BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14280.1
Length=2508
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355384 jgi|Araly1|355384|fgenesh1_pg.C_scaffold_7002557 3563 0.0
Ahg946967 jgi|Araly1|946967|scaffold_703196.1 1790 0.0
> Ahg355384 jgi|Araly1|355384|fgenesh1_pg.C_scaffold_7002557
Length=2394
Score = 3563 bits (1929), Expect = 0.0
Identities = 2244/2398 (94%), Gaps = 13/2398 (1%)
Strand=Plus/Plus
Query 1 ATGGTTGACCGTCCTACCGATGTGGTCGTAGAAGTCGGTTCTTCCGGCAGAACTATTTTC 60
|||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGTTGACCGTACTACCGATGTCGTCGTAGAAGTCGGTTCTTCTGGCAGAACTATTTTC 60
Query 61 CGACCGGACGAGACTCCGACTCCAGAACCTCGGAGACCAACACAATTGCCGCCAGTTCCT 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 CGACCGGACGAGACTCCGACTCCAGAACCTCGGAGACCAACACAATT---GCCAGTTCCT 117
Query 121 GCACCGGAGAAAAAACTGACCCTTTTTGCCTTAAGACTCGCTGTTCTTGAGAAGATTGCT 180
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 118 GCGCCGGAGAAAAAACTGACACTTTTTGCCTTAAGACTCGCTGTTCTTGAGAAGATTGCT 177
Query 181 TCAGGGTTGGGATCTTTAGGTTTCGTGTGGGCCACGGTTGTTCTTCTTGGTGGATTCGCT 240
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCACGCTTGGGATCTTTAGGTTTCGTGTGGGCCACGGTTGTTCTTCTTGGTGGATTCGCT 237
Query 241 GGAAGTTTAGAGATAACAGATTTCTGGTTTGTTACTGTGATTCTTGTTATTGAAGGAGCT 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 238 GGAAGTTTAGAGATAACAGATTTCTGGTTTGTTACTGTGATTCTTGTTATCGAAGGAGCT 297
Query 301 AGGCTTTTCAGTAGAAGCCACGAGCTTGAACTGCAGCATCAGTCTAAGTACACAATCTCT 360
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 298 CGGCTTTTCAGTAGAAGCCATGAGCTTGAACTGCAGCATCAGTCTAAATACACAATCTCT 357
Query 361 GGAATCAACATCTTCCGGTTCCTTGTCAAACAAATTAACCAAATATTTCACCAGGTGGCT 420
|||||||||||||||||||||||||| ||||| ||| ||||||||| ||||||| ||||
Sbjct 358 GGAATCAACATCTTCCGGTTCCTTGTAAAACACGTTATCCAAATATTCCACCAGGCGGCT 417
Query 421 CACATTGCCGGAGA-CGACAATAGACCATCGGTTCGAGAAACGA-GAACCGTACAAAGGA 478
||||||||||| || |||||| |||||| |||||||||||| || || ||||| || |
Sbjct 418 CACATTGCCGG-GAACGACAACAGACCACCGGTTCGAGAAAGGAAGATT-GTACAGAGAA 475
Query 479 ATTCGGGACACATCACGCGGACAAGGACATGGAAAAGCTCAGATGTTCCTATGTTGCCTT 538
||||||| || |||||| ||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 476 ATTCGGGGCAGATCACGAGGACAAGAACATGGAAAAGTTCAGATGTTCCTATGTTACCTT 535
Query 539 ACACAGGATGGGTTTTTGTTTCAAGAAACGTGAGTAGAATCTTCTATTGGCTCCAGATTG 598
