BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14290.1
Length=1967
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890926 jgi|Araly1|890926|Al_scaffold_0007_2912 2573 0.0
Ahg930379 jgi|Araly1|930379|scaffold_302836.1 1240 0.0
> Ahg890926 jgi|Araly1|890926|Al_scaffold_0007_2912
Length=1674
Score = 2573 bits (1393), Expect = 0.0
Identities = 1583/1677 (94%), Gaps = 3/1677 (0%)
Strand=Plus/Plus
Query 225 ATGGAGCAGCTTGTTAACTTCGTCATTCGACCTCCAAGAGCTGAATACAATCCAGAACAT 284
||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGAGCAGCTTGTTAACTTCATTATTCGACCTCCAAGAGCTGAATACAATCCGGAACAT 60
Query 285 GATCTCTTGGAACAAGAGTTCTTGCTTAAAGGGAGATGGTACCAGAGGAAAGATTTAGAG 344
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 61 GATCTCTTGGAACAAGAGTTCTTGCTTAAAGGAAGATGGTATCAGAGGAAAGATTTAGAG 120
Query 345 GTTAAAAACATCAGAGGAGATATCCTTCAGTGTAGTCATTACATGCCAGTTGAGCGTCCT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTAAAAACATCAGAGGAGATATCCTTCAGTGTAGTCATTACATGCCAGTTGAGCGTCCT 180
Query 405 GAAGATAGGCCTCTACCTTGTGTAATATACTGCCATGGCAACAGTGGATGTAGAGCTGAT 464
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GAAGATAGGCCTCTACCTTGTGTAATATACTGCCATGGAAACAGTGGATGTAGAGCTGAT 240
Query 465 GCCAGTGAAGCTGCGATCGTATTACTTCCTTCAAACATCACGATTTTCACGCTTGACTTT 524
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GCCAGTGAAGCTGCGATCGTATTACTTCCTTCAAACATCACGATTTTCACCCTTGACTTT 300
Query 525 TCGGGATCCGGTCTCTCTGGCGGGGAGCATGTCACTTTGGGTTGGAACGAAAAAGATGAT 584
|||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 301 TCGGGATCTGGTCTCTCTGGCGGGGAGTATGTCACATTGGGTTGGAACGAAAAAGATGAT 360
Query 585 CTGAAGGCTGTGGTTGAGTATTTGCGCACGGATGGGAATGTCTCCCTGATTGGCTTATGG 644
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 CTGAAAGCTGTGGTTGAGTATTTGCGCACGGATGGAAATGTCTCCCTGATTGGCTTATGG 420
Query 645 GGTCGTTCAATGGGTGCTGTCACAAGCTTGATGTACGGAGCAGAGGATCCCTCTATCGCA 704
|||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct 421 GGTCGTTCAATGGGTGCTGTCACAAGTTTGATGTATGGAGCTGAGGATCCCTCTATTGCA 480
Query 705 GCGATGGTTCTAGACAGCCCATTCTCTGATTTGGTTGATTTGATGATGGAGCTTGTAGAT 764
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 481 GCGATGGTTCTAGACAGCCCGTTCTCTGATTTGGTTGATTTGATGATGGAACTTGTAGAT 540
Query 765 ACGTATAAGTTCCGACTACCGAAGTTTACTATAAAATTTGCAATACAATATATGCGGAGA 824
|| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACATATAAGTTCCGGTTACCAAAGTTTACTATAAAATTTGCAATACAATATATGCGGAGA 600
Query 825 GCTGTTCAGAAGAAAGCCAATTTTAACATAACGGATCTCAACACCATTAAGGTAGCGAAA 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCTGTTCAGAAGAAAGCCAATTTTAACATAACGGATCTCAACACCATTAAGGTAGCGAAA 660
Query 885 TCTTGTTTTGTTCCTGTTTTATTTGGACATGCCGTAGATGATGACTTTATTCAGCCTCAT 944
||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 661 TCTTGCTTTGTTCCTGTTTTATTTGGACATGCCATAGACGATGACTTTATTCAGCCTCAT 720
Query 945 CACTCAGAGCGTATATATGAAGCATACATAGGAGACAAAAATATCATCAAATTCGATGGA 1004
