BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14290.1 Length=1967 Score E Sequences producing significant alignments: (Bits) Value Ahg890926 jgi|Araly1|890926|Al_scaffold_0007_2912 2573 0.0 Ahg930379 jgi|Araly1|930379|scaffold_302836.1 1240 0.0 > Ahg890926 jgi|Araly1|890926|Al_scaffold_0007_2912 Length=1674 Score = 2573 bits (1393), Expect = 0.0 Identities = 1583/1677 (94%), Gaps = 3/1677 (0%) Strand=Plus/Plus Query 225 ATGGAGCAGCTTGTTAACTTCGTCATTCGACCTCCAAGAGCTGAATACAATCCAGAACAT 284 ||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||| Sbjct 1 ATGGAGCAGCTTGTTAACTTCATTATTCGACCTCCAAGAGCTGAATACAATCCGGAACAT 60 Query 285 GATCTCTTGGAACAAGAGTTCTTGCTTAAAGGGAGATGGTACCAGAGGAAAGATTTAGAG 344 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 61 GATCTCTTGGAACAAGAGTTCTTGCTTAAAGGAAGATGGTATCAGAGGAAAGATTTAGAG 120 Query 345 GTTAAAAACATCAGAGGAGATATCCTTCAGTGTAGTCATTACATGCCAGTTGAGCGTCCT 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTTAAAAACATCAGAGGAGATATCCTTCAGTGTAGTCATTACATGCCAGTTGAGCGTCCT 180 Query 405 GAAGATAGGCCTCTACCTTGTGTAATATACTGCCATGGCAACAGTGGATGTAGAGCTGAT 464 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 GAAGATAGGCCTCTACCTTGTGTAATATACTGCCATGGAAACAGTGGATGTAGAGCTGAT 240 Query 465 GCCAGTGAAGCTGCGATCGTATTACTTCCTTCAAACATCACGATTTTCACGCTTGACTTT 524 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 241 GCCAGTGAAGCTGCGATCGTATTACTTCCTTCAAACATCACGATTTTCACCCTTGACTTT 300 Query 525 TCGGGATCCGGTCTCTCTGGCGGGGAGCATGTCACTTTGGGTTGGAACGAAAAAGATGAT 584 |||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 301 TCGGGATCTGGTCTCTCTGGCGGGGAGTATGTCACATTGGGTTGGAACGAAAAAGATGAT 360 Query 585 CTGAAGGCTGTGGTTGAGTATTTGCGCACGGATGGGAATGTCTCCCTGATTGGCTTATGG 644 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 361 CTGAAAGCTGTGGTTGAGTATTTGCGCACGGATGGAAATGTCTCCCTGATTGGCTTATGG 420 Query 645 GGTCGTTCAATGGGTGCTGTCACAAGCTTGATGTACGGAGCAGAGGATCCCTCTATCGCA 704 |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||| Sbjct 421 GGTCGTTCAATGGGTGCTGTCACAAGTTTGATGTATGGAGCTGAGGATCCCTCTATTGCA 480 Query 705 GCGATGGTTCTAGACAGCCCATTCTCTGATTTGGTTGATTTGATGATGGAGCTTGTAGAT 764 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 481 GCGATGGTTCTAGACAGCCCGTTCTCTGATTTGGTTGATTTGATGATGGAACTTGTAGAT 540 Query 765 ACGTATAAGTTCCGACTACCGAAGTTTACTATAAAATTTGCAATACAATATATGCGGAGA 824 || ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 541 ACATATAAGTTCCGGTTACCAAAGTTTACTATAAAATTTGCAATACAATATATGCGGAGA 600 Query 825 GCTGTTCAGAAGAAAGCCAATTTTAACATAACGGATCTCAACACCATTAAGGTAGCGAAA 884 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GCTGTTCAGAAGAAAGCCAATTTTAACATAACGGATCTCAACACCATTAAGGTAGCGAAA 660 Query 885 TCTTGTTTTGTTCCTGTTTTATTTGGACATGCCGTAGATGATGACTTTATTCAGCCTCAT 944 ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 661 TCTTGCTTTGTTCCTGTTTTATTTGGACATGCCATAGACGATGACTTTATTCAGCCTCAT 720 Query 