|||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 536 ACACTGGATGGGTCTTTGTTTCAAGAAACGTGAGTAGAGTCTTCTATTGGCTTCAGATTG 595
Query 599 CTTCTGCTTTCGCCAGCATTTTTATCTCCACGATCCAACTCATCAAACAAGACTATGGAG 658
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 596 CTTCTGCTTTCGCCAGCATTGCTATCTCCACGATCCAACTCATCAAGCAAGACTATGGAG 655
Query 659 GCAACGACTTGAAACCCAAAAGCACCAATCTTCACGCAGCTTTGACTCTCTTCTACTCTC 718
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 656 GCAACGACTCGAAACCCAAACGCACCAATCTTCACGCAGCTTTGACTCTCTTCTACTCTC 715
Query 719 TAGCCCTAGCCGAGGCTCTTCTGTTCCTTGTTGAGAAAGCTTACTGGGAATATATGATTA 778
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 716 TAGCCCTAGCCGAGGCTCTTCTGTTTCTTGTTGAGAAAGCTTACTGGGAATATATGATTA 775
Query 779 GTGTTATCCACATTCTTGAGAAAGTGAATGAAGAATGCGGTCTTGAGAGATTTGGTACGG 838
|||||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 776 GTGTTATCAAGATTCTTGAGAAAGTAAATGAAGAATGCGGTCTTGAGAGATTTGGCACGG 835
Query 839 GATCGGTGAGAAGATTCTTCTATGATGCCTACTCAAGATGCCTCAACGGGAGCATCTTCG 898
| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 836 GCTCGGTGAGAAGATTTTTCTATGATGCCTATTCAAGATGCCTCAATGGGAGCATCTTCG 895
Query 899 ACGGATTGAAGATGGATATGGTGATCTTTGCCATGGAGCTCTTGGTAGCGAATTCTCTTG 958
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 896 ACGGATTGAAGATGGATATGGTGATTTTTGCCATGGAGCTCTTGGTAACGAATTCTCTTG 955
Query 959 ATGAGCAGCTCATTGGAGCAGAGATTCTTTCGATATTCTCAACCCACGACGACTATTCGG 1018
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 956 ATGAGCAGCTCATTGGAGCAGAGATTCTCTCGATATTCTCAACCCACGACGACTATTCGG 1015
Query 1019 TTGATACTTTGCAGAAGATTGGGACAAATCTTGCAATCATAGAAAGGTTAGTGGAGATGT 1078
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1016 TTGATACTTTGCAGAAGATTGGGACAAATCTGGCAATCATAGAAAGGTTAGTGGAGATGT 1075
Query 1079 TGAATTGGAGAGACAAAAATCAAGAAGATGTGAGAATGTCAGCTGCAGAGATTCTCTCAA 1138
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TGAATTGGAGAAACAAGAATCAAGAAGATGTGAGAATGTCAGCTGCAGAGATTCTCTCAA 1135
Query 1139 GATTAGCTAGTAAGAAGCAGAACTCTCTGAGAGTTGCGGGGATCCCGGGAGCGATTGAGT 1198
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1136 GATTAGCTAGTAAGAAGCAGAATTCTCTGAGAGTTGCGGGGATCCCGGGGGCGATTGAGT 1195
Query 1199 CGATATCTTCTCTTTTAGAGAGCACGAGAGATTCAGGTGAAGCCACTGATGAGATTGGAG 1258
||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||
Sbjct 1196 CGATATCTTCTCTTTTAGAGAACACTAGAGATTCGGGTGAAGCCACGGATGAGATTGGAG 1255
Query 1259 AACAGAGTATAAACCA-TTCAAATTTATGGACATTGAACAATCTTGGACTGCTGATTCTG 1317
