BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G14226.1

Length=168
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg890936 jgi|Araly1|890936|Al_scaffold_0007_2922                    254    2e-67


> Ahg890936 jgi|Araly1|890936|Al_scaffold_0007_2922
Length=498

 Score =  254 bits (137),  Expect = 2e-67
 Identities = 158/168 (94%), Gaps = 1/168 (1%)
 Strand=Plus/Plus

Query  1    ATGAACTTCATTATGTGTAAGAATCCAGAAGCTGAGAACCCTGAAGTTTCTCTGGACACA  60
            |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
Sbjct  310  ATGAACTTCATTATGTGTAAGAATTCAGAAGCTGAGAACCTTGAAGTTTCTCTGGACAGA  369

Query  61   ACCCGGAAGATTAGTGGAAAGTGGAGGGCGTGGATGAACAACTCTTTGGCCTTAATGCTT  120
            ||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| 
Sbjct  370  ACCGGGAAGATTATTGGAAAGTGGAGGGCGTGGTTGAAAAACTCTTTGGCCTTAATGCTC  429

Query  121  CCATTACTCAAACAAATTTCCCATGGACAATCAGCAACAATCGACTAA  168
            ||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct  430  CCATTACTCAAACAAATTTCCCATGGACAATCAACAACA-TCGACTAA  476



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5537297845


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5