BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G14145.1

Length=798
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg355402 jgi|Araly1|355402|fgenesh1_pg.C_scaffold_7002575           649    0.0  


> Ahg355402 jgi|Araly1|355402|fgenesh1_pg.C_scaffold_7002575
Length=405

 Score =  649 bits (351),  Expect = 0.0
 Identities = 387/405 (96%), Gaps = 0/405 (0%)
 Strand=Plus/Plus

Query  185  ATGACAACAATCGAAACCGGTCAGAAAACTCAAAAGTCTTCTCCTTCCGGTTCTGGTACT  244
            ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | ||
Sbjct  1    ATGACAACAATCGAAACCGGTCAGAAAACTCAAAAGTCTCCTCCTTCTGGTTCTGCTGCT  60

Query  245  ACCCCTACTGGTACTCTTAAGCAGTCATCAGCATCGTTTAAAAGGTGGGGAAGGAGACAC  304
             |  ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  61   GCGGCTACTGGTACTCTCAAGCAGTCATCGGCATCGTTTAAAAGGTGGGGAAGGAGACAC  120

Query  305  CCGTTTGTAAGATATGGACTTCCGATGATATCTCTCACTGTATTTGGAGCCCTCGGACTC  364
            || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCATTTGTACGATATGGACTTCCGATGATATCTCTCACTGTATTTGGAGCCCTCGGACTC  180

Query  365  GGCCAACTCCTTCAAGGCAGTAAGGATATTGCAAAGGTAAAAGATGACCAAGAATGGGAG  424
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  181  GGCCAACTCCTTCAAGGCAGTAAGGATATTGCAAAGGTAAAAGATGACCAGGAATGGGAG  240

Query  425  ATTATAGAAACAAGAAAGGCACTTTCGAGAACAGGACCTGTCGATGCCTATAAACCTAAA  484
            |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  241  ATTATAGAGACAAGAAAGGCGCTTTCGAGAACAGGACCTGTCGATGCTTATAAACCTAAA  300

Query  485  AACACATCCATTGAAGATGAGCTCAAGGCTATGCAAGAGAAGGTGGACATAAACACGTAC  544
            ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct  301  AACACATCCATCGAAGATGAGCTTAAGGCTATGCAACAGAAGGTGGACATAAACACGTAC  360

Query  545  GAGTACAAGAAAATTCCAAAGCTAAACGAAAGCAAGTCGAGTTAA  589
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GAGTACAAGAAAATTCCAAAGCTAAACGAAAGCAAGTCGAGTTAA  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29469014841


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5