945 CACTCAGAGCGTATATATGAAGCATACATAGGAGACAAAAATATCATCAAATTCGATGGA 1004 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 721 CACTCAGAGCGTATATATGAAGCATACATAGGAGACAAAAATATCATCAAATTCGAGGGA 780 Query 1005 GACCACAATTCACCACGGCCACAATTCTACTTTGATTCAATAAACATCTTTTTCCATAAC 1064 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 781 GACCACAATTCACCACGGCCACCATTCTACTTTGATTCAATAAACATCTTTTTCCATAAT 840 Query 1065 GTTCTTCAACCTCCAGAGGTGGTTGGGCCAACATTTTTTGACCCGGTGGATGACTACTTT 1124 |||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| Sbjct 841 GTTCTTCAACCTCCGGAGGTGGTCAAGCCAACATTTTTTGACCCGGTGGATGATTACTTT 900 Query 1125 GCTAAGGGCAGTTGGAGCACCATGCAACAACTAAGTTCTCCCCCATCCTCAGCACAGAAA 1184 | ||||||||||||| |||||| ||| ||||||||||||| | |||||||||||||||| Sbjct 901 TCCAAGGGCAGTTGGAACACCATTCAAGAACTAAGTTCTCCACAATCCTCAGCACAGAAA 960 Query 1185 AGTTTAGCTCCAGGTAGCACCTCTGATGCTATAAATGAAGTCCGCTTAAAAAGACCTATG 1244 ||||||| | |||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 961 AGTTTAGTTGCAGGAAGCACCTCCGATGCTATAAATGAAGTCCGCTTAAAAAGACCTATG 1020 Query 1245 AGTCGCACAGAGGTTCCTTCCAACGACCCATCTAATCAATCGTCATCAGAAACCAAGGAA 1304 ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct 1021 AGTCGCACAGAGGTTCCTTCCAATGACCCATCTAACCAATCATCATCAGAAACCAAGGAA 1080 Query 1305 AAAGAGAGTCTTGAAGTCTCCAGTAGTTCATCTTCTGATATGATCAGTTTTGATTTGTCG 1364 ||||||| | |||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1081 AAAGAGAATAATGAAGTCTCCAGTAGTTCATCTTCTGATATGATCAGCTTCGATTTGTCG 1140 Query 1365 AATGGAGATCCATATCCTCCTCATCTCGCAGTAGCTTTAGATGATGATCAATATGTGGAG 1424 |||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||| Sbjct 1141 AATGGAGATCCATATCCTCCTCATCTTGCGGTAGCTTTAGATGATGATCAGTTTGTGGAG 1200 Query 1425 TTTCACGTAGATGAGCTGGCAGATTTTCCATCAAATGCAGAGGAAGAAGAGAGGATGCTG 1484 ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| || Sbjct 1201 TTTCACGTAGATGAGCTGGCAGACTTTCCATCTAATGCAGAGGAAGAAGAGAGGATGTTG 1260 Query 1485 ATGGAAGCGGTGATGAAATCGCTGAAGGACATGGAGGTTGAACAAACTCATCAGAAAAAA 1544 |||||||||||||||||||| ||||||||||||||||||||| | |||||||||| ||| Sbjct 1261 ATGGAAGCGGTGATGAAATCACTGAAGGACATGGAGGTTGAA-A--CTCATCAGAACAAA 1317 Query 1545 GAACCTTCCAGGACCAATACAGAGACCAGTGAAGGTAATGCTGCTGCTTCTACTACAGAA 1604 ||||| |||| ||||||||||||| || |||||||||||||||| |||||||||||||| Sbjct 1318 GAACCCTCCAACACCAATACAGAGAACACTGAAGGTAATGCTGCTTCTTCTACTACAGAA 1377 Query 1605 CCAGAACTGGCACTTTCTGATACAGATTCTGCTTCTGGTCCAACACCATGTAACCATGAT 1664 | |||| |||||| |||||| |||| | ||||| |||||||||||||||||||||||| | Sbjct 1378 CAAGAATTGGCACATTCTGAGACAGCTCCTGCTCCTGGTCCAACACCATGTAACCATGGT 1437 Query 1665 GCACGATTATCTTCTGTAGCCAGTGTTCCATCTAAAACATCAGATTCTCTGCCGGGACCT 1724 || |||| |||||||| |||||||||||||| ||||||||||||||||||||| |||||| Sbjct 1438 GCGCGATCATCTTCTGAAGCCAGTGTTCCATTTAAAACATCAGATTCTCTGCCAGGACCT 1497 Query 1725 GTAAATGGTTTTGTTCCTGGTGCTTCGCCTAAAACGAGTCAAAACAAAAATGATGTCATT 1784 |||||||||||||||||||||||||| || ||||||||||| |||||||| || |||||| Sbjct 1498 GTAAATGGTTTTGTTCCTGGTGCTTCACCCAAAACGAGTCAGAACAAAAACGACGTCATT 1557 Query 1785 GATTTGTCAGCACGTACAAAGGCAACAGTGACTGTGGTTGGACGTAGTAGCACATCAGGA 1844 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1558 GATTTATCAGCTCGTACAAAGGCAACAGTGACTGTGGTTGGACGTAGTAGCACATCAGGA 1617 Query 1845 AACGTTTTAGAGGGGTTATTACGCCGATGGGATCTTAATTTCTTCAAAAGTAGATAA 1901 ||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||| Sbjct 1618 AACGTTTTAGATGGGTTATTACGTCGATGGGATCTTAACTTCTTCAAAGGTAGATAA 1674 > Ahg930379 jgi|Araly1|930379|scaffold_302836.1 Length=1744 Score = 1240 bits (671), Expect = 0.0 Identities = 1139/1358 (84%), Gaps = 60/1358 (4%) Strand=Plus/Plus Query 223 TAATGGAGCAGCTTGTTAACTTCGTCATTCGACCTCCAAGAGCTGAATACAATC-CAGAA 281 ||||||| ||||||||||||||| |||||||||||||||||||||| || | | | ||| Sbjct 23 TAATGGAACAGCTTGTTAACTTCATCATTCGACCTCCAAGAGCTGAGTATGA-CGCGGAA 81 Query 282 CATGATCTCTTGGAACAA-GAGTTCT-TGCTTAAAGGGAGATGGTACCAGAGGAAA-GAT 338 ||||||||||||||| || ||||| | || | ||||| |||||||| |||| |||| ||| Sbjct 82 CATGATCTCTTGGAA-AAGGAGTT-TATGATGAAAGGTAGATGGTATCAGA-GAAAGGAT 138 Query 339 TTAGAGGTTAAAAACA-TCAGAGGAGATATCCTTCAGTGTAGTCATTACATGCCAGTTGA 397 |||||||||||||||| | ||||||||| | || |||||||||||||| ||||||||||| Sbjct 139 TTAGAGGTTAAAAACAGT-AGAGGAGATGTTCTCCAGTGTAGTCATTATATGCCAGTTGA 197 Query 398 GCGTCCTGAA-GATAGGCCTCTACCTTGTGTAATATACTGCCATGGCAACAGTGGATGTA 456 || |||||| || | |||| |||| ||||||||||||||||| || ||||||||||||| Sbjct 198 ACGCCCTGAAGGA-AAGCCTTTACCCTGTGTAATATACTGCCACGGAAACAGTGGATGTA 256 Query 457 GAGCTGATGCCAGTGAAGCTGCGATCGTATTACTTCCTTCAAACATCACGA-TTTTCACG 515 |||| |||| |||||||| || || || || || |||||||||||||| | ||||||| Sbjct 257 GAGCGGATGGTAGTGAAGCCGCAATTGTGTTGCTGCCTTCAAACATCAC-AGTTTTCACC 315 Query 516 CTTGACTTTTCGGGATCCGGTCTCTCTGGCGGGGAGCATGTCACTTTGGGTTGGAACGAA 575 ||||||||||||||||| |||||||| |||||||| ||||||| || || ||||||||| Sbjct 316 CTTGACTTTTCGGGATCGGGTCTCTCAGGCGGGGAATATGTCACCTTAGGCTGGAACGAA 375 Query 576 AAAGATGATCTGAAGGCTGTGGTTGAGTATTTGC-GCACGGATGGGAATGTCTCCCTGAT 634 || |||||||||||||||||||| |||| ||||| ||| |||||| ||| | ||||| || Sbjct 376 AAGGATGATCTGAAGGCTGTGGTCGAGTTTTTGCGGCA-GGATGGAAATATATCCCTAAT 434 Query 635 TGGCTTATGGGGTCGTTCAATGGGTGCTGTCACAAGCTTGATGTACGGAGCAGAGGATCC 694 ||| |||||||| ||||||||||||||||| || ||||||||||| ||||| |||||||| Sbjct 435 TGGGTTATGGGGGCGTTCAATGGGTGCTGTTACTAGCTTGATGTATGGAGCCGAGGATCC 494 Query 695 CTCTATCGCAGCG-ATGGTTCTAGACAGCCCATTCTCTGATTTGGTTGATTTGATGATGG 753 || || |||| | ||| ||||||||||||| ||||| |||||||||||| ||||||||| Sbjct 495 TTCGATTGCAG-GAATGATTCTAGACAGCCCCTTCTCCGATTTGGTTGATCTGATGATGG 553 Query 754 AGCTTGTAGATACGTATAAGTTCCGACTACCGAAGTTTACTATAAAATTTGCAATACAAT 813 | ||||| ||||| |||||||| || ||||| ||||||||| | |||||||||||||| | Sbjct 554 AACTTGTTGATACATATAAGTTTCGTCTACCCAAGTTTACTGTGAAATTTGCAATACAGT 613 