BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14220.1
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493488 jgi|Araly1|493488|fgenesh2_kg.7__2921__AT4G14220.1 2193 0.0
> Ahg493488 jgi|Araly1|493488|fgenesh2_kg.7__2921__AT4G14220.1
Length=1483
Score = 2193 bits (1187), Expect = 0.0
Identities = 1406/1506 (93%), Gaps = 37/1506 (2%)
Strand=Plus/Plus
Query 28 tcttcttcttcttcttcttcttcttcttcaacctcttaaatctcaaa--atctcaatcat 85
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 2 TCTTCTTCTTCTTCTTCCTCTTCTTCTTCAACCTCTTAAATCTCAAATTCTCTCAATCCT 61
Query 86 caagcttc-tc--cttcttcttcttc-t-ttccatcttcgcttcAACAACAATGTCTAAT 140
| |||||| || ||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 62 C-AGCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATCTTCGCTTCAACAACAATGTCTAAT 120
Query 141 TTCACTTATACATCTGCTTTCAACTTATCCGACAACTCCCCTTTTAATCCCGCCATTGGT 200
||||||||||| ||||| ||||||||||||| ||||||||||| || ||||||
Sbjct 121 TTCACTTATACTTCTGCCTTCAACTTATCCG---ACTCCCCTTTTGATTCCGCCA----- 172
Query 201 TCTTCGTCTTCTTCTTCCTCCGCGC-TCGTCGTAGCTTCCGATGATGATAATAATACCGA 259
|| | |||||||||||||||| | |||||||| |||||||||||| || | ||||
Sbjct 173 --TT-G-CTTCTTCTTCCTCCGC-CTTCGTCGTACCTTCCGATGATG---AT--T-CCGA 221
Query 260 TGATGCTTGTAGCATCTGTCTCGAGCCTTTCACCCTCCAGGATCCTTCCACTGTCACCAG 319
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 222 CGACGCTTGTAGCATCTGTCTCGAGCCTTTCACTCTCCAGGATCCTTCCACTGTCACCAG 281
Query 320 CTGCAAACATGAATATCACCTTCAGTGCATCATTGAATGGTCACAGAGAAGCAAAGAGTG 379
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TTGCAAACATGAATATCATCTTCAGTGCATCATTGAATGGTCACAGAGAAGCAAAGAGTG 341
Query 380 TCCTATTTGCTGGCAATTGTTTGTTTTGAGAGACCCTGCTAGCCAAGAGCTTTTAG-CTG 438
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 342 TCCTATTTGCTGGCAATTGTTTGTTTTGAGAGATCCTGCTAGCCAAGAGCTTTT-GTCTG 400
Query 439 CTGTGGAAAAGGAAAGACTTTTGAAAACCAGGAATATATCTTCATCCTCTCCAATCTCTA 498
|||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||
Sbjct 401 CTGTGGAAAAGGAAAGACTTTTGAAAACCAGGAACATTTCTTCATCATCTCCAATATCTA 460
Query 499 TTCATCACTCTCATGACGATTTTCACTCTGAGGAGGAGGAATCACAGTTTAGCAGCTTTG 558
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 461 TTCATCACTCTCAGGAGGATTTTCACTCTGAGGAGGAGGAATCGCAGTTTAGCAGCTTTG 520
Query 559 ATGAACAATTCTTGAGGCATCTTACTGAAGCTGCACATAGACGTTGTTTGCTTCGCAGAA 618
||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 521 ATGAACAGTTCTTGAGGCATCTCACTGAAGCTGCCCATAGACGTTGTTTGCTTCGTAGAA 580
Query 619 GGGATGGTCAAATATCCTCTAGTCTTGTTTCGTCCAGCGATCCCACTACGATTCATCCTA 678
||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||
Sbjct 581 GGGATGGTCAAATATCCTCAAGTCTTGTTTCGTCCAGTGATCCCACTATGATTCATCCTA 640
Query 679 CTGATTTGGTCAATCTTTATCGTCTCTCTGCTATTTCCCATGTTGAACATCAAAACTCAA 738
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 641 CTGATTTGGTCAATCTTTATCGTATCTCTGCTATTTCCCATGTTGAACATCAAAACGCAA 700
