BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14130.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493497 jgi|Araly1|493497|fgenesh2_kg.7__2930__AT4G14130.1 1637 0.0
> Ahg493497 jgi|Araly1|493497|fgenesh2_kg.7__2930__AT4G14130.1
Length=1056
Score = 1637 bits (886), Expect = 0.0
Identities = 1005/1062 (95%), Gaps = 9/1062 (1%)
Strand=Plus/Plus
Query 1 ATCTCACACCAAAACACAAAGCTCTCATCTTCTTTTAGTTTCCAAACTCACCCCCACAAC 60
||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1 ATCTCACACCAAAACACAAAGCT-TCATCTTC-TTTAGTTTCCAAACTCA-CCCCACAAC 57
Query 61 TTTCATTTCTATCAACCAAACCCAAATGGGTCCAAGTTCGAGCCTCACCACCATCGTGGC 120
||||||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||||
Sbjct 58 TTTCATTTCTACCAACCAAACCCAAATGGGTCGAAGCTCGAGCCTCACCACCGTCGTGGC 117
Query 121 GACTGTTCTTCTTGTGACATTGTTCGGTTCGGCCTACGCAAGCAACTTCTTCGACGAGTT 180
| || ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 118 GGCTATTCTTCTGGTGACATTGGTCGGTTCGGCCTACGCAAGCAACTTCTTCGACGAGTT 177
Query 181 TGACCTCACTTGGGGTGACCACAGAGGCAAAATCTTCAACGGAGGAAATATGCTGTCTTT 240
||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 178 TGACCTCACTTGGGGTGACCACAGAGGCAAAATCTTCAACGGAGGGACGATGTTGTCTTT 237
Query 241 GTCGCTGGACCAG-GTTTCCGGGTCAGGTTTCAAATCCAAAAAAGAGTATTTGTTCGGTC 299
||| |||||| | ||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 238 GTCATTGGACC-GAGTTTCCGGGTCGGGTTTCAAATCCAAGAAAGAGTATTTGTTTGGTC 296
Query 300 GGATCGATATGCAGCTCAAACTTGTCGCCGGAAACTCGGCCGGCACCGTCACTGCTTACT 359
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 297 GGATCGATATGCAGCTCAAACTCGTCGCCGGAAACTCTGCCGGCACCGTCACTGCTTACT 356
Query 360 ACTTGTCTTCACAAGGAGCAACACATGACGAGATAGACTTTGAGTTTCTAGGTAACGAGA 419
||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 357 ACTTGTCATCTCAAGGAGCAACACATGACGAGATAGACTTTGAGTTTCTAGGGAACGAAA 416
Query 420 CAGGGAAGCCTTATGTTCTTCACACCAATGTCTTTGCTCAAGGGAAAGGAGACAGAGAGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CAGGGAAGCCTTATGTTCTTCACACCAATGTCTTTGCTCAAGGGAAAGGAGACAGAGAGC 476
Query 480 AACAGTTTTATCTCTGGTTCGA-CCCAACCAAGAACTTCCACACTTACTCCATTGTCTGG 538
|||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 477 AACAGTTTTATCTCTGGTTCGATCCC-ACCAAGAATTTCCACACTTACTCCATTGTCTGG 535
Query 539 AGACCCCAACACATCATATTCTTGGTGGACAATTTACCCATTAGAGTGTTCAACAATGCA 598
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 536 AGACCCCAACACATCATATTCTTGGTGGACAATTTACCCATTAGAGTCTTTAACAATGCA 595
Query 599 GAGAAGCTCGGCGTTCCTTTCCCAAAGAGTCAACCCATGAGGATCTACTCTAGCCTGTGG 658
||| |||||| ||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 596 GAGCGGCTCGGTGTTCCTTTCCCAAAGAGCCAACCCATGAGGATCTACTCGAGTCTGTGG 655
Query 659 AATGCAGACGATTGGGCCACGAGAGGTGGTCTAGTCAAGACTGACTGGTCCAAGGCTCCT 718
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 656 AATGCAGATGATTGGGCCACGAGAGGCGGTCTAGTCAAGACTGACTGGTCCAAGGCTCCT 715
Query 719 TTCACAGCTTACTACAGAGGATTCAACGCTGCGGCTTGCACAGCCTCTTCAGGATGTGAC 778
||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||| ||
Sbjct 716 TTCACAGCTTACTACAGAGGATTCAACGCAGCGGCTTGCACCGTCTCTTCAGGCTGTTAC 775
Query 779 CCTAAATTCAAGAGTTCTTTTGGTGATGGTAAATTGCAAGTGGCAACCGAGCTCAATGCT 838
||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct 776 CCTAAATTCAAGAGTTCACTCGGTGATGGTAAATTGCAAGTGGCAAGCGAGCTCAATGCT 835
Query 839 TATGGCAGGAGGAGACTCAGATGGGTTCAGAAATACTTCATGATCTATAATTATTGCTCT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TATGGCAGGAGGAGACTCAGATGGGTTCAGAAATACTTCATGATCTATAATTATTGCTCT 895
Query 899 GATCTCAAAAGGTTCCCTCGTGGATTCCCTCCAGAATGCAAGA-AGTCCAGAGTCTGATG 957
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 896 GATCTCAAAAGGTTCCCTCGTGGATTCCCTCCAGAATGCAAGAGA-TCCAGAGTCTGATG 954
Query 958 AACACATATTACCTCATATTTCTCTGCTTGTTTGATGCAATTCTTAAATTCCTCTGTTAT 1017
|| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 955 AAAACATATTATCTCATATTTCTCTGCTTGTTTGATGCAATTCTTAAATCCCTCTGTTAT 1014
Query 1018 TCCATTGTACATTGTCAAGATCAATAAAGCATTCCTGGTTTC 1059
||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1015 TCCATTGTACATTGTCAAGGTCAATAAAGCATTCCTGCTTTC 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5