|| | ||||| || || || |||||||||||| |||||||||||||||||| ||||||||
Sbjct 1256 AAAATAGTATTAATCAATT-AAATTTATGGACGTTGAACAATCTTGGACTGTTGATTCTG 1314
Query 1318 AAAAGGCTAGCTCGAGATCATGAGAACTGTGGAAAAATTGGGAAAACAAAAGGGTTACTT 1377
||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||
Sbjct 1315 AAAAGGCTAGCTCGAGATCATGATAACTGTGGGAAGATTGGTAAAACAAAAGGGTTACTT 1374
Query 1378 TCAAAGATCATTGACTTCACTTATGCTGAGAAGAATTTGTTGGAAAA-TCCAAATGTTGC 1436
|||||||||||||||||||||||||||||||||| ||||| ||||| || || ||||||
Sbjct 1375 TCAAAGATCATTGACTTCACTTATGCTGAGAAGAGGTTGTTAGAAAAGTCGAA-TGTTGC 1433
Query 1437 TGTTGCAGAGCCTTATAAGATCTTGGCTGTGAAACGGTCTTTGAAGCTGTTAAAGAAGCT 1496
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 GGTTGCAGAGCCTTATAAGGTCTTGGCTGTGAAACGGTCTTTGAAGCTGTTAAAGAAGCT 1493
Query 1497 GGTGAGCACGACAGGCACAACAGGGAAGAACTTGAGGATGACTATCTCTGGGATTGTCTT 1556
||| |||||||| || |||| ||||||||||| ||||||| | ||||||||||||||||
Sbjct 1494 GGTTAGCACGACCGGTGCAACGGGGAAGAACTTAAGGATGATTGTCTCTGGGATTGTCTT 1553
Query 1557 CACAGTGAGCAACATTAGGGAAACATTACATCATGGAAAGAGTCAGCCTCATTTGCAGAA 1616
|||||||||||||||||||||||||||||| || || |||||||| ||| ||||||| ||
Sbjct 1554 CACAGTGAGCAACATTAGGGAAACATTACACCACGGGAAGAGTCAACCTGATTTGCAAAA 1613
Query 1617 GCTTGGTGCAGAGATTTTGACTTTCCTTGCGTTTGAAGAAGGTGCAACCGAGAAAATCGG 1676
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1614 GCTTGGTGCAGAGATCTTGACTTTCCTTGCGTTTGAAGAAGGTGCAACCGAGAAAATTGG 1673
Query 1677 AGGCACGGGCGGGGTTTTGAAAGGGCTTCTCTGCATATTCTTGAACAATGAGATTCCAAA 1736
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1674 GGGCACGGGCGGGGTTTTGAAAGGACTTCTCTGCATATTTTTGAACAATGAGATTCCAAA 1733
Query 1737 GGACAAAAGTGGTGTGAGAGTCTCTGCTGGTGAATCTGTTGCTATGCTAGCTCAAGGAAG 1796
||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1734 GGATAAAAGTGGTGTGAGAGTCTCTGCTGGTGAATCTATAGCTATGCTAGCTCAAGGAAG 1793
Query 1797 TAAAAGCAATTGCCAAAAGATATTGAGAGCAAATGTTCTTAAGGGACTCGTTGAAGCGTT 1856
|||||||||||||||| ||| |||||| ||||||||||||||||||||||||| || ||
Sbjct 1794 TAAAAGCAATTGCCAACGGATCTTGAGATCAAATGTTCTTAAGGGACTCGTTGAGGCTTT 1853
Query 1857 GGACAACCCGTTGATTCGGTTGAATGCAGCGAGGATCTTGCGTAATCTCTGTGCATATAC 1916
|||||||||||||||||||||||| |||| || |||||||| |||||||| ||||||||
Sbjct 1854 AGACAACCCGTTGATTCGGTTGAATTCAGCAAGAATCTTGCGGAATCTCTGCGCATATAC 1913
Query 1917 AGCTCCTGGTCAGTTCAATGAACAGATGAAGGAAGTTATTAAATCTGCAGGAGCAACAGT 1976
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1914 AGCTCCTGGTCAGTTCAATGAAGAGATGAAGAAAATTATTAAATCTGCAGGAGCAACAGT 1973