Query 739 ACCCTTGTCCAAGTCCTGGCTCAATGACTC-CATCTCCCGTCTCTGGTCATTCTTCCATT 797
|||||||||||||||||||||||||||| | ||||||| |||||||| || |||||| ||
Sbjct 701 ACCCTTGTCCAAGTCCTGGCTCAATGAC-CGCATCTCCTGTCTCTGGCCACTCTTCCGTT 759
Query 798 CCTGCAGATAGCAATAACGGATCCAGAATCTCTCCTGGCCCTTCTCCATCTCGTTCATCT 857
|||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct 760 CCTGCAGATAGCAACAACGCATCCAGAATCTCTCCTGGCCCGTCTCCGTCTCGTTCATCT 819
Query 858 CAAAGTCCAAAAT-CACCTGAAGCATCCTCGCTTCCGGAAGCCATTAAATCGAAACTAGC 916
|||||||| | || |||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 820 CAAAGTCC-AGATCCACCTGAAGCATCCTCTCTTCCTGAAGCCATTAAATCCAAACTAGC 878
Query 917 TGCTGCTTCTGCAAAGTACAAGGAATCGATCTCTAAAAGTAAACAAGGTCTTAAAGAGAA 976
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 879 TGCTGCTTCCGCAAAGTACAAAGAATCGATCTCTAAAAGTAAACAAGGTCTTAAAGAGAA 938
Query 977 GCTACTTGCTCGCAATAACTCAGTGAAAGAATTGAGCAAAGGAGTGCAACGTGAGATGAA 1036
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 939 GCTACTTGCTCGCAATAACTCAGTGAAAGAATTGAGCAAAGGAGTACAACGTGAAATGAA 998
Query 1037 TGCAGGAATAGCTGGTGTTGCACGAATGATCGAACGCATGGATTTTTCTTCAAAACGTTT 1096
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 999 TGCAGGAATAGCTGGTGTTGCACGCATGATCGAACGCTTGGATTTTTCTTCAAAACGTTT 1058
Query 1097 TGGAGGGTCTGCTCATGTATCAACCTCCACTGCTACTGCTTCTGGATTCAATTTCTCATT 1156
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 TGGAGGGTCTGGTCATGTATCAACCTCCACTGCTACTGCTTCTGGATTCAATTTCTCATT 1118
Query 1157 CAAAGGGAAACGTGTAGAAGCCAATTCTAAGTCTAACAACAATGGAGACAAAACCGAACC 1216
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1119 CAAAGGGAAGCGTGTAGAAGCCAATTCTAAGTCTAGCAACAATGGAGACAAAACCGAACC 1178
Query 1217 CCAAAAGCTGCAGGGAGGAGAAACGTGCTGAGGCAATCAGAAAAATGGAGAGAGGCCTTT 1276
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1179 CCAAAAGCTGCAGGGAGGAGAAACTTGCTGAGGCAATCAGATAAATGGAGAGAGGCCTTT 1238
Query 1277 AATGCAAGCGATGTACGTTTCCATTGAATCAACTTACCCGTTGGTCTTCGCATCCTGCAT 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 AATGCAAGCGATGTACGTTTCCATTGAATCAACTTACCCGTTGGTCTTCGCATCCTGCAT 1298
Query 1337 TGTTC-AGAGCTCACGGTCTCGTCTCTCGTCTCTCTGTTACCTTTGCGATGCGTACTTTT 1395
||||| |||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||
Sbjct 1299 TGTTCCAGAGCTCACGGTCTTGTCTCTCTTCTCTCTGTTACTTTTGCGATGAGTACTTTT 1358
Query 1396 AGATGGCTAAAATAAGCAACTGAGTAATAATTTTATTACTCGATTTT-GACGGAGCCAAA 1454
||| |||||||||||||||||||||||| ||||||||||||||||| | ||||| ||||
Sbjct 1359 AGAAGGCTAAAATAAGCAACTGAGTAATCTTTTTATTACTCGATTTTCG-CGGAGTCAAA 1417
Query 1455 ACTATAATATTTATTAATTTCAAAGGATAATGTTTTATGTTTTTTCACTAAGAATTGGAT 1514
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1418 ACTATAATATTTATTAATTTCAAAGGATAATGTTCTATGTTTTTTCACTAAGAATTGGAT 1477
Query 1515 CAGTCC 1520
|||||
Sbjct 1478 TAGTCC 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58773248035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5