BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14230.1
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493487 jgi|Araly1|493487|fgenesh2_kg.7__2920__AT4G14230.1 2540 0.0
Ahg493485 jgi|Araly1|493485|fgenesh2_kg.7__2918__AT4G14240.1 1472 0.0
> Ahg493487 jgi|Araly1|493487|fgenesh2_kg.7__2920__AT4G14230.1
Length=1652
Score = 2540 bits (1375), Expect = 0.0
Identities = 1564/1655 (95%), Gaps = 14/1655 (1%)
Strand=Plus/Plus
Query 99 GACGACGAAGATGCATCCGATTAATGCGGTGGTTGCGGCGAGGATGTTAGCCGGAATCAG 158
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 GACGACGACGATGCATCCGATTAATGCGGTGGTTGCGGCGAGGATGTTGGCCGGAATCAG 60
Query 159 TCAATCTAACGCCTTACAAAGCGAGGCGATTCCGTTTGGATCGCTTGAGTGGATCACTTA 218
|||||||||||||||| ||||||| || || || |||||||||||||||||||||| |||
Sbjct 61 TCAATCTAACGCCTTAGAAAGCGAAGCAATCCCCTTTGGATCGCTTGAGTGGATCATTTA 120
Query 219 CGCCGGAATCTCTTGTTTCCTTGTTCTCTTCGCCGGAATTATGTCTGGTCTCACTTTAGG 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGCCGGAATCTCTTGTTTCCTTGTTCTCTTCGCCGGAATTATGTCTGGTCTCACTTTAGG 180
Query 279 GCTTATGTCTCTCGGTCTCGTTGAGCTCGAGATTCTCCAACGGAGTGGTACTCCAAAAGA 338
||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 181 GCTTATGTCTCTCGGTCTCGTCGAGCTCGAGATTCTTCAACATAGTGGTACTCCAAAAGA 240
Query 339 GAAGAAACAATCTGCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGAC 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGAAACAATCTGCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGAC 300
Query 399 TCTGCTTCTGTTTAATGCTCTTGCTATGGAGGGGCTTCCTATATACTTGGATAAGATATT 458
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTGCTTCTGTTTAATGCACTTGCTATGGAGGGGCTTCCTATATACTTGGATAAGATATT 360
Query 459 CAATGAGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTTGGAGAGGTTAT 518
||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||
Sbjct 361 CAATGAGTATGTTGCTATTATTCTATCGGTCACTTTCGTGCTATTTGTCGGAGAGGTTAT 420
Query 519 TCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTAATTTGGTCTGGCTTGT 578
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTAATTTGGTTTGGCTTGT 480
Query 579 TCGTATCTTAATGGTTCTATCGTACCCGATATCTTTTCCTATTGCAAAGATGTTGGATTG 638
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCGTATCTTGATGGTTCTGTCTTACCCGATATCTTTTCCTATTGCAAAGATGTTGGATTG 540
Query 639 GGTGTTGGGACACAATGACCCTTTATTTAGGCGAGCTCAGTTAAAAGCTCTTGTGTCCAT 698
||| |||||||||||||||||||| ||||| || |||||||| |||||||||||||||||
Sbjct 541 GGTATTGGGACACAATGACCCTTTGTTTAGACGGGCTCAGTTGAAAGCTCTTGTGTCCAT 600
Query 699 TCACGGTGAAGCTGCTGGAAAGGGAGGTGAACTTACACATGATGAGACTACAATTATAAG 758
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 601 TCATGGTGAAGCTGCTGGAAAGGGAGGTGAACTTACACATGATGAGACCACAATCATAAG 660
Query 759 TGGAGCACTTGATTTGACTGAAAAGACCGCTCAAGAAGCCATGACACCAATTGAATCAAC 818
|||||||||||||||||| || ||||| ||||||||||||||||| || |||||||||||
Sbjct 661 TGGAGCACTTGATTTGACGGAGAAGACTGCTCAAGAAGCCATGACTCCTATTGAATCAAC 720