Query 1977 TCTTAAGGCAATAAAGTCTGAAGAGAGGAAACCTCAAGAAGTTATGGTGGGATTAGCACC 2036
||||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1974 TCTTATGGCAATCAAGTCTGAAGACCGAAAACCTCAAGAAGTTATGGTGGGATTAGCACC 2033
Query 2037 ACATATTCTCAAGTTAATGAATACTCCCGAAGAATTGAGAGGGATGTTCGAGGAAGCCGG 2096
|||||||||||||||||||| |||||| |||||| |||||||||| ||||||||||| ||
Sbjct 2034 ACATATTCTCAAGTTAATGAGTACTCCTGAAGAACTGAGAGGGATATTCGAGGAAGCGGG 2093
Query 2097 AGTAACCGAGGAAGAACTAGCCAAGGCATTAATCAATATCCTCAAGAGATATGAACAGCC 2156
||||| |||||||||||||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct 2094 AGTAAGCGAGGAAGAACTAGCCAATGCATTAATCAATATTCTCAAGAAATATGAACAGCC 2153
Query 2157 AGTTCCAAAGGTTCCAAGAATCAGGAGGTTTGCAATAGAGCTAACCATTGCGATGATGAA 2216
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 2154 AGTTCCAAAGGTTCCAAGAATTAGGAGGTTCGCAATAGAGCTAACCATTGCGATGATGAA 2213
Query 2217 AGCTAA-CGTTGAGACTGTCAAGACCTTCCAAAACCTTGAGATGAAGAATGAATTAGAGA 2275
|||||| | | ||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2214 AGCTAATCCT-GAGACGGTCAAGACTTTCCAAAACCTTGAAATGAAGAATGAATTAGAGA 2272
Query 2276 CCGTCTTTGAGACCGCGGCTGAGCTTGAGAACTTTGATATATTTTCTGGCACGGTCGGTT 2335
| |||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 2273 CTATCTTCGAGACCGCGGCTGAGCTTGAGAACTTTGATATATTCTCTGGCACAGTTGGTT 2332
Query 2336 TGGCACGCCATGGTTCAACTATCAATGAACTCATTGAAGAAGCAATGCTGTTGTTGAG 2393
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2333 TGGCACGCCATGGCTCAACGATCAATGAACTCATTGAAGAAGCAATGCTGTTGTTGAG 2390
> Ahg946967 jgi|Araly1|946967|scaffold_703196.1
Length=2148
Score = 1790 bits (969), Expect = 0.0
Identities = 1379/1570 (88%), Gaps = 56/1570 (4%)
Strand=Plus/Plus
Query 843 GGTGAGAAGATTCTTCTATGATGCCTACTCAAGATGCCTCAACGGGAGCATCTTCGACGG 902
||||| |||||||||||| || |||||||| ||||| ||| | |||| ||||||||||||
Sbjct 604 GGTGAAAAGATTCTTCTACGACGCCTACTCCAGATGTCTCCATGGGAACATCTTCGACGG 663
Query 903 ATTGAAGA-TGGATATGGTGATCTTT-GCCATGGAGCTCTTGGTAG-CGAATTCTCTTGA 959
|| |||| ||| ||||| || ||| ||||||||| | ||||| | ||||||||| |||
Sbjct 664 CTTAAAGATTGG-TATGGCCAT-TTTCGCCATGGAGATTTTGGT-GTCGAATTCTCCTGA 720
Query 960 TGAGCAGCTCATTGGAGCAGAGATTCTTTCGATATTCTCAACCCACGACGACTATTCGGT 1019
|||||| |||| ||||||| | ||||| || | |||||| ||| || | |||||||| ||
Sbjct 721 TGAGCAACTCACTGGAGCAAACATTCTCTCTAGATTCTCGACCAACCAAGACTATTCTGT 780
