BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14170.1
Length=1819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946989 jgi|Araly1|946989|scaffold_703218.1 2091 0.0
Ahg330097 jgi|Araly1|330097|fgenesh1_pm.C_scaffold_7002324 145 1e-33
> Ahg946989 jgi|Araly1|946989|scaffold_703218.1
Length=1417
Score = 2091 bits (1132), Expect = 0.0
Identities = 1322/1416 (93%), Gaps = 4/1416 (0%)
Strand=Plus/Plus
Query 41 CGAAGAGTCTATTCGCAATGTTCTTGAAAGCTCGAGCTTTATCAGTAACTACACAGAATC 100
|||||| ||| || || ||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 4 CGAAGAATCTCTTGGCTATGTTCTTGAAAGCTCGAGCTTTCTCGGTAACCACACAGAATC 63
Query 101 CTCCTGATCTCTTCTCGCTTCTACATCATTCTCCAAACGCTAAACATCTACGCCATCTCC 160
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 64 CTCCTGATCTCTTCTCTCTTCTACATCATTCTCCAAACGCTAAGCATCTACGCCATCTCC 123
Query 161 ACGCTCACCTTCTTCGTACATTTCTCTATTCCAACGTTGTGCTCAGCTCCAAGCTCGTCC 220
| ||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||| |
Sbjct 124 ATGCTCATCTTCTTCGTACCTCTCTCTACTCCAACGTTGTGCTCAGCTCCAAGCTCGTTC 183
Query 221 TCGCTTATTCCAAGCTGAACCATCTCTTTCCTACTTCGCTTTCTGTCTTCTGGCACATGC 280
||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 184 TCGCTTACTCCAAGATGAATCATCTCTTTCCCACTTCGCTTTCTGTCTTCTGGCACATGC 243
Query 281 CTTATCGCAACATTTTCTCTTGGAATATAATCATCGGTGAGTTCTCTAGATCGGGTTTTG 340
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 244 CTTGTCGCAACATTTTCTCTTGGAATATAATCATCGGTGAGTTCTCTAGATCGGGGTTTG 303
Query 341 CTTCCAAGTCAATTG-ATTTGTTTCTTCGTATGTGGCGAGAGTCTTGTGTTAGACCGGAT 399
| || | || || | | | |||||||||||||||||||||||| ||||||||||||
Sbjct 304 CGTCGATTTCGATAGGAAT-GTTTCTTCGTATGTGGCGAGAGTCCAACGTTAGACCGGAT 362
Query 400 GATTTTACGCTTCCTCTTATTCTACGAGCTTGCTCTGCGTCTAGGGAAGCGAAATCTGGA 459
|||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||
Sbjct 363 GATTTTACGCTTCCTCTTGTTCTACGAGCTTGCTCTGCTTCTCGGGAAGCGAAATTTGGA 422
Query 460 GATTTGATTCATGTTCTGTGTTTGAAACTTGGGTTTAGCTCAAGTTTGTTTGTTAGTTCG 519
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 423 GATTTGATTCATGTTCTGTGTTTGAAACTTGGGTTTAACGCAAGTTTGTTTGTTAGTTCG 482
Query 520 GCTTTAGTGATAATGTATGTAGATATGGG-GAAACTTTTACATGCACGTAAGTTGTTCGA 578
||||||||||| |||||||||||| |||| |||| |||||||||||||||||||||||||
Sbjct 483 GCTTTAGTGATTATGTATGTAGATTTGGGCGAAA-TTTTACATGCACGTAAGTTGTTCGA 541
Query 579 CGATATGCCTGTGAGAGACTCTGTTCTTTATACAGCTATGTTTGGTGGGTATGTTCAGCA 638
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 542 TGATATGCCTGTGAGAGACTCTGTTCTTTATACAGCTATGTTTGGTGGTTATGTTCAGCA 601
Query 639 AGGAGAAGCTATGTTGGGTTTAGCCATGTTCAGAGAAATGGGGTATTCTGGATTTGCGCT 698
||| |||||| |||||||||| ||| |||| ||||||||| ||||||||||||| |||
Sbjct 602 AGGTGAAGCTCTGTTGGGTTTGGCCGTGTTTAGAGAAATGATGTATTCTGGATTTTTGCT 661
Query 699 GGATTCAGTGGTGATGGTGAGTTTACTTATGGCTTGTGGACAACTTGGAGCGTTGAAGCA 758
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GGATTCAGTGGTAATGGTGAGTTTACTTATGGCTTGTGGACAACTTGGAGCGTTGAAGCA 721
Query 759 CGGGAAGAGCGTCCATGGATGGTGTATCAGGAGATGCTCCTGCTTGGGCTTGAATCTCGG 818
||||||||| |||||||||||||||||| |||||||||| ||||| || |||||||| ||
