BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14250.1
Length=2703
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890933 jgi|Araly1|890933|Al_scaffold_0007_2919 1247 0.0
Ahg907546 jgi|Araly1|907546|Al_scaffold_0002_627 514 1e-144
Ahg906639 jgi|Araly1|906639|Al_scaffold_0003_3767 86.1 1e-15
Ahg356646 jgi|Araly1|356646|fgenesh1_pg.C_scaffold_8000433 86.1 1e-15
> Ahg890933 jgi|Araly1|890933|Al_scaffold_0007_2919
Length=2085
Score = 1247 bits (675), Expect = 0.0
Identities = 999/1144 (87%), Gaps = 67/1144 (6%)
Strand=Plus/Plus
Query 1 ATGGAGACTGCAACGAG-GACTCACCAACAGAGAAAACTGATCTCATCTTTCCTCGATAT 59
||||||| ||||||||| | || |||||| | |||||||||||||||||||||| ||
Sbjct 1 ATGGAGAGTGCAACGAGTG-CTAACCAAC---TACAACTGATCTCATCTTTCCTCGACAT 56
Query 60 CACCGTTAACCAAACTGTGGAAATCGCAAC-ACAGTTCCTTGAGGCAACAACCTGGAACC 118
||||||| ||||| ||| |||||||| | ||||||||| ||||||||| |||| |||
Sbjct 57 CACCGTTGGCCAAAGTGTAGAAATCGC-TCTTCAGTTCCTTAAGGCAACAAACTGGCACC 115
Query 119 TTGAAGATGCGATCAACCTCTTTCTCATCGCTCGGAGAAACCCTCATCATCACCATGGAG 178
|||||||||| ||||||||||||||||||||| ||||||||||| | || ||
Sbjct 116 TTGAAGATGCCATCAACCTCTTTCTCATCGCTAGGAGAAACCCT-A--AT--CC------ 164
Query 179 AAGAACTAGTCCCTCTTCCTTTACCTTCGAAGAAGAATACTCTCTACGACTACGATCCTT 238
||||| ||||||||||||||||||||||| || | |||||||||||| || | |||
Sbjct 165 -AGAACAAGTCCCTCTTCCTTTACCTTCGATGATGGATACTCTCTACG---AC--T-CTT 217
Query 239 TCATGTC-TCACAACACTTCGGTCGCAGTATGTCCTGAAGAGATCTGGGACGACGAGTCG 297
|||| | |||||||||||||||||| |||| ||||||||| |||| || ||| |||
Sbjct 218 CCATG-CGTCACAACACTTCGGTCGCCGTATCTCCTGAAGATATCT-GG--GAC---TCG 270
Query 298 ACATCT---GAG---GAATCCGATTCTAGGTTGTCTTCTTTGTACCGTCCTCCTCCAAGT 351
|||||| ||| |||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 271 ACATCTGAGGAGTCCGAATCCTATTCAAGGTTGTCTTCCTTGTACCGTCCTCCTCCAAGT 330
Query 352 CTGTTTTTCCACGGTTCGTTTGAAGATGCGAAAGCAACGTCCTCTAGAGAGGATCTATGG 411
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 331 CTGTTTTTCCATGGTTCGTTTGAAGATGCGAAAGCAACTTCCTCTAGAGAGGATCTATGG 390
Query 412 TTGCTTGT-TA--ACC-T-CCA-CGAAGGTCAGAAAATATCTACTTTCTACAAGATCGAC 465
|||||||| || | | | ||| |||||||||||| ||||||||||| ||||||||||||
Sbjct 391 TTGCTTGTCTATGATCATACCAACGAAGGTCAGAAGATATCTACTTTTTACAAGATCGAC 450
Query 466 TCTGTTCCTCCTGTGGTGCTTCTCATCGATCCCATCACTGGCCAGAAGATGCGTATGTGG 525
| || |||||||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 451 TTTGCTCCTCCTGTGGTTCTCCTCATCGATCCCGTCACTGGCCAGAAGATGCGTATGTGG 510
Query 526 AGCGGTGTGATTGAACCTCAGGGCTTTCTCGAGGATTTGATGAAGTACATGGATTCTGGT 585
