BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14170.1 Length=1819 Score E Sequences producing significant alignments: (Bits) Value Ahg946989 jgi|Araly1|946989|scaffold_703218.1 2091 0.0 Ahg330097 jgi|Araly1|330097|fgenesh1_pm.C_scaffold_7002324 145 1e-33 > Ahg946989 jgi|Araly1|946989|scaffold_703218.1 Length=1417 Score = 2091 bits (1132), Expect = 0.0 Identities = 1322/1416 (93%), Gaps = 4/1416 (0%) Strand=Plus/Plus Query 41 CGAAGAGTCTATTCGCAATGTTCTTGAAAGCTCGAGCTTTATCAGTAACTACACAGAATC 100 |||||| ||| || || ||||||||||||||||||||||| || ||||| |||||||||| Sbjct 4 CGAAGAATCTCTTGGCTATGTTCTTGAAAGCTCGAGCTTTCTCGGTAACCACACAGAATC 63 Query 101 CTCCTGATCTCTTCTCGCTTCTACATCATTCTCCAAACGCTAAACATCTACGCCATCTCC 160 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 64 CTCCTGATCTCTTCTCTCTTCTACATCATTCTCCAAACGCTAAGCATCTACGCCATCTCC 123 Query 161 ACGCTCACCTTCTTCGTACATTTCTCTATTCCAACGTTGTGCTCAGCTCCAAGCTCGTCC 220 | ||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||| | Sbjct 124 ATGCTCATCTTCTTCGTACCTCTCTCTACTCCAACGTTGTGCTCAGCTCCAAGCTCGTTC 183 Query 221 TCGCTTATTCCAAGCTGAACCATCTCTTTCCTACTTCGCTTTCTGTCTTCTGGCACATGC 280 ||||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 184 TCGCTTACTCCAAGATGAATCATCTCTTTCCCACTTCGCTTTCTGTCTTCTGGCACATGC 243 Query 281 CTTATCGCAACATTTTCTCTTGGAATATAATCATCGGTGAGTTCTCTAGATCGGGTTTTG 340 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 244 CTTGTCGCAACATTTTCTCTTGGAATATAATCATCGGTGAGTTCTCTAGATCGGGGTTTG 303 Query 341 CTTCCAAGTCAATTG-ATTTGTTTCTTCGTATGTGGCGAGAGTCTTGTGTTAGACCGGAT 399 | || | || || | | | |||||||||||||||||||||||| |||||||||||| Sbjct 304 CGTCGATTTCGATAGGAAT-GTTTCTTCGTATGTGGCGAGAGTCCAACGTTAGACCGGAT 362 Query 400 GATTTTACGCTTCCTCTTATTCTACGAGCTTGCTCTGCGTCTAGGGAAGCGAAATCTGGA 459 |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||| Sbjct 363 GATTTTACGCTTCCTCTTGTTCTACGAGCTTGCTCTGCTTCTCGGGAAGCGAAATTTGGA 422 Query 460 GATTTGATTCATGTTCTGTGTTTGAAACTTGGGTTTAGCTCAAGTTTGTTTGTTAGTTCG 519 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 423 GATTTGATTCATGTTCTGTGTTTGAAACTTGGGTTTAACGCAAGTTTGTTTGTTAGTTCG 482 Query 520 GCTTTAGTGATAATGTATGTAGATATGGG-GAAACTTTTACATGCACGTAAGTTGTTCGA 578 ||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||| Sbjct 483 GCTTTAGTGATTATGTATGTAGATTTGGGCGAAA-TTTTACATGCACGTAAGTTGTTCGA 541 Query 579 CGATATGCCTGTGAGAGACTCTGTTCTTTATACAGCTATGTTTGGTGGGTATGTTCAGCA 638 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 542 TGATATGCCTGTGAGAGACTCTGTTCTTTATACAGCTATGTTTGGTGGTTATGTTCAGCA 601 Query 639 AGGAGAAGCTATGTTGGGTTTAGCCATGTTCAGAGAAATGGGGTATTCTGGATTTGCGCT 698 ||| |||||| |||||||||| ||| |||| ||||||||| ||||||||||||| ||| Sbjct 602 AGGTGAAGCTCTGTTGGGTTTGGCCGTGTTTAGAGAAATGATGTATTCTGGATTTTTGCT 661 Query 699 GGATTCAGTGGTGATGGTGAGTTTACTTATGGCTTGTGGACAACTTGGAGCGTTGAAGCA 758 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 GGATTCAGTGGTAATGGTGAGTTTACTTATGGCTTGTGGACAACTTGGAGCGTTGAAGCA 721 Query 759 CGGGAAGAGCGTCCATGGATGGTGTATCAGGAGATGCTCCTGCTTGGGCTTGAATCTCGG 818 ||||||||| |||||||||||||||||| |||||||||| ||||| || |||||||| || Sbjct 