BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14200.1
Length=2625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946985 jgi|Araly1|946985|scaffold_703214.1 2671 0.0
> Ahg946985 jgi|Araly1|946985|scaffold_703214.1
Length=2404
Score = 2671 bits (1446), Expect = 0.0
Identities = 1750/1894 (92%), Gaps = 31/1894 (2%)
Strand=Plus/Plus
Query 620 AGTTGAATCAGCTTCAGA-GAATCGACAAGGTGCACAGCATTCTACTGAAGGACACTCTA 678
||||||| ||||||| || | |||||||||||||| || ||||||||||||||||||||
Sbjct 521 AGTTGAAGCAGCTTCCGATG-ATCGACAAGGTGCAGAGTTTTCTACTGAAGGACACTCTA 579
Query 679 TGTCATCTGAAACTGTGATTGAG---TCATCACAGGAAGCTCAGGTCATTGACGGTGGTG 735
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 580 TGGCATCTGAAACTGTGATTGAGTCATCATCACAGGAAGCTCAGGTCATTGACGGTGGTG 639
Query 736 ATACCATATCAAATGATAGATTAGAGACAGAATGCAAAGGGAAGTTAACGAAAGAATCTC 795
||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 640 ATACCATATCAAATGATAGATTAGATACAGAATGCAAAGGCAAGTTAACGGAAGAATCTG 699
Query 796 AATCTAAGTTAGCATCTGCATTAGGAAAGAGAGAGGATACTTCAGATTCATCGTGGAACG 855
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 700 AATCAAAGTTAGCATCTGCATTAGGAAAGAGAGAGGATACTTCAGATTCATCGTGGAATG 759
Query 856 ATGAAGTGATTTACTCAGATGTGGAGGGTCCCTATGGTTTTTCATCAGAAGCAACTAGTA 915
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 760 ATGAAGTGATTTACTCGGACGTGGAGGGTCCCTATGGATTTTCATCAGAAGCAACGAGTA 819
Query 916 TGACTCATCCTGATGAAGCTAGCTGTATAG-TCAGTGAGGATGTTCCAGTCCATACTTCT 974
|||||||||||| ||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 820 TGACTCATCCTGGTGAAGCTAGCTGTATAGGT-AGTGAGGATGTTCCAGTTCATACTTCT 878
Query 975 CCAGTAAAAGCTGATGCAACTCAGGTTATCAGTGCCAGTAAATCTGTTCCTGATGATATG 1034
|| ||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct 879 CCGGTAAAAGCTGATGCACCTCAGGATATCAGTGCCAGTCAATCTGTTCCTGATGATATG 938
Query 1035 CCTTTTGTTGAGAATGCTGATGTCTATTTGCATGGAATCAAAGGCTTTGAAGAATTTGAA 1094
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 939 CCTTTTGTTGAGAATGCTGATGTCTCTTTGCATGGAATCAAAGGCCTTGAAGAATTTGAA 998
Query 1095 GTGAGTCATTCTGTGAATCCTTTTCTTCCTGAGACATCTAAGGGAGAAGAATGTGAAATA 1154
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 999 GCAAGTCATTCTGTGAATCCTTATCTTCCTGAGACATCTAAGGGAGAAGAATGTGAAA-A 1057
Query 1155 GATACACTTACTGAGGCAGAGAATTTAGGAATTAAGCCTGAAGGCTTAAGTATTGGCTCA 1214
| | |||||||| |||||||| ||||||||| | ||||||||||||||||| ||||||
Sbjct 1058 CA--CTCTTACTGACGCAGAGAACTTAGGAATTCATCCTGAAGGCTTAAGTATCGGCTCA 1115
Query 1215 GAGGTTTCTTCATCAGACAAGCTTCTCGCTGGAGACAAAACTGAACCTCAAGGCCAAACC 1274
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1116 GAGGTTCCTTCATCAGACAAGCTTCTCGTTGGAGACAAAACTGAACCTCAAGGCCAAACT 1175
Query 1275 GATTTGGTTGCGGTCAAGGAATTTCCCAGTGCAGAGAACATACTGATATCTAAGATTAAC 1334
|||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct 1176 GATTTGGTTGCGATCAAGGAATTTCCCAGTGCAGAGAACATAATGATATCTATGATTGAC 1235
Query 1335 TCTGAAGATATCGGAATGAAAGCTGAAGAGGGTAAATCATCATTAGGGAATGCACAAACT 1394
||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1236 TCTGAAGATATTGAAATGAAAGCTGAAGAGGGTGAATCATCATTAGGGAATGCACACACT 1295