|||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |||||
Sbjct 511 AGCGGTATGATTGAACCTCAGGGTTTTCTTGAGGATTTGATGAAGTACATGGATGCTGGT 570
Query 586 CCTCACGAACACGTTGCATCTCTGACAAGCAACAAACGTATGAAAACAGAGAAGATCTCC 645
||||||||||| ||||| ||||| | | ||||||||||||| |||||||||||||| |||
Sbjct 571 CCTCACGAACATGTTGCTTCTCT-A-A-GCAACAAACGTATCAAAACAGAGAAGATTTCC 627
Query 646 TGTTC-AAGTAACAACGCTGATGATCAAG-A--CATGGCTACTTTCTGGGGAAACGCTAT 701
| ||| ||| ||||||||||||||||||| | |||||| ||||||||||| | | |||
Sbjct 628 T-TTCCAAGCAACAACGCTGATGATCAAGTAGACATGGCGACTTTCTGGGGTGATGATAT 686
Query 702 TGAAGAAGAAAAGACTGTAATCAAATCTGGAAAGGAGGAGACTTTTACGTCTGATCGCGT 761
||||||||||||||||||| |||| || ||||||||||| | ||| || |
Sbjct 687 TGAAGAAGAAAAGACTGTAGCCAAAGATGAAAAGGAGGAGA-----A--TCT---CG--T 734
Query 762 TGTGGCTCCTTCTTGGGGGCCAGAATTTGAAGACATAATGACTTTATCCGAACATGAGGA 821
|||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||
Sbjct 735 TGTGGCTCCTTCTTGGGGGCAAGAATTTGAAGACATAAAGACTTTATCCGACCATGAGGA 794
Query 822 GGAAACTTGTTTGTCATGCGACCTGCTTGAGTTTCCGGTTTTGACAGAAGAGCCTAAAGC 881
|||||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||||
Sbjct 795 GGAAACTTGTTTGTCAAGCGACCTGTTTGAGTTCCCGGTTTTGACAGAAGAGCCAAAAGA 854
Query 882 AGACTGTGATAGAAGCGTTGTGTGCAGTATT-TGTGTTCGATTTCCAGATGGGAGAAGAA 940
|||||||||||||||| ||||||||||| || || ||||||||||||||||| |||||||
Sbjct 855 AGACTGTGATAGAAGCATTGTGTGCAGT-TTGTGCGTTCGATTTCCAGATGGAAGAAGAA 913
Query 941 AGCAGAGGAAGTTTCTCAAGAGCGAACCGATTCAGCTTCTCTGGTCTTTCTGTTATTCTC 1000
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 914 AGCAGAGGAAGTTTCTCAAGAGCGAACCAATACAACTTCTCTGGTCTTTCTGTTATTCTC 973
Query 1001 ACATGGAGGAATCCGAGAAAAAGGAGTTCAAGCTTGTGCAGGCGATTCCTGGTGCTTCCA 1060
||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 974 ACATGGAGGAATCCGAGAAGAAGGCGTTCAGGCTTGTGCAGGCGATTCCTGGTGCTTCCA 1033
Query 1061 AGACTCTGGATTATGGAGCTAAGGCCACGTTTGATCAATCTGGGATCGCTAATTCGATGA 1120
|||||||||||||||||||||| | |||||||||||| |||||| | |||||||||||||
Sbjct 1034 AGACTCTGGATTATGGAGCTAATGTCACGTTTGATCACTCTGGGCTTGCTAATTCGATGA 1093
Query 1121 TTTC 1124
||||
Sbjct 1094 TTTC 1097
Score = 1155 bits (625), Expect = 0.0
Identities = 806/891 (90%), Gaps = 21/891 (2%)
Strand=Plus/Plus
Query 1588 GTGAATCTCCAGTCCAGGACAGAGTTAGGTTCTCATATACTTAATCGAGATGTATGGGCG 1647
|||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||
Sbjct 1204 GTGAATCTCCAGTCCAGGACGGAGTTAGCTTCTCATACACTTAATAGAGATGTATGGGCG 1263
Query 1648 AACGACGCGGTTTCGAGAACCATTGAGTCCCA-CTTCATCGTATGGCAGGTCTATGATGA 1706
