BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G14225.1

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946981 jgi|Araly1|946981|scaffold_703210.1                        263    7e-70


> Ahg946981 jgi|Araly1|946981|scaffold_703210.1
Length=463

 Score =  263 bits (142),  Expect = 7e-70
 Identities = 166/178 (93%), Gaps = 0/178 (0%)
 Strand=Plus/Plus

Query  201  TGCGTGCAAGAAGAAGGTGGGGTTGCTAGGGTTTCACTGTAGATGTGGCCACTTATTCTT  260
            |||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| 
Sbjct  266  TGCGTGCAAGAAGAAGGTTGGGTTGCTAGGGTTTCACTGTAGATGTGGCCACATGTTCTG  325

Query  261  CGCGTCTCACCGTTACCCGGAAGAGCATTCATGTCCATCGGATTATAAATCTGCCGCCAT  320
            || ||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct  326  CGGGTCTCACCGCTACCCTGAAGAGCATTCTTGTCCATCGGATTATAAATCTGCAGCCAT  385

Query  321  TGACGTCTTAGCAAAACAAAACCCTGTCGTCAAGGGTGATAAGCTCTTCAGACTTTAG  378
            ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||
Sbjct  386  TGACGTCTTAGCAAAACAAAACCCTATCGTCAAGGCTGATAAACTCTTCAGACTTTAG  443


 Score =  213 bits (115),  Expect = 7e-55
 Identities = 144/158 (91%), Gaps = 2/158 (1%)
 Strand=Plus/Plus

Query  1    ATGACGGGAGAACCTTCTTTATGCATTAGGGGGTGTGGCTTCTTCAGCACGTCACAGACG  60
            ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| || 
Sbjct  21   ATGACAGGAGAACCATCTTTATGCATTAGAGGGTGTGGCTTCTTCAGCACGTCACAAACC  80

Query  61   AAGAACCTCTGTTCTAAGTGCTACAACGATTTCTTAAAGGACGAGTCTGCCAGATACTTG  120
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  81   AAGAACCTCTGTTCTAAGTGCTACAACGATTTCTTAAAGGACGAGTCAGCCAGATACTTG  140

Query  121  GCCACTTTCAACGTCAACACG-AAAGCCGCTGAAGAGG  157
            | |||||||||| ||||| || ||| | || | |||||
Sbjct  141  GACACTTTCAACATCAACCCGGAAA-CAGCGGCAGAGG  177



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13507078506


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5