BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G14147.2

Length=940
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg330101 jgi|Araly1|330101|fgenesh1_pm.C_scaffold_7002328           785    0.0  
  Ahg946994 jgi|Araly1|946994|scaffold_703223.1                        137    1e-31


> Ahg330101 jgi|Araly1|330101|fgenesh1_pm.C_scaffold_7002328
Length=516

 Score =  785 bits (425),  Expect = 0.0
 Identities = 487/517 (94%), Gaps = 4/517 (1%)
 Strand=Plus/Plus

Query  155  ATGGCAAACTCATTACGGCTGTATCTAGCATGCATAAAAAATACACTCGAGGCTGCCATG  214
            |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct  1    ATGGCAAACTCATTACGGTTGTATCTAGCATGCATAAAAAATACACTCGAGGCAGCCATG  60

Query  215  TGCTTACAGAATTTTCCTTGTCAAGAAGTTGAAAGGCATAATAAACCAGAGGTTGAATTA  274
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  61   TGCTTACAGAACTTTCCTTGTCAAGAAGTTGAAAGGCATAATAAACCAGAGGTTGAACTA  120

Query  275  AAGACGAGCCCAGAACTTTTGCTAAATCCTGTTTTAATATGCCGAAATGAGGCTGAAAAG  334
            ||||| |||||||||||||| ||||||||||| || |||||||| |||||||||||||||
Sbjct  121  AAGACAAGCCCAGAACTTTTACTAAATCCTGTATTGATATGCCGTAATGAGGCTGAAAAG  180

Query  335  TGTTTAATAGAAACATCTATAAATTCACTCCGGATAAGCCTCAAGGTCAAGCAAGCGGAT  394
            |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct  181  TGTTTAATAGAAACATCTATAAATTCACTCAGGATAAGCCTCAAGGTCAAACAAGCGGAT  240

Query  395  GAACTTGAAAACATACTAACCAAAAAATTTCTCAGATTCTTGTCCATGAGGGCAGAAGCT  454
            |||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||
Sbjct  241  GAACTTGAAAACATACTAACCAAAAAGTTCCTTAGATTTTTGTCCATGAGGGCAGAAGCT  300

Query  455  TTTCAAGTACTGAGGAGGAAGCCAGTGCAGGGCTATGACATAAGCTTTCTTATAACAAAC  514
            ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  301  TTTCAAGTACTGAGGAGGAAGCCAGTGCAGGGCTATGACATTAGCTTTCTAATAACAAAC  360

Query  515  TACCACTGCGAAGAGATGCAGAAACAGAAGCTAATTGATTTCATTATTCAGTTTATGGAG  574
            ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  361  TACCACTGCGAGGAGATGCAGAAGCAGAAGCTAATCGATTTCATTATTCAGTTTATGGAG  420

Query  575  GCAAG--ATATAGAGAAAGAAATAAGGGACTTGAAGGAGTCAGTGAATACAAGAGGAAGA  632
            |||||  ||||||||||||||||||| |||||||||||||||||||| || |||||| ||
Sbjct  421  GCAAGTGATATAGAGAAAGAAATAAGAGACTTGAAGGAGTCAGTGAACACCAGAGGACGA  480

Query  633  CTCGTTGCTACGGAGTT-CTTGAAACAGTTCATGTAA  668
            |||||||| || ||||| || ||||||||||||||||
Sbjct  481  CTCGTTGCGACAGAGTTTCT-GAAACAGTTCATGTAA  516


> Ahg946994 jgi|Araly1|946994|scaffold_703223.1
Length=262

 Score =  137 bits (74),  Expect = 1e-31
 Identities = 96/107 (90%), Gaps = 0/107 (0%)
 Strand=Plus/Plus

Query  378  AGGTCAAGCAAGCGGATGAACTTGAAAACATACTAACCAAAAAATTTCTCAGATTCTTGT  437
            ||||||| ||||||||||||||||||||||||||||||||||| || || ||||| ||||
Sbjct  52   AGGTCAAACAAGCGGATGAACTTGAAAACATACTAACCAAAAAGTTCCTTAGATTTTTGT  111

Query  438  CCATGAGGGCAGAAGCTTTTCAAGTACTGAGGAGGAAGCCAGTGCAG  484
            | | |||  |||||||||||||||||| ||||||||| |||||||||
Sbjct  112  CAACGAGCCCAGAAGCTTTTCAAGTACCGAGGAGGAAACCAGTGCAG  158



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34882469055


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5