|| |||||||||||| ||| |||||||| | | || ||||||||||||||||||||||||
Sbjct 1264 AAGGACGCGGTTTCGCGAAACATTGAGT-CTAGCTGCATCGTATGGCAGGTCTATGATGA 1322
Query 1707 TACAAACGAAGGTCAGAAAATCTCTAGTTTCTACAAGATCGAAGCTCCTCCTCCTGTGGT 1766
||||||||||||||||||| ||||||| ||||||||||||||| || |||||||||||||
Sbjct 1323 TACAAACGAAGGTCAGAAAGTCTCTAGCTTCTACAAGATCGAATCTGCTCCTCCTGTGGT 1382
Query 1767 GTTTGTAATCAATCCCATCACTGGCCAGAAGATGCATATGTGGAGCGGCGTGATTGAAGC 1826
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
Sbjct 1383 TTTTGTAATCAATCCCATCACTGGCCAGAAGATGCGTATGTGGAGTGGCGTGATTGAACC 1442
Query 1827 TGAGAGTATTGTCGAGGATTTGATGATGTTTTGGGACGCTGGTCCTCACGAAAACATTGC 1886
||| ||| ||||||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 1443 TGACAGTTTTGTCGAGGATTTGATGATGTTTAGGGACGCTGCTCGTCACGAAAACATTGC 1502
Query 1887 TTCTCTGACAAGGAACAGGCGCACGGAAACTGCGGAGACTTGTTTGTCAAGCTACAACTT 1946
||||||||||||||||||||||||||||||| | |||||||||| || |||| ||||| |
Sbjct 1503 TTCTCTGACAAGGAACAGGCGCACGGAAACTACAGAGACTTGTTCGTTAAGCAACAACAT 1562
Query 1947 CTAT---GAAACCCCTGCTCCTTCCTGGGGTGAAGAGTTTGAAGAGGAGGATAATTGGTC 2003
|||| ||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||
Sbjct 1563 CTATTATGAAACCCCTCCTCCTTCCTGGGGTGAAGAGTTTGAAAAGGAGGATACTTGTTC 1622
Query 2004 GTCAAGAAGCAACAATAATCAAGTCGTGGCTCCTACTTGGGAGAAAGAACTTGAAGAACA 2063
|||||||| ||| || |||||||||||||||||| | ||||| ||||| ||||||| ||
Sbjct 1623 GTCAAGAAACAATAACAATCAAGTCGTGGCTCCT--T-GGGAGCAAGAATTTGAAGACCA 1679
Query 2064 AGACGAGTGGG-AGATTTGGTCGTCACGCAGTGACACTGATGACTTCGTGCCTCCTTTTA 2122
|||| || ||| ||| ||||||||||||||| |||||||||||||| |||||||||| ||
Sbjct 1680 AGAC-AGGGGGGAGACTTGGTCGTCACGCAGCGACACTGATGACTTTGTGCCTCCTTCTA 1738
Query 2123 TGGGGGACGAATATGAAGA-TCCGGATGAAGTAAAGGAGGAGGAG-ATA-T-GTTTAGTG 2178
| | ||||||||||||||| || | |||||||||||||||||||| | | | ||||||||
Sbjct 1739 TAGCGGACGAATATGAAGACTCTG-ATGAAGTAAAGGAGGAGGAGGAGACTTGTTTAGTG 1797
Query 2179 TTCCCGGTTTTGACAGAAGAGCCAAAAGGAGACTGTGATCGAAGCGTTGTGTGTAGTCTC 2238
|||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1798 TTCCCGGTTTTGGCAGAAGAGCCAAATGGAGACTGTGATCGAAGTTTTGTGTGTAGTCTC 1857
Query 2239 TGCGTTCGATTTCCAGATGGGAGAAGAAAGCAGAGGA-AGTTTCTCAAGAGCGAACCGAT 2297
||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||
Sbjct 1858 TGCGTTCGATTTCCAGATGGGAGAAGAAAACAGAGGAGA-TTTCTCAAGAGCGAACGGAT 1916
Query 2298 TCAGCTTCTTTGGTCATTCTGTTATTCTCACATTGA-TGAATCTGAGAAAAAGG-CATTC 2355
||||||||||||||| ||||||||||| ||||| || |||||||||||||| || | |||