Query 819 GTTTTCCTTGGATGTAAATTCAAAGTTGGACCGGGAAGCTATGGATAAGATTCAAGCACG 878
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 721 CTTTTCCTTGGATGTAAATTCAAAGTTGGATAGGGAAGCTATGGATAAGATTCAAGCACG 780
Query 879 AGGTCATAGCCGCGTTCCTGTCTACTCCGATAATCCAAAAAATGTTATTGGACTTCTCTT 938
|||||| |||||| ||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 781 AGGTCACAGCCGCATTCCTGTCTACTCTGAGAATCCAAAGAATGTTATTGGACTTCTCTT 840
Query 939 GGTGAAGAGTCTCCTTACAGTTCGCCCTGAAACAGGGACTCTTGTCAGCGCAGTTGGTAT 998
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 841 GGTGAAGAGTCTACTTACAGTTCGCCCTGAAACAGGGACCCTTGTCAGTGCAGTTGGTAT 900
Query 999 ACGCCGAATTCCAAGGGTTCCGGCTAATATGCCTCTGTATGATATTCTGAATGAGTTTCA 1058
||||||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||
Sbjct 901 ACGCCGAATTCCAAGGGTTCCAGCTGATATGCCTCTGTATGATATACTAAATGAGTTTCA 960
Query 1059 AAAAGGGAGCAGTCACATGGCTGCAGTTGTGAAGGTTAAGGGGAAAAGCAAAGGTCATCC 1118
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 961 AAAAGGGAGCAGTCACATGGCAGCAGTTGTGAAGGTTAACGGGAAAAGCAAAGGTCATCC 1020
Query 1119 TTCAACTTTGCATGAAGAAAATAGCGGTGAAAGCAACGTCTCAAGTAACAACTCCGAGTT 1178
|| |||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1021 TTTAACTTTGCTTGAAGAAAATAGCAGTGAAAGCAACGTCTCAAGTAATAACTCCGAGTT 1080
Query 1179 GACTGCACCTCTTTTACTAAAGCGAGAAGGAAACCACGACAGTGTCATTGTCCGCATCGA 1238
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GACTGCACCTCTGTTACTAAAGCGAGAAGGAAACCACGACAGTGTCATTGTCCGCATCGA 1140
Query 1239 CAAGGCTAATGGACAATCGTTCATCAGCGAGGCCGGCAGACAGGGGTTCTCACATACTTC 1298
||||||||||||||||||||||| |||||||||||||||||| || ||||| ||||||||
Sbjct 1141 CAAGGCTAATGGACAATCGTTCACCAGCGAGGCCGGCAGACACGGATTCTCGCATACTTC 1200
Query 1299 AGAGGAGATTGAGGATGGAGACGTAATTGGTATCATCACATTAGAAGATGTGTTTGAAGA 1358
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1201 AGAGGAGATTGAAGATGGAGACGTAATTGGTATCATCACATTGGAAGATGTGTTTGAAGA 1260
Query 1359 ACTTTTGCAGGAGGAGATTGTGGATGAAACAGATGAGTATATAGACGTGCATAAAAGGAT 1418
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1261 ACTTTTGCAGGAGGAGATTGTGGATGAAACAGATGAGTATATAGACGTTCATAAAAGGAT 1320
Query 1419 TCGTGTGGCAACTGTAGCAGCAGTGGCCATTTCATCATTAGCGAGAGCACCTTCAGGCCG 1478
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1321 TCGTGTGGCGACTGTAGCAGCAGTGGCCATTTCATCATTAGCGAGAGCACCTTCAGGTCG 1380
Query 1479 GAGGTTACTTGGCCCAAAAGG-A-----A-GTGGAGGACCAAAAACGCCAAAGGCATCTT 1531
|||||||||||||| |||||| | | ||||||||||||||||||||||| ||||||
Sbjct 1381 GAGGTTACTTGGCC-AAAAGGGATCTGTAAGTGGAGGACCAAAAACGCCAAAGACATCTT 1439
Query 1532 CTACTCCCAAACCGGATGATAAACTGATGGGAACCATGACCGGTCCTCCTCAAGGAAACA 1591
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1440 CTACTCCCAAACCGGACGATAAACTGATCGGAACCATGACCGGTCCTCCTCAAGGGAACA 1499
Query 1592 ACTGATTATTTAAGGTGGGTGTTGAGTTTTTGCTTGAGATGTGAAAAATAAATAAGGTTT 1651
|||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1500 ACTGATGATTTCAGGTGGGTGTTGAGTTTTTGCTTGAGATGTGAGAAATAAATAAGGTTT 1559