Sbjct 722 CGGGAAGAGTGTCCATGGATGGTGTATCCGGAGATGCTCTTGCTTCGGATTGAATCTTGG 781
Query 819 CAATGCTATAACAGATATGTATGTAAAGTGCTCGATACTGGACTATGCGCACACTGTATT 878
||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 782 AAATGCGATAACAGATATGTATGTAAAGTGCTCCATACTGGACTATGCGCACACAGTATT 841
Query 879 TGTAAATATGTCGAGACGAGATGTGATCTCTTGGAGCTCGCTTATTTTGGGGTATGGTTT 938
|||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 842 TGTAAATATGCCGAGGCGAGATGTGATCTCTTGGAGCTCTCTTATTTTGGGTTATGGCTT 901
Query 939 GGATGGAGACGTGGTAATGTCTTTTAAACTCTTTGATGAGATGCTTAAGGAAGGAATTGA 998
|||||| ||||||||| ||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 902 GGATGGTGACGTGGTAGTGTCTATAAAACTCTTTGATGAGATGCTTCAGGAAGGAATTGA 961
Query 999 ACCCAATGCTGTCACTTTTCTTGGTGTCTTATCAGCCTGTGCCCATGGCGGTCTTGTGGA 1058
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 962 ACCCAATGCTGTCACTTTTCTTGGTGTCTTATCAGCTTGTGCACATGGCGGTCTTGTGGA 1021
Query 1059 AAAATCTTGGCTGTATTTCAGACTAATGCAGGAATATAATATAGTTCCTGAACTGAAACA 1118
||| |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1022 AAAGTCTTGGCTGTATCTCAGACTAATGCAGGAATATAAAATAGTTCCTGAACTAAAACA 1081
Query 1119 CTATGCTAGTGTGGCGGATTGTATGTCTCGAGCAGGTCTTCTGGAGGAAGCAGAGAAGTT 1178
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1082 CTATGCTAGTGTGGCGGATTGTATGTCTCGGGCAGGTCTTCTGGAGGAAGCAGAGAAGTT 1141
Query 1179 TCTGGAAGATATGCCCGTGAAACCTGATGAGGCTGTTATGGGTGCGGTGTTGAGTGGGTG 1238
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1142 TCTGGAAGATATGCCCGTGGAACCTGATGAGGCTGTTTTGGGTGCGGTGTTGAGTGGGTG 1201
Query 1239 CAAGGTGTATGGAAATGTAGAAGTTGGGGAAAGAGTGGCGAGGGAGCTGATTCAACTTAA 1298
|||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |
Sbjct 1202 CAAGGTGTATGGGAATGTAGAAGTAGGGGAAAGAGTGGCGAGGAAGCTGATTCAACTTGA 1261
Query 1299 GCCGAGAAAAGCTAGCTACTATGTAACGTTGGCCGGTCTATATTCAGCTGCAGGTCGGTT 1358
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 GCCGAGAAAAGGTAGCTACTATGTAACGTTGGCCGGTCTATATTCAGCTGCAGGTCGGTT 1321
Query 1359 TGATGAAGCTGAGAGTCTGAGGCAGTGGATGAAGGAGAAACAGATTTCTAAGGTTCCCGG 1418
||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1322 TGACGAAGCTGAGAGTCTGAGGCAGTTGATGAAGGAGAAGCAGATTTCTAAGGTTCCCGG 1381
Query 1419 GTGTAGCTCAATATGAAAGATGGGATGGAGATTTCA 1454
||||||||||||||||||||||||||| ||||||||
Sbjct 1382 GTGTAGCTCAATATGAAAGATGGGATGCAGATTTCA 1417
> Ahg330097 jgi|Araly1|330097|fgenesh1_pm.C_scaffold_7002324
Length=4020
Score = 145 bits (78), Expect = 1e-33
Identities = 101/112 (90%), Gaps = 1/112 (1%)
Strand=Plus/Minus
Query 1636 TTT-CACCTCGCTGTTAGTGGAAAGCAAGGGACTTTTGATTGCCTCAGCAAATAAGACAT 1694
||| |||||| |||| |||||||||||| || | ||| ||||||||||||||||||||||
Sbjct 952 TTTGCACCTCACTGTCAGTGGAAAGCAACGGCCCTTTAATTGCCTCAGCAAATAAGACAT 893
Query 1695 TTAAACATGGCCTGGAGACTACAGTCTCAGCTGTCTGCAGAGGGTCATCATC 1746
||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 892 TTAAACAAGGCCTGGCGACTAGAGTCTCAGCTGTCTGCATAGGGTCATCATC 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68295809285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5