Sbjct 1917 TCAGCTTCTTTGGTCTTTCTGTTATTCCCACAT-GAATGAATCTGAGAAAA-GGTCGTTC 1974
Query 2356 AAGCTGGTGCAGGCGATTCCCGGTGCTTCAAAGACTCTAGATTGTGAAGCTGACGCCACG 2415
||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||
Sbjct 1975 AAGCTGGTGCAGGCGATTCCCGGTGCTTCCAAGACTCTAGATTATGAAGCTGACACCACG 2034
Query 2416 TTCGACCAATCTGGGCTTGCTAATTCGCTGATCTCGGTTACTTGGGAATGA 2466
|| |||||||| ||||| ||||||||| ||||||||||||||||||| |||
Sbjct 2035 TTTGACCAATCCGGGCTCGCTAATTCGATGATCTCGGTTACTTGGGAGTGA 2085
Score = 333 bits (180), Expect = 4e-90
Identities = 249/283 (88%), Gaps = 1/283 (0%)
Strand=Plus/Plus
Query 2170 TGTTTAGTGTTCCCGGTTTTGACAGAAGAGCCAAAAGGAGACTGTGATCGAAGCGTTGTG 2229
||||| | ||||||||||||||||||||||||||||| |||||||||| ||||| |||||
Sbjct 818 TGTTT-GAGTTCCCGGTTTTGACAGAAGAGCCAAAAGAAGACTGTGATAGAAGCATTGTG 876
Query 2230 TGTAGTCTCTGCGTTCGATTTCCAGATGGGAGAAGAAAGCAGAGGAAGTTTCTCAAGAGC 2289
|| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 877 TGCAGTTTGTGCGTTCGATTTCCAGATGGAAGAAGAAAGCAGAGGAAGTTTCTCAAGAGC 936
Query 2290 GAACCGATTCAGCTTCTTTGGTCATTCTGTTATTCTCACATTGATGAATCTGAGAAAAAG 2349
||||| || || ||||| ||||| ||||||||||||||||| || ||||| ||||| |||
Sbjct 937 GAACCAATACAACTTCTCTGGTCTTTCTGTTATTCTCACATGGAGGAATCCGAGAAGAAG 996
Query 2350 GCATTCAAGCTGGTGCAGGCGATTCCCGGTGCTTCAAAGACTCTAGATTGTGAAGCTGAC 2409
|| |||| ||| |||||||||||||| |||||||| |||||||| |||| || |||| |
Sbjct 997 GCGTTCAGGCTTGTGCAGGCGATTCCTGGTGCTTCCAAGACTCTGGATTATGGAGCTAAT 1056
Query 2410 GCCACGTTCGACCAATCTGGGCTTGCTAATTCGCTGATCTCGG 2452
| |||||| || || |||||||||||||||||| |||| ||||
Sbjct 1057 GTCACGTTTGATCACTCTGGGCTTGCTAATTCGATGATTTCGG 1099
Score = 189 bits (102), Expect = 9e-47
Identities = 163/193 (84%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 428 ACGAAGGTCAGAAAATATCTA-CTTTCTACAAGATCGACTCTGTTCCTCCTGTGGTGCTT 486
|||||||||||||| | |||| | |||||||||||||| |||| |||||||||||| ||
Sbjct 1328 ACGAAGGTCAGAAAGTCTCTAGC-TTCTACAAGATCGAATCTGCTCCTCCTGTGGTTTTT 1386
Query 487 CTCATCGATCCCATCACTGGCCAGAAGATGCGTATGTGGAGCGGTGTGATTGAACCTCAG 546
| ||| |||||||||||||||||||||||||||||||||| || |||||||||||| |
Sbjct 1387 GTAATCAATCCCATCACTGGCCAGAAGATGCGTATGTGGAGTGGCGTGATTGAACCTGAC 1446
Query 547 GGCTTTCTCGAGGATTTGATGAAGTACATGGATTCTGGTCCTCACGAACACGTTGCATCT 606
| ||| ||||||||||||||| || | ||| ||| || ||||||| || |||| |||
Sbjct 1447 AGTTTTGTCGAGGATTTGATGATGTTTAGGGACGCTGCTCGTCACGAAAACATTGCTTCT 1506
Query 607 CTGACAAGCAACA 619
|||||||| ||||
Sbjct 1507 CTGACAAGGAACA 1519
> Ahg907546 jgi|Araly1|907546|Al_scaffold_0002_627
Length=918
Score = 514 bits (278), Expect = 1e-144