Query 1652 TGAAACTTAGATCAGTTTAGAGCACCTTCTCTCTTTCACTGCTTAACTACATATGTATAA 1711
|||||||||||||| ||||||||||||||||| || |||| |||||||||||||||||||
Sbjct 1560 TGAAACTTAGATCAATTTAGAGCACCTTCTCT-TT-CACTACTTAACTACATATGTATAA 1617
Query 1712 TACAT----GTCGATATAATCTACAATTCTTTCAA 1742
||||| || |||||||||||| ||||||||||
Sbjct 1618 TACATACATGTAGATATAATCTACTATTCTTTCAA 1652
> Ahg493485 jgi|Araly1|493485|fgenesh2_kg.7__2918__AT4G14240.1
Length=1960
Score = 1472 bits (797), Expect = 0.0
Identities = 1229/1432 (86%), Gaps = 52/1432 (4%)
Strand=Plus/Plus
Query 105 GAAGATGCATCCGATTAATGCGGTGGTTGCGGCGAGGATGTTAGCCGGAATCAGTCAATC 164
||||||||||| |||||||||||||| ||||||||||||||| |||||||| | ||||
Sbjct 130 GAAGATGCATCTGATTAATGCGGTGGCGGCGGCGAGGATGTTATCCGGAATCGGACAATT 189
Query 165 TAACGCCTTAC--A--AAGCGAGGCGATTCCGTTTGGATCGCTTGAGTGGATCACTTACG 220
||||| | || | | || |||||||||||||||||| ||||||||||||||||||
Sbjct 190 TAACG-GTAACGGAGGTGGTGAAGCGATTCCGTTTGGATCGTTTGAGTGGATCACTTACG 248
Query 221 CCGGAATCTCTTGTTTCCTTGTTCTCTTCGCCGGAATTATGTCTGGTCTCACTTTAGGG- 279
||||||||||||||||||| || ||||||||||| |||||||||||||| ||||| |||
Sbjct 249 CCGGAATCTCTTGTTTCCTCGTACTCTTCGCCGGGATTATGTCTGGTCTTACTTT-GGGA 307
Query 280 CTTATGTCTCTCGGTCTCGTTGAGCTCGAGATTCTCCAACGGAGTGGTACTCCAAAAGAG 339
||||||||||| ||||| || ||||| |||||||| ||||| ||||||||||| || |||
Sbjct 308 CTTATGTCTCTTGGTCTTGTCGAGCTTGAGATTCTTCAACGTAGTGGTACTCCTAACGAG 367
Query 340 AAGAAACAATCTGCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACT 399
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AAGAAACAAGCCGCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACA 427
Query 400 CTGCTTCTGTTTAATGCTCTTGCTATGGAGGGGCTTCCTATATACTTGGATAAGATATTC 459
|||||||||| ||||||| | ||||||||||||||||||||||||||||||||| | |||
Sbjct 428 CTGCTTCTGTGTAATGCTATGGCTATGGAGGGGCTTCCTATATACTTGGATAAGTTGTTC 487
Query 460 AATGAGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTCGTT-GGAGAGGTTAT 518
||||| || ||||| |||||||| || ||||| |||||||| | | || || ||||||||
Sbjct 488 AATGAATACGTTGCGATTATTCTTTCGGTCACATTCGTTCT-TGCTTTCGGTGAGGTTAT 546
Query 519 TCCTCAAGCTATATGTACTAGATATGGACTAGCAGTGGGAGCTAATTTGGTCTGGCTTGT 578
||||||||| ||||| ||||| |||||||| || || ||||| ||||| |||||||||||
Sbjct 547 TCCTCAAGCGATATGCACTAGGTATGGACTTGCGGTTGGAGCGAATTTCGTCTGGCTTGT 606
Query 579 TCGTATCTTAATGGTTCTAT-CGTACCCGATAT-CTTTTCCTATTG-CAAAGATGTTGGA 635
|| || |||||| ||| | | ||||| || | | ||||| |||| ||| ||| || ||
Sbjct 607 CCGCATTTTAATGACTCTCTGC-TACCCTAT-TGCCTTTCCCATTGGCAA-GATCTTAGA 663
Query 636 TTGGGTGTTGGGACACAATGACCCTTTATTTAGGCGAGCTCAGTTAAAAGCTCTTGTGTC 695
|| |||| |||||||||||||| ||||||||||||| |||||||| ||||||||||| ||
Sbjct 664 TTTGGTGCTGGGACACAATGACGCTTTATTTAGGCGGGCTCAGTTGAAAGCTCTTGTATC 723
Query 696 CATTCACGGTGAAGCTGCTGGAAAGGGAGGTGAACTTACACATGATGAGACTACAATTAT 755
||||||| | ||| ||||| ||||||||||| ||||||||||||||||| || || ||
Sbjct 724 CATTCACAGCCAAGAGGCTGGTAAGGGAGGTGAGCTTACACATGATGAGACGACCATCAT 783
