BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14200.1 Length=2625 Score E Sequences producing significant alignments: (Bits) Value Ahg946985 jgi|Araly1|946985|scaffold_703214.1 2671 0.0 > Ahg946985 jgi|Araly1|946985|scaffold_703214.1 Length=2404 Score = 2671 bits (1446), Expect = 0.0 Identities = 1750/1894 (92%), Gaps = 31/1894 (2%) Strand=Plus/Plus Query 620 AGTTGAATCAGCTTCAGA-GAATCGACAAGGTGCACAGCATTCTACTGAAGGACACTCTA 678 ||||||| ||||||| || | |||||||||||||| || |||||||||||||||||||| Sbjct 521 AGTTGAAGCAGCTTCCGATG-ATCGACAAGGTGCAGAGTTTTCTACTGAAGGACACTCTA 579 Query 679 TGTCATCTGAAACTGTGATTGAG---TCATCACAGGAAGCTCAGGTCATTGACGGTGGTG 735 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 580 TGGCATCTGAAACTGTGATTGAGTCATCATCACAGGAAGCTCAGGTCATTGACGGTGGTG 639 Query 736 ATACCATATCAAATGATAGATTAGAGACAGAATGCAAAGGGAAGTTAACGAAAGAATCTC 795 ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| Sbjct 640 ATACCATATCAAATGATAGATTAGATACAGAATGCAAAGGCAAGTTAACGGAAGAATCTG 699 Query 796 AATCTAAGTTAGCATCTGCATTAGGAAAGAGAGAGGATACTTCAGATTCATCGTGGAACG 855 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 700 AATCAAAGTTAGCATCTGCATTAGGAAAGAGAGAGGATACTTCAGATTCATCGTGGAATG 759 Query 856 ATGAAGTGATTTACTCAGATGTGGAGGGTCCCTATGGTTTTTCATCAGAAGCAACTAGTA 915 |||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||| Sbjct 760 ATGAAGTGATTTACTCGGACGTGGAGGGTCCCTATGGATTTTCATCAGAAGCAACGAGTA 819 Query 916 TGACTCATCCTGATGAAGCTAGCTGTATAG-TCAGTGAGGATGTTCCAGTCCATACTTCT 974 |||||||||||| ||||||||||||||||| | ||||||||||||||||| ||||||||| Sbjct 820 TGACTCATCCTGGTGAAGCTAGCTGTATAGGT-AGTGAGGATGTTCCAGTTCATACTTCT 878 Query 975 CCAGTAAAAGCTGATGCAACTCAGGTTATCAGTGCCAGTAAATCTGTTCCTGATGATATG 1034 || ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| Sbjct 879 CCGGTAAAAGCTGATGCACCTCAGGATATCAGTGCCAGTCAATCTGTTCCTGATGATATG 938 Query 1035 CCTTTTGTTGAGAATGCTGATGTCTATTTGCATGGAATCAAAGGCTTTGAAGAATTTGAA 1094 ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 939 CCTTTTGTTGAGAATGCTGATGTCTCTTTGCATGGAATCAAAGGCCTTGAAGAATTTGAA 998 Query 1095 GTGAGTCATTCTGTGAATCCTTTTCTTCCTGAGACATCTAAGGGAGAAGAATGTGAAATA 1154 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 999 GCAAGTCATTCTGTGAATCCTTATCTTCCTGAGACATCTAAGGGAGAAGAATGTGAAA-A 1057 Query 1155 GATACACTTACTGAGGCAGAGAATTTAGGAATTAAGCCTGAAGGCTTAAGTATTGGCTCA 1214 | | |||||||| |||||||| ||||||||| | ||||||||||||||||| |||||| Sbjct 1058 CA--CTCTTACTGACGCAGAGAACTTAGGAATTCATCCTGAAGGCTTAAGTATCGGCTCA 1115 Query 1215 GAGGTTTCTTCATCAGACAAGCTTCTCGCTGGAGACAAAACTGAACCTCAAGGCCAAACC 1274 |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1116 GAGGTTCCTTCATCAGACAAGCTTCTCGTTGGAGACAAAACTGAACCTCAAGGCCAAACT 1175 Query 1275 GATTTGGTTGCGGTCAAGGAATTTCCCAGTGCAGAGAACATACTGATATCTAAGATTAAC 1334 |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| || Sbjct 1176 GATTTGGTTGCGATCAAGGAATTTCCCAGTGCAGAGAACATAATGATATCTATGATTGAC 1235 Query 1335 TCTGAAGATATCGGAATGAAAGCTGAAGAGGGTAAATCATCATTAGGGAATGCACAAACT 1394 ||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 1236 TCTGAAGATATTGAAATGAAAGCTGAAGAGGGTGAATCATCATTAGGGAATGCACACACT 