Identities = 354/391 (91%), Gaps = 3/391 (1%)
Strand=Plus/Plus
Query 749 CGTCTGATCGCGTTGTGGCTCCTTCTTGGGGGCCAGAATTTGAAGA---CATAATGACTT 805
|||| |||||||| |||| | |||||| |||| |||||||||||| ||||||||||
Sbjct 524 CGTCAGATCGCGTCGTGGTTTCTTCTTCCGGGCAAGAATTTGAAGATGTAATAATGACTT 583
Query 806 TATCCGAACATGAGGAGGAAACTTGTTTGTCATGCGACCTGCTTGAGTTTCCGGTTTTGA 865
|||||||||||||||||||||||||||||||| || || || || |||| ||||||||||
Sbjct 584 TATCCGAACATGAGGAGGAAACTTGTTTGTCAAGCAACATGTTTAAGTTCCCGGTTTTGA 643
Query 866 CAGAAGAGCCTAAAGCAGACTGTGATAGAAGCGTTGTGTGCAGTATTTGTGTTCGATTTC 925
||||||||||||||| |||||||||| |||| ||||| |||||||| | |||| |||||
Sbjct 644 CAGAAGAGCCTAAAGGAGACTGTGATCGAAGTGTTGTCTGCAGTATCAGCGTTCAATTTC 703
Query 926 CAGATGGGAGAAGAAAGCAGAGGAAGTTTCTCAAGAGCGAACCGATTCAGCTTCTCTGGT 985
|| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 704 CAAATGGGAGAAGAAAGCAGAGAAAGTTTCTTAAGAGTGAACCGATTCAGCTTCTCTGGT 763
Query 986 CTTTCTGTTATTCTCACATGGAGGAATCCGAGAAAAAGGAGTTCAAGCTTGTGCAGGCGA 1045
|||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||| ||||
Sbjct 764 CTTTCTGTTATTCTCACATGGAGGAATCAGAGAAGAAGGCGTTCAAGCTAGTGCAAGCGA 823
Query 1046 TTCCTGGTGCTTCCAAGACTCTGGATTATGGAGCTAAGGCCACGTTTGATCAATCTGGGA 1105
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 824 TTCCTGGTGCTTCCAAGACTCTGCATTATGGAGCTAAGGCCACGTTTGATCAATCTGGGA 883
Query 1106 TCGCTAATTCGATGATTTCAGTTACTTGGGA 1136
||||||||||||| ||||| |||||||||||
Sbjct 884 TCGCTAATTCGATCATTTCGGTTACTTGGGA 914
> Ahg906639 jgi|Araly1|906639|Al_scaffold_0003_3767
Length=777
Score = 86.1 bits (46), Expect = 1e-15
Identities = 63/70 (90%), Gaps = 5/70 (7%)
Strand=Plus/Plus
Query 1237 AAGAGAAACAT-GTGGGCTAAGGTTCGTGGTGTGGCTATGATGAACCCAGTGGAGCATCC 1295
||||||||| | ||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 574 AAGAGAAAC-TCATGGCCTAAGGTTCGTGGTGTGGCTATGA--A-CCCAGTGGAGCATCC 629
Query 1296 TCATGGAGGA 1305
||||||||||
Sbjct 630 TCATGGAGGA 639
> Ahg356646 jgi|Araly1|356646|fgenesh1_pg.C_scaffold_8000433
Length=336
Score = 86.1 bits (46), Expect = 1e-15
Identities = 63/70 (90%), Gaps = 5/70 (7%)
Strand=Plus/Plus
Query 1237 AAGAGAAACAT-GTGGGCTAAGGTTCGTGGTGTGGCTATGATGAACCCAGTGGAGCATCC 1295
||||||||| | ||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 184 AAGAGAAAC-TCATGGCCTAAGGTTCGTGGTGTGGCTATGA--A-CCCAGTGGAGCATCC 239
Query 1296 TCATGGAGGA 1305
||||||||||
Sbjct 240 TCATGGAGGA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101967585865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5