Query 1395 GTTGAATCAGAAACCTTGAGAGTTTCTCTACCTGCTGTAGATTCTGTAGTTGTTGACTCA 1454
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1296 GTTGAATCAGAAACATTGAGAGTTTCTCTACCTGCTGTAGATTCTATAGTTGTTGACTCG 1355
Query 1455 AATGCTGATATGAGCAGTGCAGCGAACAAAACTGGTTTAGTTGATCTCGCTGGTAATGAA 1514
||||||||| |||||| |||||| ||||||||||||||||||||||| | |||| ||||
Sbjct 1356 AATGCTGATGTGAGCAATGCAGCTAACAAAACTGGTTTAGTTGATCTTGTTGGTCATGAG 1415
Query 1515 AGTGAACTTATGCAAGCAAATGTTGTAGCTGAGAAGGGGAACAAACCAAAAGACACTTTG 1574
||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||| ||
Sbjct 1416 AGTGAACTTATTCAAGCAAATGTTGTAGCTGAGGAGGGGATCAACCCAAAAGACACGCTG 1475
Query 1575 AGTTCTGAATCCTCTTGTTATGCTTCTCCTGTGTCTGTTGTATTTGAGGGATCTGATGCA 1634
|||||||||||||||||||||| |||||| || |||||||||||||||||| |||||||
Sbjct 1476 AGTTCTGAATCCTCTTGTTATGTTTCTCCGGTATCTGTTGTATTTGAGGGAGATGATGCA 1535
Query 1635 AGTGATCAGATCAAAAGTTCAACAGAAACATCCAAAGACTCCGCCCTCCAAATCAG--C- 1691
|||||| |||| |||||||| |||||||||| |||||||| |||||||||||| | |
Sbjct 1536 AGTGATAAGATAAAAAGTTCTTCAGAAACATCTAAAGACTCTGCCCTCCAAATCGGTGCT 1595
Query 1692 G----CTG--AAAGTAAAGATGAAGTTTGCAGAGAGAGTAACAACGGAAGGCTTGTGGAG 1745
| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1596 GAATTCTGTGAAAGTAAAGATGAAGTTTGCAGAGAGATTAACAACGGAAGGCTTGTGGAG 1655
Query 1746 GAAAGCAGTTTCATAAACGAACCAAATAAAACGGAATATCCTATAAGCCATTTTGGATCA 1805
||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||
Sbjct 1656 GAAAGCAGTTTCATAAACGAAACAAATAGAACGGAATATCCTATAGGCCATTCTGGATCC 1715
Query 1806 ACAGGCACTGCACCTGACACTGTTAATACAGCTAATCAGACGTCACTGGAAATCGGAAGG 1865
|||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||
Sbjct 1716 ACAGGCACTGCACCGGACACTGTTAACACAGCTAATCAGAAGTCACTGGAAAGCGGAAGG 1775
Query 1866 ACAGAATTCAATAGAGTTGTTGGTGGCTTGGGGGTAATTCAAGCAAATGAGGTCGACGGT 1925
||||||||||||||||| ||||||||||||||||||||||||||||||||| | || |||
Sbjct 1776 ACAGAATTCAATAGAGTAGTTGGTGGCTTGGGGGTAATTCAAGCAAATGAGATTGATGGT 1835
Query 1926 AATGTCAAAGCACACAACAATTATGCTGAGGTCCCAGTGACAATAGAATCAAACGATCAT 1985
|||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1836 AATGTCAAAGCACAAAACTATTATGCTGAGGTCCCAGTGACAATAGAATCGAACGACCAT 1895
Query 1986 CGAGATTTTGGGAGATTGCAGAATCTTTCAGAAGCTCACATTAGATCTCTGGTTTCTAGT 2045
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1896 CGGGATTTTGGAAGATTGCAGAATCTTTCAGAAGCTCACATTAGATCTCTGGTTTCAAGT 1955
Query 2046 CCGCTAGTCACTAGAAATAATACATCTAATGC-TTCTGAATCTAACTTGGGACCAGTTTC 2104
|||||||||||||||||||||||||||||||| || |||||| ||||||||| | |||||
Sbjct 1956 CCGCTAGTCACTAGAAATAATACATCTAATGCGTT-TGAATCCAACTTGGGATCGGTTTC 2014
Query 2105 AGGTCTAAGCGCTGGAGTTAACAAAC-AGGAAGACGCATCTCAGAACCAAGAGATCACCT 2163
||| |||||| |||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 2015 AGGAGTAAGCGGTGGAGTTAACAAACCAGAAA-ACGCATCTCAGAACCAAGAGATCACCT 2073
Query 2164 TGGAGAAGACAACAAGCTGGGGCACAGCAAAGGAGCAACACGTCCCTCTAAAGAACCTTC 2223
|||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||
Sbjct 2074 TGGAGAAGACAACAAGCTGGAGCACAGCAAAGGAGCAACACGTCCCGCTTAAGAACCTTC 2133
Query 2224 TGAGTGAAGCAAGATCACCAAGGCTACAACAACAA---GCAAAGGATCACGAGAGTAACA 2280