1295 Query 1395 GTTGAATCAGAAACCTTGAGAGTTTCTCTACCTGCTGTAGATTCTGTAGTTGTTGACTCA 1454 |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1296 GTTGAATCAGAAACATTGAGAGTTTCTCTACCTGCTGTAGATTCTATAGTTGTTGACTCG 1355 Query 1455 AATGCTGATATGAGCAGTGCAGCGAACAAAACTGGTTTAGTTGATCTCGCTGGTAATGAA 1514 ||||||||| |||||| |||||| ||||||||||||||||||||||| | |||| |||| Sbjct 1356 AATGCTGATGTGAGCAATGCAGCTAACAAAACTGGTTTAGTTGATCTTGTTGGTCATGAG 1415 Query 1515 AGTGAACTTATGCAAGCAAATGTTGTAGCTGAGAAGGGGAACAAACCAAAAGACACTTTG 1574 ||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||| || Sbjct 1416 AGTGAACTTATTCAAGCAAATGTTGTAGCTGAGGAGGGGATCAACCCAAAAGACACGCTG 1475 Query 1575 AGTTCTGAATCCTCTTGTTATGCTTCTCCTGTGTCTGTTGTATTTGAGGGATCTGATGCA 1634 |||||||||||||||||||||| |||||| || |||||||||||||||||| ||||||| Sbjct 1476 AGTTCTGAATCCTCTTGTTATGTTTCTCCGGTATCTGTTGTATTTGAGGGAGATGATGCA 1535 Query 1635 AGTGATCAGATCAAAAGTTCAACAGAAACATCCAAAGACTCCGCCCTCCAAATCAG--C- 1691 |||||| |||| |||||||| |||||||||| |||||||| |||||||||||| | | Sbjct 1536 AGTGATAAGATAAAAAGTTCTTCAGAAACATCTAAAGACTCTGCCCTCCAAATCGGTGCT 1595 Query 1692 G----CTG--AAAGTAAAGATGAAGTTTGCAGAGAGAGTAACAACGGAAGGCTTGTGGAG 1745 | ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1596 GAATTCTGTGAAAGTAAAGATGAAGTTTGCAGAGAGATTAACAACGGAAGGCTTGTGGAG 1655 Query 1746 GAAAGCAGTTTCATAAACGAACCAAATAAAACGGAATATCCTATAAGCCATTTTGGATCA 1805 ||||||||||||||||||||| |||||| |||||||||||||||| |||||| |||||| Sbjct 1656 GAAAGCAGTTTCATAAACGAAACAAATAGAACGGAATATCCTATAGGCCATTCTGGATCC 1715 Query 1806 ACAGGCACTGCACCTGACACTGTTAATACAGCTAATCAGACGTCACTGGAAATCGGAAGG 1865 |||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||| Sbjct 1716 ACAGGCACTGCACCGGACACTGTTAACACAGCTAATCAGAAGTCACTGGAAAGCGGAAGG 1775 Query 1866 ACAGAATTCAATAGAGTTGTTGGTGGCTTGGGGGTAATTCAAGCAAATGAGGTCGACGGT 1925 ||||||||||||||||| ||||||||||||||||||||||||||||||||| | || ||| Sbjct 1776 ACAGAATTCAATAGAGTAGTTGGTGGCTTGGGGGTAATTCAAGCAAATGAGATTGATGGT 1835 Query 1926 AATGTCAAAGCACACAACAATTATGCTGAGGTCCCAGTGACAATAGAATCAAACGATCAT 1985 |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1836 AATGTCAAAGCACAAAACTATTATGCTGAGGTCCCAGTGACAATAGAATCGAACGACCAT 1895 Query 1986 CGAGATTTTGGGAGATTGCAGAATCTTTCAGAAGCTCACATTAGATCTCTGGTTTCTAGT 2045 || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1896 CGGGATTTTGGAAGATTGCAGAATCTTTCAGAAGCTCACATTAGATCTCTGGTTTCAAGT 1955 Query 2046 CCGCTAGTCACTAGAAATAATACATCTAATGC-TTCTGAATCTAACTTGGGACCAGTTTC 2104 |||||||||||||||||||||||||||||||| || |||||| ||||||||| | ||||| Sbjct 1956 CCGCTAGTCACTAGAAATAATACATCTAATGCGTT-TGAATCCAACTTGGGATCGGTTTC 2014 Query 2105 AGGTCTAAGCGCTGGAGTTAACAAAC-AGGAAGACGCATCTCAGAACCAAGAGATCACCT 2163 ||| |||||| |||||||||||||| || || ||||||||||||||||||||||||||| Sbjct 2015 AGGAGTAAGCGGTGGAGTTAACAAACCAGAAA-ACGCATCTCAGAACCAAGAGATCACCT 2073 Query 2164 TGGAGAAGACAACAAGCTGGGGCACAGCAAAGGAGCAACACGTCCCTCTAAAGAACCTTC 2223 |||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| Sbjct 2074 TGGAGAAGACAACAAGCTGGAGCACAGCAAAGGAGCAACACGTCCCGCTTAAGAACCTTC 2133 Query 2224 TGAGTGAAGCAAGATCACCAAGGCTACAACAACAA---GCAAAGGATCACGAGAGTAACA 