTGAAACCA-G--TA-A--TC----G----- 851
Query 1018 TATAGAGGAGA-ATGCTTCAGCTATTGAGGCTAAAGGGGCATCAAATGAAGTTACAGATT 1076
|| |||||| | | ||| |||| | |||| ||||||||||||||| ||||| || |||||
Sbjct 852 TACAGAGGAAACA-GCTCCAGCCACTGAGACTAAAGGGGCATCAAGTGAAGCTAGAGATT 910
Query 1077 TAGA-TACATGCTCTAACAACGTTGA-GACGCCACTAGCTGATCCAAAG-AATGAGCAAG 1133
| || ||||||||||||| | ||||| | ||||||| ||||| | || || || || |
Sbjct 911 T-GAATACATGCTCTAACGATGTTGAAG-CGCCACTCTCTGATTTAGAGGAACGAACAGG 968
Query 1134 AAACTCAA-CTTTTGTTAG 1151
|| ||||| ||||||||||
Sbjct 969 AAGCTCAAACTTTTGTTAG 987
Score = 436 bits (236), Expect = 1e-121
Identities = 309/345 (90%), Gaps = 2/345 (1%)
Strand=Plus/Plus
Query 62 ATGGCCGAATCAGATCCTATATTGAGGAAGAAGATGCGATTTTCGTCTTCTTCAGTTCGT 121
||||| |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGAATCAGATCATATCTTGGGGAAGAAGATGCGATTTTCGTCTTCTTCAGTTCGT 60
Query 122 TATACTACCTCTCAGAACCTTATGGCAAGCAAATTACGAACTCAGAGCAATCGTTCCTCC 181
|| |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TACACTACCTCCCATAACCTTATGGCAAGCAAATTACGGACTCAGAGCAATCGTTCCTCC 120
Query 182 GTTCGATTTGCATCCCCATTGTCTCACATTGTCACGGATCTTCGTCACCATCATGCGTCA 241
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTCGATTTGCATCCTCAGTGTCTCACATTGTCACGGATCTTCGTCACCATCATGCGTCA 180
Query 242 CCGATCAAAGGGAAAATTGTTACTCAAA-TGCCCCGAACTTGTTCTCGTGTCACCGTGAA 300
|| ||| |||||| | | ||| ||| | || || | |||||||||||| | |||||
Sbjct 181 TCGCTCACCGGGAAACTCGAGACTAAAAAT-CCTCGGTCGTGTTCTCGTGTCTCGGTGAA 239
Query 301 GAATCTGTGTCTCAGACGCGTATTCTCTCCTAGTTCCATCTCTAGTGATTGGGACTTTCA 360
|||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||
Sbjct 240 GAATCTGTGTCTCAGACGCGTATTCTCTCCGAGTTCGATTTCTAACGATTGGGACTTTCA 299
Query 361 TGTGAAAGGGGGAAATCTAACCAAGGAGCTAAATGTGGAATCTCC 405
||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 300 CATGAAAGGGGAAAATCAAACCAAGGAGCTAAATGTGGAATCTCC 344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49483546266
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5