Query 814 AT-ATGCGGAGAGCTGTTCAGAAGAAAGCCAATTTTAACATAACGGATCTCAACACCATT 872 | |||||||||||| ||| ||| ||||| || ||| |||||| || ||| ||||||||| Sbjct 614 -TCATGCGGAGAGCTATTCTGAAAAAAGCAAAGTTTGACATAATGGCTCTGAACACCATT 672 Query 873 AAGGTAGCGAAATCTTGTTTTGTTCCTGTTTTATTTGGACATGCCGTAGATGATGACTTT 932 ||||| ||||| ||| |||||||||| |||||||||||||||||| |||||||||||||| Sbjct 673 AAGGTGGCGAAGTCTAGTTTTGTTCCAGTTTTATTTGGACATGCCTTAGATGATGACTTT 732 Query 933 ATTCAG-CCTCATCACTCAGAGCGTATATATGAAGCATACATAGGAGACAAAAATATCAT 991 | || | |||||||| ||||| |||||||||||||| ||| |||| |||||||||||||| Sbjct 733 A-TCCGCCCTCATCATTCAGATCGTATATATGAAGCTTACGTAGGTGACAAAAATATCAT 791 Query 992 CAA-ATT-CGATGGAGACCACAATTCACCACGGCCACAATTCTACTTTGATTCAATAAAC 1049 ||| || || ||||||||||| || ||| |||| | |||||| |||||||| || || Sbjct 792 CAAGTTTCCG--GGAGACCACAACTCCCCAAGGCCTCCATTCTATTTTGATTCGATCAAT 849 Query 1050 ATCTTTTTCCATAACGTTCTTCAACCTCCAGAGGTGGTTGGGCCAACATTTTTTGACCCG 1109 ||||||||||| |||||||||||||| ||||||||||| ||||| ||||||| |||||| Sbjct 850 ATCTTTTTCCACAACGTTCTTCAACCCCCAGAGGTGGTGGGGCCGACATTTTATGACCCA 909 Query 1110 GTGGATGACTACTTTGCTAAGGGCAGTTGGAGCACCATGCA--ACAACTAAGT-TCTCCC 1166 ||||||| |||||||| || ||||||||| |||| ||||| || || || | | ||| Sbjct 910 TTGGATGATTACTTTGCAAATGGCAGTTGGGGCACTATGCATGAC-AC-AAATAT-TCCA 966 Query 1167 CCATCCTCAGCACAGAAAAGTTTAGCTC-CAGGTAGCACCTCTGATGCTATAAATGAAGT 1225 | |||||||| ||||||||||||||| | | ||||||| |||||| || || |||||||| Sbjct 967 CAATCCTCAGTACAGAAAAGTTTAGC-CGCGGGTAGCATCTCTGAGGCAATTAATGAAGT 1025 Query 1226 CCGCTTAA-AAA-GACCTATGAGTCGCACAGAGGTTCCTTCCAACGACCCATCTAATC-A 1282 |||| || ||| |||| |||||||||||||| |||||||| || | | ||||||| | Sbjct 1026 CCGC--AAGAAACGACCCATGAGTCGCACAGATGTTCCTTCAAATGTCACATCTAA-CGG 1082 Query 1283 ATCGT-CATCAGAAACCAAGGAAAAAGAGAGTCTTGAAGTCTC-CAGTAGTTCATC-T-T 1338 || | |||||||| | ||||||||||| | || ||| | | | | |||||||| | | Sbjct 1083 TTC-TCCATCAGAATCTAAGGAAAAAGAAAATCCTGATGGC-CGTGGCAGTTCATCTTCT 1140 Query 1339 -CTGATATGATCAGTTTTGATTTGTCGAAT-GG-AGATCCATATCCTCCTCATC-TCGCA 1394 |||||||||| || ||||||||||| ||| || | ||| | | |||||||| | | | | Sbjct 1141 CCTGATATGATAAGCTTTGATTTGTC-AATCGGCA-ATCAACACCCTCCTCACCTTAGGA 1198 Query 1395 GTAGCTTTAGATGATGATCAATATGTGGAGTTTCACG-TAGATGAGC-TGGCAGATTTTC 1452 | |||||||||||||||||||||||||||| ||| | | || || | |||||||||||| Sbjct 1199 -TGGCTTTAGATGATGATCAATATGTGGAGTATCA-GATGGAGGA-CATGGCAGATTTTC 1255 Query 1453 CATCAAATGCAGAGGAAGAAGAGAGGATGCTGATGGAAGCGGTGATGAAATCGCTGAAGG 1512 |||| ||||||||||||||||| |||||||| ||| ||||||||||| ||||| |||| | Sbjct 1256 CATCTAATGCAGAGGAAGAAGAAAGGATGCTTATGAAAGCGGTGATGGAATCGTTGAAAG 1315 Query 1513 ACATGGAGGTTGAACAAACTCATCAGAAAAAAGAACCT 1550 || |||| || | |||| ||| ||||||||||||||| Sbjct 1316 ACTTGGAAGT-G--CAAAGTCAACAGAAAAAAGAACCT 1350 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73933165545 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5