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2134 TGAGTGAAGCAAGATCACCAAGGCTACAACAACAACAAGCAAAGGATCATGAGAGTAACA 2193
Query 2281 ACATACCGAGAGTGAGTTCGATACTGGGACAGGAGACATCCCCTGAAGATGGTCACTGGC 2340
|| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 2194 ACGTACCGAGAGTGAGTTCGATACTGGGACAGGAGACATCCCCTGAAGACGGTCGCTGGC 2253
Query 2341 CAGAGAAAAGAGAAGTGAGCGAGGAATGGAATTCACCAGCAAAGTATCCAGTGGACTT-A 2399
||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
Sbjct 2254 CAGAGAAAAGAGAAGTGAGTGAAGAATGGAATTCGCCAGCAAAGTATCCAGTGGACTTTA 2313
Query 2400 AAGAGAGAGGAGAAGAAAGTGAAAGGAAGACCCTTTTGGGTGCCATTTGTTTGCTGCTCC 2459
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2314 AA-AGAGAGGAGAAGAAAGTGAAAGGAAGACCCTTTTGGGTTCCATTTGTTTGCTGCTCC 2372
Query 2460 AATGTTAAATAGACCACCACTCTATTGTATAATG 2493
||||| ||||| | |||||||||||||||||||
Sbjct 2373 AATGTCAAATA-A--ACCACTCTATTGTATAATG 2403
Score = 337 bits (182), Expect = 3e-91
Identities = 224/244 (92%), Gaps = 3/244 (1%)
Strand=Plus/Plus
Query 377 TCCAACAGTTGTCGAAAAAGCTGCTAATGAGAGAATTGGGGATGTTTCTGAAGAGGATGT 436
||||| |||||| |||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 251 TCCAATAGTTGTGGAAAAAGCTG---ATGAGAGAGTTGGGGATGTTTCTGAAGAGGATGT 307
Query 437 GTTTACTGATGCTGTTTGTGAGTTTTCGAGATCTGATTCTTTCAAGGAAGAGACAGCTAC 496
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 308 GTTTACTGATGCTGTTTGTGAATTTTCGAGATCTGATTCTTTCAAGGAAGAGACAGCTAC 367
Query 497 AAACTTCCCGGCAAAGGGTACTGAGAATCCCGGTGAAACTCAGCAGTGCAACAATTCATC 556
||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 368 AAACTTCGCGGCTAAGGGTACTGAGAATCCCGGTGAAACTCAGCAGTGCAACAACTCATC 427
Query 557 TACGGCCTGTGAGATGAAAAGTTCTGAAGTGGTTCAAGACAGCTGTGAAGTTCCACCTGT 616
|| || |||| ||||||||| || ||||||||||||| || |||||||||||||| ||
Sbjct 428 AACAGCATGTGTGATGAAAAGCCCTAAAGTGGTTCAAGAGAGTTGTGAAGTTCCACCCGT 487
Query 617 GGAA 620
||||
Sbjct 488 GGAA 491
Score = 298 bits (161), Expect = 1e-79
Identities = 238/272 (88%), Gaps = 17/272 (6%)
Strand=Plus/Plus
Query 109 ACACACACATGGATTCTCAGGACCACTGCAGCAACTCTCCAGGAGGAGGTAAGA---ACC 165
||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 14 ACA-ACACATGGATTCTCAGGACCACT---GCAACTCTCCAGGAGGAGGTAAGAGTTGTC 69
Query 166 ATGTCTGTACTAAATGTGGTTGGAGTTATTCAAATCCACATCCTAGTGCTAAAAACCGTC 225
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 70 ATGTTTGTACTAAATGTGGTTGGAGTTATCCAAATCCACATCCTAGTGCTAAAAACCGCC 129
Query 226 GTGCTCACAAGAAAATCTGTGGAACCATCAAAGGATTTGAGATCTTTGACTCTGA-AATG 284
|||| |||||||||||||||||||||||||||||||||||||||||||| || || || |
Sbjct 130 GTGCACACAAGAAAATCTGTGGAACCATCAAAGGATTTGAGATCTTTGATTCCGATAA-G 188
Query 285 AAGAAAGAGAATCTTGATTTGCCGGAAGAACACT-CTTTGGATGATGAGCAAAAACCACC 343
| |||| ||||||||||||||| ||||||| ||| ||| || ||||||||||||||| ||
Sbjct 189 ACGAAACAGAATCTTGATTTGCAGGAAGAAAACTGCTT-GGTTGATGAGCAAAAACC-CC 246
Query 344 AACCCCAAGTCCAACAGTTGTCGAAAAATCTG 375
| | |||||| |||||| |||||| |||
Sbjct 247 --C---AGGTCCAATAGTTGTGGAAAAAGCTG 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98996546755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5