Query 1020 TGATACTTTGCAGAAGATTGGGACAAATCTTGCA-ATCATAGAAAGGTTAGTGGAGATGT 1078
||||||| ||||||||||||| || ||||| | | ||| |||| ||||| |||||||||
Sbjct 781 TGATACTCTGCAGAAGATTGGAACGAATCTCG-AGATCGTAGAGCGGTTACTGGAGATGT 839
Query 1079 TGAATTGGAGAGACAAAAATCAAGAAGATGTGAGAATGTCAGCTGCAGAGATTCTCTCAA 1138
||||||||||| || | |||||| ||| |||||||| ||||||||| |||||||||||||
Sbjct 840 TGAATTGGAGAAACCAGAATCAACAAGTTGTGAGAAGGTCAGCTGCTGAGATTCTCTCAA 899
Query 1139 GATTAGCTAGTAAGAAGCAGAACTCTCTGAGAGTTGCGGGGATCCCGGGAGCGATTGAGT 1198
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 900 GATTAGCTAGTAAGAAGCAGAATTCTCTGAGAGTTGCGGGGATCCCTGGAGCGATTGAGT 959
Query 1199 CGATATCTTCTCTTTTAGAGAGCACGA-GAGATTCAGGTGAAGCCACTGATGAGATTGGA 1257
| |||| |||||||||| ||| ||| | ||||||||||| ||| | | | | |
Sbjct 960 CCATATATTCTCTTTTACAGACCAC-AGGAGATTCAGGTCAAG-C-C-------A-T-G- 1006
Query 1258 GAACAGAGTATAAACCATTCAAATTTATGGACATTGAACAATCTTGGACTGCTGATTCTG 1317
| || | || || |||||||||||||| |||| || |||||||||||||||||||
Sbjct 1007 G-AC---G-AT----CAATCAAATTTATGGACGTTGATCAGTCTTGGACTGCTGATTCTG 1057
Query 1318 AAAAGGCTAGCTCGAGATCATGAGAACTGTGGAAAAATTGGGAAAACAAAAGGGTTACTT 1377
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 1058 AAAAGGCTAGCTCGAGATCATGATAACTGTGGCAAGATTGGGAAAACAAAAGGGTTACTT 1117
Query 1378 TCAAAGATCATTGACTTCACTTATGCTGAGAAGAAT-TTGTTGGA-AAATCCAAATGTTG 1435
||||||||||||||||||||||||||||| ||| || |||| || ||||| ||||
Sbjct 1118 TCAAAGATCATTGACTTCACTTATGCTGATAAG-ATGCTGTTAGAGGAATCC----GTTG 1172
Query 1436 CTGTTGCAGAGCCTTA-TAAGATCTTGGC-TGTGAAACGGTCTTTGAAGCTGTTAAAGAA 1493
| | ||| || || | ||||| | || ||||||||||||||||||||||||||||||
Sbjct 1173 C----G-AGA-CC-TATTCAGATCAT-GCTTGTGAAACGGTCTTTGAAGCTGTTAAAGAA 1224
Query 1494 GCTGGTGAGCACGACAGGCACAACAGGGAAGAACTTGAGGATGA-CTATCTCTGGGATTG 1552
||||||| |||||| || |||| |||||||||||||||| || ||| |||| | ||
Sbjct 1225 CCTGGTGACCACGACTGGTGCAACGGGGAAGAACTTGAGGA-GAGATATATCTGCCAATG 1283
Query 1553 TCTTCACAGTGAGCAACATTAGGGAAACATTACATCATGGAAAGAGTCAGCCTCATTTGC 1612
|||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||
Sbjct 1284 TCTTCACAGTGAGCAACATTAGGGAAACATTACACCATGGGAAGAGTCAACCTGATTTGC 1343
Query 1613 AGAAGCTTGGTGCAGAGATTTTGACTTTCCTTGCGTTTGAAGAAGGTGCAACCGAGAAAA 1672
||||||| ||||||||||| ||||||| |||||| ||||| ||||||||| |||||||||
Sbjct 1344 AGAAGCTCGGTGCAGAGATCTTGACTTCCCTTGCATTTGACGAAGGTGCAGCCGAGAAAA 1403
Query 1673 TCGGAGGCACGGGCGGGGTTTTGAAAGG-GCTTCTCTGCATATTCTTGAACAATGAGATT 1731
