BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14260.1 Length=1140 Score E Sequences producing significant alignments: (Bits) Value Ahg492225 jgi|Araly1|492225|fgenesh2_kg.7__1658__AT4G25920.1 366 2e-100 Ahg946972 jgi|Araly1|946972|scaffold_703201.1 196 2e-49 Ahg946973 jgi|Araly1|946973|scaffold_703202.1 154 1e-36 > Ahg492225 jgi|Araly1|492225|fgenesh2_kg.7__1658__AT4G25920.1 Length=1197 Score = 366 bits (198), Expect = 2e-100 Identities = 379/462 (82%), Gaps = 29/462 (6%) Strand=Plus/Plus Query 676 TTCATCGACTTGGATTATGAAAATCTTCCAGAGTCGGTGTTT-AAGCAGTTGGCGGGA-G 733 ||| |||||||||||| ||| |||||||||| ||||||||| ||| ||||||| ||| | Sbjct 718 TTCCTCGACTTGGATTTTGACGATCTTCCAGAATCGGTGTTTCAAG-AGTTGGC-GGACG 775 Query 734 TGAGTTCATGTTCCAAGACAGATCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTCG 793 ||||| ||||||| | ||| || ||||| ||||||||||||||||||||||||||||||| Sbjct 776 TGAGTACATGTTCTAGGACGGACCACCTAGTGGAGTCACCCACCGGCCAACTTTTCCTCG 835 Query 794 TCAAGTGGT-TCGTGGAGGACGTGGAGGACCTTTGCGACAA-TACACCCATGCA-C--GT 848 ||||||||| | | | |||| | |||||| || | |||| | ||| | || | | || Sbjct 836 TCAAGTGGTATGGCG-AGGATTTCGAGGACATT-G--ACAACTGCACAC-TGTATCATGT 890 Query 849 AACAAAAAAGTTCATGGTGTTTAGAGCA--AATGAGGCTTCTGACGAAAAGA-AG-AAGA 904 |||||||||||||||||||||||||| | || ||| | | || | ||| | || |||| Sbjct 891 AACAAAAAAGTTCATGGTGTTTAGAG-AGGAA-GAG-CAACCGA-GTAAATACAGTAAGA 946 Query 905 CTATGATCTACACAGAACACATTGGAGATCTTTGCATTTTTCTTGGACATAGTGAGGCTT 964 ||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| Sbjct 947 AGATGATCTACACAGAAGACATTGGAGATCTTTGCATTTTTGTTGGTCATAGTGAGGCTT 1006 Query 965 TCTGCATCCCGGCTAG-TACGTCGTGTGGACTCGAGCCTAACTGCATCTATTTTGTTGGC 1023 ||||| |||| ||||| | | || ||||||| |||||||||||||||||||||| ||| Sbjct 1007 TCTGCGTCCCAGCTAGCT-CATCCCCTGGACTCAAGCCTAACTGCATCTATTTTGTGGGC 1065 Query 1024 AATAACTTTGGTGTTTATGATCTCACCACCGAAACTTGCTCTACCTTT-T-ACACTAG-T 1080 ||||||||||||||||||||||||||||| |||||||| ||| || | ||| || | Sbjct 1066 TATAACTTTGGTGTTTATGATCTCACCACCAAAACTTGCACTATGTTCCTCACAGAAGAT 1125 Query 1081 GTAAGGCCACTAAAGAACGTTAGT-TTCCCTTACTGGCCTCC 1121 | || ||| ||| ||| || | ||||||||||||||||| Sbjct 1126 GAAAATCCATTAAGGAAA-TTGGAATTCCCTTACTGGCCTCC 1166 > Ahg946972 jgi|Araly1|946972|scaffold_703201.1 Length=706 Score = 196 bits (106), Expect = 2e-49 Identities = 195/233 (84%), Gaps = 25/233 (11%) Strand=Plus/Plus Query 644 TCAACTCTAGGCAGGAGAATGGGC-AACCC-AGCTTCATCGACTTGG-ATTATGA-AAAT 699 ||||||||| |||||||| | | | ||| || | ||||||||||| ||| ||| ||| Sbjct 493 TCAACTCTA---AGGAGAAT-GACGAGCCCAAG-TCCATCGACTTGGAATT-TGACAAA- 545 Query 700 CTTCCAGAGTCGGTGTTTAAGCAGTTGGCGGGA-GTGAGTTCATGTTCCAAGACAGATCA 758 |||||| |||| |||||| || ||||||| ||| |||||||||||||||| |||||| || Sbjct 546 CTTCCAAAGTCTGTGTTTCAGGAGTTGGC-GGACGTGAGTTCATGTTCCAGGACAGACCA 604 Query 759 CCTTGTGGAGTCACCCACCGGCCAACTTTTCCTCGTCAAGTGGTTCGTGGAGGACG-TGG 817 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 605 CCTTGTGGAGTCACCCACCGGCCAACTTTTCCTCGTCAAGTGGA-CGTGGAGGACCATGA 663 Query 818 AGGACCTTTGCGACAATACACCCATGCACGTAACAAAAAAGTTCATGGTGTTT 870 || || | | ||||| ||||||||||||||||||||||||||||||| Sbjct 664 AG-AC----G--A---TACACTCATGCACGTAACAAAAAAGTTCATGGTGTTT 706 > Ahg946973 jgi|Araly1|946973|scaffold_703202.1 Length=672 Score = 154 bits (83), Expect = 1e-36 Identities = 114/128 (89%), Gaps = 6/128 (5%) Strand=Plus/Plus Query 678 CATCGACTTGG-ATTATGAAAATCTTCCAGAGTCGGTG-TTTAAGCAGTTGGCGGGA-GT 734 ||||||||||| ||| || ||||||||| |||||||| || | | ||||||| ||| || Sbjct 488 CATCGACTTGGAATT-CGACAATCTTCCAAAGTCGGTGATTCATG-AGTTGGC-GGACGT 544 Query 735 GAGTTCATGTTCCAAGACAGATCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTCGT 794 |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || Sbjct 545 GAGTTCATGTTCCAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTTGT 604 Query 795 CAAGTGGT 802 |||||||| Sbjct 605 CAAGTGGT 612 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42507052455 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5