722 CGGGAAGAGTGTCCATGGATGGTGTATCCGGAGATGCTCTTGCTTCGGATTGAATCTTGG 781 Query 819 CAATGCTATAACAGATATGTATGTAAAGTGCTCGATACTGGACTATGCGCACACTGTATT 878 ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 782 AAATGCGATAACAGATATGTATGTAAAGTGCTCCATACTGGACTATGCGCACACAGTATT 841 Query 879 TGTAAATATGTCGAGACGAGATGTGATCTCTTGGAGCTCGCTTATTTTGGGGTATGGTTT 938 |||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||| || Sbjct 842 TGTAAATATGCCGAGGCGAGATGTGATCTCTTGGAGCTCTCTTATTTTGGGTTATGGCTT 901 Query 939 GGATGGAGACGTGGTAATGTCTTTTAAACTCTTTGATGAGATGCTTAAGGAAGGAATTGA 998 |||||| ||||||||| ||||| | ||||||||||||||||||||| ||||||||||||| Sbjct 902 GGATGGTGACGTGGTAGTGTCTATAAAACTCTTTGATGAGATGCTTCAGGAAGGAATTGA 961 Query 999 ACCCAATGCTGTCACTTTTCTTGGTGTCTTATCAGCCTGTGCCCATGGCGGTCTTGTGGA 1058 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 962 ACCCAATGCTGTCACTTTTCTTGGTGTCTTATCAGCTTGTGCACATGGCGGTCTTGTGGA 1021 Query 1059 AAAATCTTGGCTGTATTTCAGACTAATGCAGGAATATAATATAGTTCCTGAACTGAAACA 1118 ||| |||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| Sbjct 1022 AAAGTCTTGGCTGTATCTCAGACTAATGCAGGAATATAAAATAGTTCCTGAACTAAAACA 1081 Query 1119 CTATGCTAGTGTGGCGGATTGTATGTCTCGAGCAGGTCTTCTGGAGGAAGCAGAGAAGTT 1178 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1082 CTATGCTAGTGTGGCGGATTGTATGTCTCGGGCAGGTCTTCTGGAGGAAGCAGAGAAGTT 1141 Query 1179 TCTGGAAGATATGCCCGTGAAACCTGATGAGGCTGTTATGGGTGCGGTGTTGAGTGGGTG 1238 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 1142 TCTGGAAGATATGCCCGTGGAACCTGATGAGGCTGTTTTGGGTGCGGTGTTGAGTGGGTG 1201 Query 1239 CAAGGTGTATGGAAATGTAGAAGTTGGGGAAAGAGTGGCGAGGGAGCTGATTCAACTTAA 1298 |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| | Sbjct 1202 CAAGGTGTATGGGAATGTAGAAGTAGGGGAAAGAGTGGCGAGGAAGCTGATTCAACTTGA 1261 Query 1299 GCCGAGAAAAGCTAGCTACTATGTAACGTTGGCCGGTCTATATTCAGCTGCAGGTCGGTT 1358 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1262 GCCGAGAAAAGGTAGCTACTATGTAACGTTGGCCGGTCTATATTCAGCTGCAGGTCGGTT 1321 Query 1359 TGATGAAGCTGAGAGTCTGAGGCAGTGGATGAAGGAGAAACAGATTTCTAAGGTTCCCGG 1418 ||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 1322 TGACGAAGCTGAGAGTCTGAGGCAGTTGATGAAGGAGAAGCAGATTTCTAAGGTTCCCGG 1381 Query 1419 GTGTAGCTCAATATGAAAGATGGGATGGAGATTTCA 1454 ||||||||||||||||||||||||||| |||||||| Sbjct 1382 GTGTAGCTCAATATGAAAGATGGGATGCAGATTTCA 1417 > Ahg330097 jgi|Araly1|330097|fgenesh1_pm.C_scaffold_7002324 Length=4020 Score = 145 bits (78), Expect = 1e-33 Identities = 101/112 (90%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 1636 TTT-CACCTCGCTGTTAGTGGAAAGCAAGGGACTTTTGATTGCCTCAGCAAATAAGACAT 1694 ||| |||||| |||| |||||||||||| || | ||| |||||||||||||||||||||| Sbjct 952 TTTGCACCTCACTGTCAGTGGAAAGCAACGGCCCTTTAATTGCCTCAGCAAATAAGACAT 893 Query 1695 TTAAACATGGCCTGGAGACTACAGTCTCAGCTGTCTGCAGAGGGTCATCATC 1746 ||||||| ||||||| ||||| ||||||||||||||||| |||||||||||| Sbjct 892 TTAAACAAGGCCTGGCGACTAGAGTCTCAGCTGTCTGCATAGGGTCATCATC 841 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68295809285 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5