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 CACTCAGAGCGTATATATGAAGCATACATAGGAGACAAAAATATCATCAAATTCGAGGGA 780
Query 1005 GACCACAATTCACCACGGCCACAATTCTACTTTGATTCAATAAACATCTTTTTCCATAAC 1064
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 GACCACAATTCACCACGGCCACCATTCTACTTTGATTCAATAAACATCTTTTTCCATAAT 840
Query 1065 GTTCTTCAACCTCCAGAGGTGGTTGGGCCAACATTTTTTGACCCGGTGGATGACTACTTT 1124
|||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 841 GTTCTTCAACCTCCGGAGGTGGTCAAGCCAACATTTTTTGACCCGGTGGATGATTACTTT 900
Query 1125 GCTAAGGGCAGTTGGAGCACCATGCAACAACTAAGTTCTCCCCCATCCTCAGCACAGAAA 1184
| ||||||||||||| |||||| ||| ||||||||||||| | ||||||||||||||||
Sbjct 901 TCCAAGGGCAGTTGGAACACCATTCAAGAACTAAGTTCTCCACAATCCTCAGCACAGAAA 960
Query 1185 AGTTTAGCTCCAGGTAGCACCTCTGATGCTATAAATGAAGTCCGCTTAAAAAGACCTATG 1244
||||||| | |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 961 AGTTTAGTTGCAGGAAGCACCTCCGATGCTATAAATGAAGTCCGCTTAAAAAGACCTATG 1020
Query 1245 AGTCGCACAGAGGTTCCTTCCAACGACCCATCTAATCAATCGTCATCAGAAACCAAGGAA 1304
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 1021 AGTCGCACAGAGGTTCCTTCCAATGACCCATCTAACCAATCATCATCAGAAACCAAGGAA 1080
Query 1305 AAAGAGAGTCTTGAAGTCTCCAGTAGTTCATCTTCTGATATGATCAGTTTTGATTTGTCG 1364
||||||| | |||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1081 AAAGAGAATAATGAAGTCTCCAGTAGTTCATCTTCTGATATGATCAGCTTCGATTTGTCG 1140
Query 1365 AATGGAGATCCATATCCTCCTCATCTCGCAGTAGCTTTAGATGATGATCAATATGTGGAG 1424
|||||||||||||||||||||||||| || |||||||||||||||||||| | |||||||
Sbjct 1141 AATGGAGATCCATATCCTCCTCATCTTGCGGTAGCTTTAGATGATGATCAGTTTGTGGAG 1200
Query 1425 TTTCACGTAGATGAGCTGGCAGATTTTCCATCAAATGCAGAGGAAGAAGAGAGGATGCTG 1484
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||
Sbjct 1201 TTTCACGTAGATGAGCTGGCAGACTTTCCATCTAATGCAGAGGAAGAAGAGAGGATGTTG 1260
Query 1485 ATGGAAGCGGTGATGAAATCGCTGAAGGACATGGAGGTTGAACAAACTCATCAGAAAAAA 1544
|||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||
Sbjct 1261 ATGGAAGCGGTGATGAAATCACTGAAGGACATGGAGGTTGAA-A--CTCATCAGAACAAA 1317
Query 1545 GAACCTTCCAGGACCAATACAGAGACCAGTGAAGGTAATGCTGCTGCTTCTACTACAGAA 1604
||||| |||| ||||||||||||| || |||||||||||||||| ||||||||||||||
Sbjct 1318 GAACCCTCCAACACCAATACAGAGAACACTGAAGGTAATGCTGCTTCTTCTACTACAGAA 1377
Query 1605 CCAGAACTGGCACTTTCTGATACAGATTCTGCTTCTGGTCCAACACCATGTAACCATGAT 1664
| |||| |||||| |||||| |||| | ||||| |||||||||||||||||||||||| |
Sbjct 1378 CAAGAATTGGCACATTCTGAGACAGCTCCTGCTCCTGGTCCAACACCATGTAACCATGGT 1437
Query 1665 GCACGATTATCTTCTGTAGCCAGTGTTCCATCTAAAACATCAGATTCTCTGCCGGGACCT 1724
|| |||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1438 GCGCGATCATCTTCTGAAGCCAGTGTTCCATTTAAAACATCAGATTCTCTGCCAGGACCT 1497
Query 1725 GTAAATGGTTTTGTTCCTGGTGCTTCGCCTAAAACGAGTCAAAACAAAAATGATGTCATT 1784
|||||||||||||||||||||||||| || ||||||||||| |||||||| || ||||||