Query 756 AAGTGGAGCACTTGATTTGACTGAAAAGACCGCTCAAGAAGCCATGACACCAATTGAATC 815
|||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 784 TAGTGGAGCTCTTGATTTGACTGAGAAGACTGCACAAGAAGCCATGACACCAATTGAATC 843
Query 816 AACGTTTTCCTTGGATGTAAATTCAAAGTTGGACCGGGAAGCTATGGATAAGATTCAAGC 875
|| || ||||||||||| |||||||| ||||| |||||||||||| ||||||| |||
Sbjct 844 TACCTTCTCCTTGGATGTTAATTCAAAATTGGATTGGGAAGCTATGGGTAAGATTTTAGC 903
Query 876 ACGAGGTCATAGCCGCGTTCCTGTCTACTCCGATAATCCAAAAAATGTTATTGGACTTCT 935
|||||| ||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 904 ACGAGGCCATAGCCGCGTTCCTGTCTACTCCGGGAATCCAAAAAACGTTATTGGCCTTCT 963
Query 936 CTTGGTGAAGAGTCTCCTTACAGTTCGCCCTGAAACAGGGACTCTTGTCAGCGCAGTTGG 995
||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||||||| |
Sbjct 964 CTTGGTGAAGAGTCTACTTACTGTTCGCCCTGAAACAGAGACCCTTGTCAGCGCAGTTTG 1023
Query 996 TATACGCCGAATTCCAAGGGTTCCGGCTAATATGCCTCTGTATGATATTCTGAATGAGTT 1055
||||||||| |||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 1024 TATACGCCGGATTCCAAGGGTTCCAGCTGATATGCCTCTGTATGATATACTGAATGAGTT 1083
Query 1056 TCAAAAAGGGA-GCAGTCACATGGCTGCAGTTGTGAAGGTTAAGGGGAAAAGCAAAGGTC 1114
|||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1084 TCAAAA-GGGAAGTAGTCACATGGCTGCAGTTGTGAAGGTTAAGGGGAAAAGCAAAGTTC 1142
Query 1115 ATCCTTCAACTTTGCATGAAGAAAATAGCG-GTGAAAGCAACGTCTCAAGTAACAACTCC 1173
|||| ||||||||| ||||||||| | | | |||||||| | | | | |||
Sbjct 1143 CTCCTACAACTTTGCCTGAAGAAAACA-CTTGCGAAAGCAA--T-----G-A-C---TCC 1189
Query 1174 GAGTTGACTGCACCTCTTTTACTAAAGCGAGAAGGAAACCACGACAGTGTCATTGTCCGC 1233
|| |||||||||||||| |||||||| ||||| ||||||||||||| |||||||||| |
Sbjct 1190 GACTTGACTGCACCTCTGTTACTAAAACGAGATGGAAACCACGACAATGTCATTGTCA-C 1248
Query 1234 A-TCGACAAGGCTAATGGACAATCGTTC-ATCAG--C---GAG-GCCGG-CAGACAGGGG 1284
| |||||||||||||||||||||||||| |||| | ||| | || | ||| |||
Sbjct 1249 AATCGACAAGGCTAATGGACAATCGTTCTATCAAAACAACGAGAGT-GGACC-ACACGGG 1306
Query 1285 TTCTCACATACTTCAGAGGAGATTGAGGATGGAGACGTAATTGGTATCATCACATTAGAA 1344
||||||||||||||||||| || |||||||| || ||||| ||||||||||| ||||||
Sbjct 1307 TTCTCACATACTTCAGAGGCTATCGAGGATGGCGAAGTAATCGGTATCATCACTTTAGAA 1366
Query 1345 GATGTGTTTGAAGAACTTTTGCAGGAGGAGATTGTGGATGAAACAGATGAGTATATAGAC 1404
||||||||||||||||||||||| || ||||||||||||||||||||||| ||| | |||
Sbjct 1367 GATGTGTTTGAAGAACTTTTGCAAGAAGAGATTGTGGATGAAACAGATGAATATGTTGAC 1426
Query 1405 GTGCATAAAAGGATTCGTGTGGCAACTGTAGCAGCAGTGGCCATTTCATCATTAGCGAGA 1464
|| |||||||||||||| || ||| | | |||||| || || | ||||| ||||||||
Sbjct 1427 GTACATAAAAGGATTCGAGTAGCAGCAGCAGCAGC--TG-CC-T--CATCAATAGCGAGA 1480
Query 1465 GCACCTTCAGGCCGGAGGTTACTTGGCCCAAAAGG-AAGTGGAGGACCAAAA 1515
|| |||||| |||||| || |||| | ||||||| || |||||||| ||||
Sbjct 1481 GCTCCTTCAAGCCGGAAATTGCTTG-CACAAAAGGGAACTGGAGGAC-AAAA 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66772199485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5