| || ||||| |||||||||||| |||| ||||||||||||||||||||||||||| |
Sbjct 1404 TTGGGGGCACAGGCGGGGTTTTG-AAGGCACTTCTCTGCATATTCTTGAACAATGAGCTC 1462
Query 1732 CCAAAGGACAAAAGTGGTGTGAGAGTCTCTGCTGGTGAATCTGTTGCTATGCTAGCTCAA 1791
||| || ||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1463 CCAGTGGGTAAAAGTGGTGTGAGAGTCTCTGCTGGTGAATCTATAGCTATGCTAGCTCAA 1522
Query 1792 GGAAGTAAAAGCAATTGCCAAAAGATATTGAGAGCAAATGTTCTTAAGGGACTCGTTGAA 1851
||||||||||||||||||||| ||| |||||| ||||||||||| || ||||||||||
Sbjct 1523 GGAAGTAAAAGCAATTGCCAACGGATCTTGAGATCAAATGTTCTTCAGAGACTCGTTGAG 1582
Query 1852 GCGTTGGACAACCCGTTGATTCGGTTGAATGCAGCGAGGATCTTGCGTAATCTCTGTGCA 1911
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 1583 GCGTTGGACAACCCATTGATTCGGTTGAATGCAGCGAGAATCTTGCGGAATCTCTGCGCA 1642
Query 1912 TATACAGCTCCTGGTCAGTTCAATGAACAGATGAAGGAAGTTATTAAATCTGCAGGAGCA 1971
||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1643 TATACAGCTCCTGATCAGTTCAATGAAAAGCTGAAGGAAGTTATTAAATCTGCAGGAGCA 1702
Query 1972 ACAGTTCTTAAGGCAATAAAGTCTGAAGAGAGG-AAACCTCAAGAAGTTATGGTGGGATT 2030
|||||||||| |||||| |||| ||||||| || |||||||||||||||||| |||||||
Sbjct 1703 ACAGTTCTTATGGCAATCAAGTATGAAGAG-GGAAAACCTCAAGAAGTTATGTTGGGATT 1761
Query 2031 AGCACCACATATTCTCAAGTTAATGAATACTCCCGAAGAATTGAGAGGGATGTTCGAGGA 2090
|||||| |||||||| |||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 1762 AGCACCGCATATTCTGAAGTTAATGAGTACTCCTGAAGAATTGAGAGGGATATTCGAGGA 1821
Query 2091 AGCCGGAGTAACCGAGGAAGAACTAGCCAAGGCATTAATCAATATCCTCAAGAGATATGA 2150
||| |||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct 1822 AGCGGGAGTAACCGAGGAAGAACTAGCCAAGGCATTAACCAATATTCTCAAGAAATATGA 1881
Query 2151 ACAGCCAGTTCCAAAGGTTCCAAGAATCAGGAGGTTTGCAATAGAGCTAACCATTGCGAT 2210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1882 ACAGCCAGTTCCAAAGGTTCCAAGAATCAGGAGGTTTGCAATAGAGCTAACCATTGCAAT 1941
Query 2211 GATGAAAGCTAA-CGTTGAGACTGTCAAGACCTTCCAAAACCTTGAGATGAAGAATGAAT 2269
|||||||||||| | | ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 1942 GATGAAAGCTAATCCT-GAGACGGTCAAGACTTTCCAAAACCTTGAAATGAAGAATGAAT 2000
Query 2270 TAGAGACCGTCTTTGAGACCGCGGCTGAGCTTGAGAACTTTGATATATTTTCTGGCACGG 2329
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2001 TAGAGACCGTCTTTGAGACCGCGGCTGAGCTTGAGAACTTTGATATATTCTCTGGCACGG 2060
Query 2330 TCGGTTTGGCACGCCATGGTTCAACTATCAATGAACTCATTGAAGAAGCAATGCTGTTGT 2389