Sbjct 1498 GTAAATGGTTTTGTTCCTGGTGCTTCACCCAAAACGAGTCAGAACAAAAACGACGTCATT 1557
Query 1785 GATTTGTCAGCACGTACAAAGGCAACAGTGACTGTGGTTGGACGTAGTAGCACATCAGGA 1844
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GATTTATCAGCTCGTACAAAGGCAACAGTGACTGTGGTTGGACGTAGTAGCACATCAGGA 1617
Query 1845 AACGTTTTAGAGGGGTTATTACGCCGATGGGATCTTAATTTCTTCAAAAGTAGATAA 1901
||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 1618 AACGTTTTAGATGGGTTATTACGTCGATGGGATCTTAACTTCTTCAAAGGTAGATAA 1674
> Ahg930379 jgi|Araly1|930379|scaffold_302836.1
Length=1744
Score = 1240 bits (671), Expect = 0.0
Identities = 1139/1358 (84%), Gaps = 60/1358 (4%)
Strand=Plus/Plus
Query 223 TAATGGAGCAGCTTGTTAACTTCGTCATTCGACCTCCAAGAGCTGAATACAATC-CAGAA 281
||||||| ||||||||||||||| |||||||||||||||||||||| || | | | |||
Sbjct 23 TAATGGAACAGCTTGTTAACTTCATCATTCGACCTCCAAGAGCTGAGTATGA-CGCGGAA 81
Query 282 CATGATCTCTTGGAACAA-GAGTTCT-TGCTTAAAGGGAGATGGTACCAGAGGAAA-GAT 338
||||||||||||||| || ||||| | || | ||||| |||||||| |||| |||| |||
Sbjct 82 CATGATCTCTTGGAA-AAGGAGTT-TATGATGAAAGGTAGATGGTATCAGA-GAAAGGAT 138
Query 339 TTAGAGGTTAAAAACA-TCAGAGGAGATATCCTTCAGTGTAGTCATTACATGCCAGTTGA 397
|||||||||||||||| | ||||||||| | || |||||||||||||| |||||||||||
Sbjct 139 TTAGAGGTTAAAAACAGT-AGAGGAGATGTTCTCCAGTGTAGTCATTATATGCCAGTTGA 197
Query 398 GCGTCCTGAA-GATAGGCCTCTACCTTGTGTAATATACTGCCATGGCAACAGTGGATGTA 456
|| |||||| || | |||| |||| ||||||||||||||||| || |||||||||||||
Sbjct 198 ACGCCCTGAAGGA-AAGCCTTTACCCTGTGTAATATACTGCCACGGAAACAGTGGATGTA 256
Query 457 GAGCTGATGCCAGTGAAGCTGCGATCGTATTACTTCCTTCAAACATCACGA-TTTTCACG 515
|||| |||| |||||||| || || || || || |||||||||||||| | |||||||
Sbjct 257 GAGCGGATGGTAGTGAAGCCGCAATTGTGTTGCTGCCTTCAAACATCAC-AGTTTTCACC 315
Query 516 CTTGACTTTTCGGGATCCGGTCTCTCTGGCGGGGAGCATGTCACTTTGGGTTGGAACGAA 575
||||||||||||||||| |||||||| |||||||| ||||||| || || |||||||||
Sbjct 316 CTTGACTTTTCGGGATCGGGTCTCTCAGGCGGGGAATATGTCACCTTAGGCTGGAACGAA 375
Query 576 AAAGATGATCTGAAGGCTGTGGTTGAGTATTTGC-GCACGGATGGGAATGTCTCCCTGAT 634
|| |||||||||||||||||||| |||| ||||| ||| |||||| ||| | ||||| ||
Sbjct 376 AAGGATGATCTGAAGGCTGTGGTCGAGTTTTTGCGGCA-GGATGGAAATATATCCCTAAT 434
Query 635 TGGCTTATGGGGTCGTTCAATGGGTGCTGTCACAAGCTTGATGTACGGAGCAGAGGATCC 694
||| |||||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct 435 TGGGTTATGGGGGCGTTCAATGGGTGCTGTTACTAGCTTGATGTATGGAGCCGAGGATCC 494
Query 695 CTCTATCGCAGCG-ATGGTTCTAGACAGCCCATTCTCTGATTTGGTTGATTTGATGATGG 753
|| || |||| | ||| ||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 495 TTCGATTGCAG-GAATGATTCTAGACAGCCCCTTCTCCGATTTGGTTGATCTGATGATGG 553
Query 754 AGCTTGTAGATACGTATAAGTTCCGACTACCGAAGTTTACTATAAAATTTGCAATACAAT 813
| ||||| ||||| |||||||| || ||||| ||||||||| | |||||||||||||| |
Sbjct 554 AACTTGTTGATACATATAAGTTTCGTCTACCCAAGTTTACTGTGAAATTTGCAATACAGT 613