2280 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 2134 TGAGTGAAGCAAGATCACCAAGGCTACAACAACAACAAGCAAAGGATCATGAGAGTAACA 2193 Query 2281 ACATACCGAGAGTGAGTTCGATACTGGGACAGGAGACATCCCCTGAAGATGGTCACTGGC 2340 || |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 2194 ACGTACCGAGAGTGAGTTCGATACTGGGACAGGAGACATCCCCTGAAGACGGTCGCTGGC 2253 Query 2341 CAGAGAAAAGAGAAGTGAGCGAGGAATGGAATTCACCAGCAAAGTATCCAGTGGACTT-A 2399 ||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| | Sbjct 2254 CAGAGAAAAGAGAAGTGAGTGAAGAATGGAATTCGCCAGCAAAGTATCCAGTGGACTTTA 2313 Query 2400 AAGAGAGAGGAGAAGAAAGTGAAAGGAAGACCCTTTTGGGTGCCATTTGTTTGCTGCTCC 2459 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2314 AA-AGAGAGGAGAAGAAAGTGAAAGGAAGACCCTTTTGGGTTCCATTTGTTTGCTGCTCC 2372 Query 2460 AATGTTAAATAGACCACCACTCTATTGTATAATG 2493 ||||| ||||| | ||||||||||||||||||| Sbjct 2373 AATGTCAAATA-A--ACCACTCTATTGTATAATG 2403 Score = 337 bits (182), Expect = 3e-91 Identities = 224/244 (92%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 377 TCCAACAGTTGTCGAAAAAGCTGCTAATGAGAGAATTGGGGATGTTTCTGAAGAGGATGT 436 ||||| |||||| |||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 251 TCCAATAGTTGTGGAAAAAGCTG---ATGAGAGAGTTGGGGATGTTTCTGAAGAGGATGT 307 Query 437 GTTTACTGATGCTGTTTGTGAGTTTTCGAGATCTGATTCTTTCAAGGAAGAGACAGCTAC 496 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 308 GTTTACTGATGCTGTTTGTGAATTTTCGAGATCTGATTCTTTCAAGGAAGAGACAGCTAC 367 Query 497 AAACTTCCCGGCAAAGGGTACTGAGAATCCCGGTGAAACTCAGCAGTGCAACAATTCATC 556 ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 368 AAACTTCGCGGCTAAGGGTACTGAGAATCCCGGTGAAACTCAGCAGTGCAACAACTCATC 427 Query 557 TACGGCCTGTGAGATGAAAAGTTCTGAAGTGGTTCAAGACAGCTGTGAAGTTCCACCTGT 616 || || |||| ||||||||| || ||||||||||||| || |||||||||||||| || Sbjct 428 AACAGCATGTGTGATGAAAAGCCCTAAAGTGGTTCAAGAGAGTTGTGAAGTTCCACCCGT 487 Query 617 GGAA 620 |||| Sbjct 488 GGAA 491 Score = 298 bits (161), Expect = 1e-79 Identities = 238/272 (88%), Gaps = 17/272 (6%) Strand=Plus/Plus Query 109 ACACACACATGGATTCTCAGGACCACTGCAGCAACTCTCCAGGAGGAGGTAAGA---ACC 165 ||| ||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 14 ACA-ACACATGGATTCTCAGGACCACT---GCAACTCTCCAGGAGGAGGTAAGAGTTGTC 69 Query 166 ATGTCTGTACTAAATGTGGTTGGAGTTATTCAAATCCACATCCTAGTGCTAAAAACCGTC 225 |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 70 ATGTTTGTACTAAATGTGGTTGGAGTTATCCAAATCCACATCCTAGTGCTAAAAACCGCC 129 Query 226 GTGCTCACAAGAAAATCTGTGGAACCATCAAAGGATTTGAGATCTTTGACTCTGA-AATG 284 |||| |||||||||||||||||||||||||||||||||||||||||||| || || || | Sbjct 130 GTGCACACAAGAAAATCTGTGGAACCATCAAAGGATTTGAGATCTTTGATTCCGATAA-G 188 Query 285 AAGAAAGAGAATCTTGATTTGCCGGAAGAACACT-CTTTGGATGATGAGCAAAAACCACC 343 | |||| ||||||||||||||| ||||||| ||| ||| || ||||||||||||||| || Sbjct 189 ACGAAACAGAATCTTGATTTGCAGGAAGAAAACTGCTT-GGTTGATGAGCAAAAACC-CC 246 Query 344 AACCCCAAGTCCAACAGTTGTCGAAAAATCTG 375 | | |||||| |||||| |||||| ||| Sbjct 247 --C---AGGTCCAATAGTTGTGGAAAAAGCTG 273 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98996546755 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5