BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14270.1
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493483 jgi|Araly1|493483|fgenesh2_kg.7__2916__AT4G14270.1 669 0.0
> Ahg493483 jgi|Araly1|493483|fgenesh2_kg.7__2916__AT4G14270.1
Length=603
Score = 669 bits (362), Expect = 0.0
Identities = 475/529 (90%), Gaps = 9/529 (2%)
Strand=Plus/Plus
Query 4 ACTCGCTCTAAGACCCAGTTTGACTCGTTGATCAACG-A-AAGTGTGAGTTTGAGGTGAA 61
|||||||||||||| ||||||||||||| || | | | ||||||| ||||||||| |
Sbjct 1 ACTCGCTCTAAGACTCAGTTTGACTCGTCGA-CTTTGTAGCAGTGTGA-TTTGAGGTGGA 58
Query 62 AGATGACGGCGACGATAGATCGGAGGTTATCAACGCTGAATCCAAACGCGCCGGTGTTTG 121
|||||||||||| | |||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 59 AGATGACGGCGATGGTAGATCGGAGTTTATCGACGCTAAATCCAAACGCGCCGGTGTTTG 118
Query 122 ATCCGGTGGAATTTCGTGAGGTGGAGGATTTTTCACCGAAATGGTGGGATCTAGTAACGA 181
||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 119 ATCCGGTGGGATTTCGTGAGGTGGAGGATTTTTCACCGAAATGGTGGGATCTGGTGACGA 178
Query 182 CTTCGAAATGGTTCCGTGACTTTTGGCTCAGTGCTAACTCTGAGAATGAGTTCCTCGGCG 241
|||| ||||||||||||||||||||||||||||||||||| ||| ||||||| |||| |
Sbjct 179 CTTCCAAATGGTTCCGTGACTTTTGGCTCAGTGCTAACTCAGAGTTTGAGTTCGTCGGTG 238
Query 242 GCGACGATTTCTCAGTTATGGAAGAAGAGTTCGAGGAGATGATCGCATCGTCTGATGGTG 301
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 239 GCGATGATTTCTCAGTTATGGAAGAAGAGTTCGAGGAGATGATCGCGTCCTCTGATGGTG 298
Query 302 GATCCATGGCTGATACAGTTACAGAAGCAGATGTGGCTA-GTTATTTGAAGATGCTTTTG 360
|||| | |||||||||||| || ||||||||||| |||| || |||||||||||||||||
Sbjct 299 GATCTACGGCTGATACAGTAACCGAAGCAGATGTTGCTAAGT-ATTTGAAGATGCTTTTG 357
Query 361 AACATAGCGGAGTCTACGAAAGAGAAGATTTATAGATCGAAGGTTTCGTCTTGTTCACCA 420
|||||||| || |||| ||||||||||||||||||| | |||||||| |||||||||||
Sbjct 358 AACATAGCTGACTCTAAGAAAGAGAAGATTTATAGAGCTAAGGTTTCTTCTTGTTCACCG 417
Query 421 AAGTATAATCAGAAGA--A-GTACATGAATCCGAACTTTAATTGTCGCCGGAATCATCAT 477
|||||||||||||||| | ||| |||||||| ||||| ||||||||||||||||||||
Sbjct 418 AAGTATAATCAGAAGAGGAAGTATATGAATCCAAACTTCAATTGTCGCCGGAATCATCAC 477
Query 478 ATCTATCAGCCACGGTGAAGCTTCTAGAAGGAACAAAGCTCTTCTTCTT 526
|| ||||||||||||||||| ||||| ||| |||||||||||| |||||
Sbjct 478 ATTTATCAGCCACGGTGAAGTTTCTATAAGAAACAAAGCTCTTTTTCTT 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25237371054
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5