Query 814 AT-ATGCGGAGAGCTGTTCAGAAGAAAGCCAATTTTAACATAACGGATCTCAACACCATT 872
| |||||||||||| ||| ||| ||||| || ||| |||||| || ||| |||||||||
Sbjct 614 -TCATGCGGAGAGCTATTCTGAAAAAAGCAAAGTTTGACATAATGGCTCTGAACACCATT 672
Query 873 AAGGTAGCGAAATCTTGTTTTGTTCCTGTTTTATTTGGACATGCCGTAGATGATGACTTT 932
||||| ||||| ||| |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 673 AAGGTGGCGAAGTCTAGTTTTGTTCCAGTTTTATTTGGACATGCCTTAGATGATGACTTT 732
Query 933 ATTCAG-CCTCATCACTCAGAGCGTATATATGAAGCATACATAGGAGACAAAAATATCAT 991
| || | |||||||| ||||| |||||||||||||| ||| |||| ||||||||||||||
Sbjct 733 A-TCCGCCCTCATCATTCAGATCGTATATATGAAGCTTACGTAGGTGACAAAAATATCAT 791
Query 992 CAA-ATT-CGATGGAGACCACAATTCACCACGGCCACAATTCTACTTTGATTCAATAAAC 1049
||| || || ||||||||||| || ||| |||| | |||||| |||||||| || ||
Sbjct 792 CAAGTTTCCG--GGAGACCACAACTCCCCAAGGCCTCCATTCTATTTTGATTCGATCAAT 849
Query 1050 ATCTTTTTCCATAACGTTCTTCAACCTCCAGAGGTGGTTGGGCCAACATTTTTTGACCCG 1109
||||||||||| |||||||||||||| ||||||||||| ||||| ||||||| ||||||
Sbjct 850 ATCTTTTTCCACAACGTTCTTCAACCCCCAGAGGTGGTGGGGCCGACATTTTATGACCCA 909
Query 1110 GTGGATGACTACTTTGCTAAGGGCAGTTGGAGCACCATGCA--ACAACTAAGT-TCTCCC 1166
||||||| |||||||| || ||||||||| |||| ||||| || || || | | |||
Sbjct 910 TTGGATGATTACTTTGCAAATGGCAGTTGGGGCACTATGCATGAC-AC-AAATAT-TCCA 966
Query 1167 CCATCCTCAGCACAGAAAAGTTTAGCTC-CAGGTAGCACCTCTGATGCTATAAATGAAGT 1225
| |||||||| ||||||||||||||| | | ||||||| |||||| || || ||||||||
Sbjct 967 CAATCCTCAGTACAGAAAAGTTTAGC-CGCGGGTAGCATCTCTGAGGCAATTAATGAAGT 1025
Query 1226 CCGCTTAA-AAA-GACCTATGAGTCGCACAGAGGTTCCTTCCAACGACCCATCTAATC-A 1282
|||| || ||| |||| |||||||||||||| |||||||| || | | ||||||| |
Sbjct 1026 CCGC--AAGAAACGACCCATGAGTCGCACAGATGTTCCTTCAAATGTCACATCTAA-CGG 1082
Query 1283 ATCGT-CATCAGAAACCAAGGAAAAAGAGAGTCTTGAAGTCTC-CAGTAGTTCATC-T-T 1338
|| | |||||||| | ||||||||||| | || ||| | | | | |||||||| | |
Sbjct 1083 TTC-TCCATCAGAATCTAAGGAAAAAGAAAATCCTGATGGC-CGTGGCAGTTCATCTTCT 1140
Query 1339 -CTGATATGATCAGTTTTGATTTGTCGAAT-GG-AGATCCATATCCTCCTCATC-TCGCA 1394
|||||||||| || ||||||||||| ||| || | ||| | | |||||||| | | | |
Sbjct 1141 CCTGATATGATAAGCTTTGATTTGTC-AATCGGCA-ATCAACACCCTCCTCACCTTAGGA 1198
Query 1395 GTAGCTTTAGATGATGATCAATATGTGGAGTTTCACG-TAGATGAGC-TGGCAGATTTTC 1452
| |||||||||||||||||||||||||||| ||| | | || || | ||||||||||||
Sbjct 1199 -TGGCTTTAGATGATGATCAATATGTGGAGTATCA-GATGGAGGA-CATGGCAGATTTTC 1255
Query 1453 CATCAAATGCAGAGGAAGAAGAGAGGATGCTGATGGAAGCGGTGATGAAATCGCTGAAGG 1512
|||| ||||||||||||||||| |||||||| ||| ||||||||||| ||||| |||| |
Sbjct 1256 CATCTAATGCAGAGGAAGAAGAAAGGATGCTTATGAAAGCGGTGATGGAATCGTTGAAAG 1315
Query 1513 ACATGGAGGTTGAACAAACTCATCAGAAAAAAGAACCT 1550
|| |||| || | |||| ||| |||||||||||||||
Sbjct 1316 ACTTGGAAGT-G--CAAAGTCAACAGAAAAAAGAACCT 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73933165545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5