BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G14260.1

Length=1140
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492225 jgi|Araly1|492225|fgenesh2_kg.7__1658__AT4G25920.1         366    2e-100
  Ahg946972 jgi|Araly1|946972|scaffold_703201.1                        196    2e-49 
  Ahg946973 jgi|Araly1|946973|scaffold_703202.1                        154    1e-36 


> Ahg492225 jgi|Araly1|492225|fgenesh2_kg.7__1658__AT4G25920.1
Length=1197

 Score =  366 bits (198),  Expect = 2e-100
 Identities = 379/462 (82%), Gaps = 29/462 (6%)
 Strand=Plus/Plus

Query  676   TTCATCGACTTGGATTATGAAAATCTTCCAGAGTCGGTGTTT-AAGCAGTTGGCGGGA-G  733
             ||| |||||||||||| |||  |||||||||| ||||||||| ||| ||||||| ||| |
Sbjct  718   TTCCTCGACTTGGATTTTGACGATCTTCCAGAATCGGTGTTTCAAG-AGTTGGC-GGACG  775

Query  734   TGAGTTCATGTTCCAAGACAGATCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTCG  793
             ||||| ||||||| | ||| || ||||| |||||||||||||||||||||||||||||||
Sbjct  776   TGAGTACATGTTCTAGGACGGACCACCTAGTGGAGTCACCCACCGGCCAACTTTTCCTCG  835

Query  794   TCAAGTGGT-TCGTGGAGGACGTGGAGGACCTTTGCGACAA-TACACCCATGCA-C--GT  848
             ||||||||| | | | ||||  | |||||| || |  |||| | ||| | || | |  ||
Sbjct  836   TCAAGTGGTATGGCG-AGGATTTCGAGGACATT-G--ACAACTGCACAC-TGTATCATGT  890

Query  849   AACAAAAAAGTTCATGGTGTTTAGAGCA--AATGAGGCTTCTGACGAAAAGA-AG-AAGA  904
             |||||||||||||||||||||||||| |  || ||| |  | || | ||| | || ||||
Sbjct  891   AACAAAAAAGTTCATGGTGTTTAGAG-AGGAA-GAG-CAACCGA-GTAAATACAGTAAGA  946

Query  905   CTATGATCTACACAGAACACATTGGAGATCTTTGCATTTTTCTTGGACATAGTGAGGCTT  964
               ||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||
Sbjct  947   AGATGATCTACACAGAAGACATTGGAGATCTTTGCATTTTTGTTGGTCATAGTGAGGCTT  1006

Query  965   TCTGCATCCCGGCTAG-TACGTCGTGTGGACTCGAGCCTAACTGCATCTATTTTGTTGGC  1023
             ||||| |||| ||||| | | ||   ||||||| |||||||||||||||||||||| |||
Sbjct  1007  TCTGCGTCCCAGCTAGCT-CATCCCCTGGACTCAAGCCTAACTGCATCTATTTTGTGGGC  1065

Query  1024  AATAACTTTGGTGTTTATGATCTCACCACCGAAACTTGCTCTACCTTT-T-ACACTAG-T  1080
              ||||||||||||||||||||||||||||| |||||||| |||  ||  | |||  || |
Sbjct  1066  TATAACTTTGGTGTTTATGATCTCACCACCAAAACTTGCACTATGTTCCTCACAGAAGAT  1125

Query  1081  GTAAGGCCACTAAAGAACGTTAGT-TTCCCTTACTGGCCTCC  1121
             | ||  ||| ||| |||  || |  |||||||||||||||||
Sbjct  1126  GAAAATCCATTAAGGAAA-TTGGAATTCCCTTACTGGCCTCC  1166


> Ahg946972 jgi|Araly1|946972|scaffold_703201.1
Length=706

 Score =  196 bits (106),  Expect = 2e-49
 Identities = 195/233 (84%), Gaps = 25/233 (11%)
 Strand=Plus/Plus

Query  644  TCAACTCTAGGCAGGAGAATGGGC-AACCC-AGCTTCATCGACTTGG-ATTATGA-AAAT  699
            |||||||||   |||||||| | | | ||| || | ||||||||||| ||| ||| ||| 
Sbjct  493  TCAACTCTA---AGGAGAAT-GACGAGCCCAAG-TCCATCGACTTGGAATT-TGACAAA-  545

Query  700  CTTCCAGAGTCGGTGTTTAAGCAGTTGGCGGGA-GTGAGTTCATGTTCCAAGACAGATCA  758
            |||||| |||| |||||| || ||||||| ||| |||||||||||||||| |||||| ||
Sbjct  546  CTTCCAAAGTCTGTGTTTCAGGAGTTGGC-GGACGTGAGTTCATGTTCCAGGACAGACCA  604

Query  759  CCTTGTGGAGTCACCCACCGGCCAACTTTTCCTCGTCAAGTGGTTCGTGGAGGACG-TGG  817
            |||||||||||||||||||||||||||||||||||||||||||  ||||||||||  || 
Sbjct  605  CCTTGTGGAGTCACCCACCGGCCAACTTTTCCTCGTCAAGTGGA-CGTGGAGGACCATGA  663

Query  818  AGGACCTTTGCGACAATACACCCATGCACGTAACAAAAAAGTTCATGGTGTTT  870
            || ||    |  |   ||||| |||||||||||||||||||||||||||||||
Sbjct  664  AG-AC----G--A---TACACTCATGCACGTAACAAAAAAGTTCATGGTGTTT  706


> Ahg946973 jgi|Araly1|946973|scaffold_703202.1
Length=672

 Score =  154 bits (83),  Expect = 1e-36
 Identities = 114/128 (89%), Gaps = 6/128 (5%)
 Strand=Plus/Plus

Query  678  CATCGACTTGG-ATTATGAAAATCTTCCAGAGTCGGTG-TTTAAGCAGTTGGCGGGA-GT  734
            ||||||||||| |||  || ||||||||| |||||||| || | | ||||||| ||| ||
Sbjct  488  CATCGACTTGGAATT-CGACAATCTTCCAAAGTCGGTGATTCATG-AGTTGGC-GGACGT  544

Query  735  GAGTTCATGTTCCAAGACAGATCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTCGT  794
            |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  545  GAGTTCATGTTCCAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTTGT  604

Query  795  CAAGTGGT  802
            ||||||||
Sbjct  605  CAAGTGGT  612



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42507052455


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5