| ||||||||| | ||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 2061 TTGGTTTGGCAAGTCATGGCTCAACAATAAATGAACTCATTGAAGAAGCAATGCTGTTGT 2120
Query 2390 TGAGGTAGAC 2399
|||| |||||
Sbjct 2121 TGAGTTAGAC 2130
Score = 339 bits (183), Expect = 8e-92
Identities = 289/338 (86%), Gaps = 15/338 (4%)
Strand=Plus/Plus
Query 38 GTTCTTCCGGCAGAACTATTTTCC-GA-CCGGACGAGAC-TCCGACTCCAGAACCTCGGA 94
||||||| |||||||||| ||||| || | || |||||| ||| ||||||||||||||||
Sbjct 72 GTTCTTCTGGCAGAACTA-TTTCCAGATCAGG-CGAGACTTCC-ACTCCAGAACCTCGGA 128
Query 95 GACCAACACAATTGCCGCCAGTTCCTGCACCGGAGAAAAAACTGACCCTTTTTGCCTTAA 154
||| | ||| ||| | || || || |||||||||||||||| ||||||||||||
Sbjct 129 GACTGATACAGTTG--G-TAGCCCCAGCGCCGGAGAAAAAACTGAATCTTTTTGCCTTAC 185
Query 155 GACTCGCTGTTCTTGAGAAGATTGCTTCAGGGTTGGGATCTTTAGGTTTCGTGTGGGCCA 214
|||| ||||||||||||||||||||| || |||||||||||||||| ||||||||||| |
Sbjct 186 GACTGGCTGTTCTTGAGAAGATTGCTACACGGTTGGGATCTTTAGGATTCGTGTGGGCTA 245
Query 215 CGGTTGTTCTTCTTGGTGGATTCGCTGGAAGTTTAGAGATAACAGATTTCTGGTTTGTTA 274
| ||||| |||||||||||||||| ||||||||| |||| | ||||||||||||||||||
Sbjct 246 CAGTTGTCCTTCTTGGTGGATTCGTTGGAAGTTTGGAGACATCAGATTTCTGGTTTGTTA 305
Query 275 CTGTGATTCTTGTTATTGAAGGAGCTAGG-CTTTTCAGTAGAAGCCACGAGCTTGAACTG 333
|||||||||||||| | |||||| || || |||| ||| |||||||| ||||||||||||
Sbjct 306 CTGTGATTCTTGTTGTCGAAGGATCTCGGACTTT-CAGCAGAAGCCATGAGCTTGAACTG 364
Query 334 C-AGCAT-CAGTCTAAGTACACAATCTCTGGAATCAAC 369
| | ||| | |||||| |||||| ||||| ||||||||
Sbjct 365 CCA-CATTC-GTCTAAATACACAGTCTCTCGAATCAAC 400
Score = 167 bits (90), Expect = 4e-40
Identities = 160/193 (83%), Gaps = 8/193 (4%)
Strand=Plus/Plus
Query 565 AACGTGAGTAGAATCTTCTATTGGCTCCAGATTGCTTCTGCTTTCGCCAGCATTTTTATC 624
||| |||| || ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 398 AACTTGAGCAGCGTCTTCTATTGGCTCCAGATTGCTTCTGCTTTCGCCAGCATTGTTACC 457
Query 625 TCCACGATCCAA-CTCATCAAACAAGACTATGGAGGCAACGACTTGAAACCCAAAAGCAC 683
|||| | || || |||||||| ||||||||| || |||||||||||||||||| | |
Sbjct 458 TCCATGTTC-AAGCTCATCAAGCAAGACTATAGAAGCAACGACTTGAAACCCA----C-C 511
Query 684 CAATCTTCACGCAGCTTTGACTCTCTTCTACTCTCTAGCCCTAGCCGAGGCTCTTCTGTT 743
||| || || | ||||||||||||||||||||| || | || |||| | ||||| | ||
Sbjct 512 -AATTTTTACTCTGCTTTGACTCTCTTCTACTCTATATCGCTTGCCGCGCCTCTTATCTT 570
Query 744 CCTTGTTGAGAAA 756
||||| ||||||
Sbjct 571 TCTTGTCGAGAAA 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94539988090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5