BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14301.1
Length=399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493479 jgi|Araly1|493479|fgenesh2_kg.7__2912__AT4G14301.1 394 3e-109
> Ahg493479 jgi|Araly1|493479|fgenesh2_kg.7__2912__AT4G14301.1
Length=426
Score = 394 bits (213), Expect = 3e-109
Identities = 353/413 (85%), Gaps = 40/413 (10%)
Strand=Plus/Plus
Query 1 ATGGGGAGTCTCGTTGTTAACGGAGCTGCTCTCTTGGCTTTGTTGTGGTTCAATGTTTTT 60
|||||| ||||| || |||||||||||||||||||||||||| |||||| | | |
Sbjct 40 ATGGGGCGTCTC---GTAAACGGAGCTGCTCTCTTGGCTTTGTTATGGTTC-A-G----T 90
Query 61 GTGGTGAATTATGTGGCTGCAAGAGAAGGTGTGACCTTTGGAAAAGATGAAGAGGAGAAG 120
|| | || ||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 91 GT--T---TT-TGTGGCTGCGAGAGAAGGTGTGACCTTTGGAAAAAATGAAGAGGAGAAG 144
Query 121 ACCATCATAGGCGGAGGAAAGGGCTTTGGAGG-TGCCATTGGTAAAGGTGGA---GGC-- 174
||| |||||||||| ||||||||||||||||| | | ||||| |||||| |||
Sbjct 145 ACCTTCATAGGCGGTGGAAAGGGCTTTGGAGGCGGTC-TTGGT---GGTGGATTTGGCAA 200
Query 175 A--TTTTCGG---C-CA--CGGAATAGGCAAAGGCGGTGGTTTTGGAGGTGGCATTAGTA 226
| | || | || ||| |||||||||||||||||||||||||||||| | |
Sbjct 201 AGGAGGT-GGAATCGCAGGCGGGATAGGCAAAGGCGGTGGTTTTGGAGGTGGC---A-T- 254
Query 227 AAGGTGGAGGCTTTGGTGGTGGAATCGGCAAAGGTGGTGGGATTGGAGGCGGCATTGGAA 286
||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||
Sbjct 255 -AGGTGGAGGCTTTGGCGGGGGAATCGGCAAAGGTGGTGGGATTGGAGGCGGCTTTGGAA 313
Query 287 AAGGTAAAGGATGGGGCTTTGGCGGCGGAATAGGCAAAGGTGGTGGTATTGGAGGCGGCA 346
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 314 AAGGTAAAGGATGGGGCTTTGGCGGCGGAATAGGCAAAGGTGGTGGGATTGGAGGCGGCA 373
Query 347 TTGGAAAAGGTAAAGGATGGGGCTTTGGTGTTGGCTGGTTTGGACACCACTGA 399
|||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 374 CTGGAAAAGGTAAAGGATGGGCCTTTGGTGGTGGCTGGTTTGGACACCACTGA 426
Score = 130 bits (70), Expect = 8e-30
Identities = 126/151 (83%), Gaps = 11/151 (7%)
Strand=Plus/Plus
Query 165 AGGTGGAGGCATTTTCGGCCACGGAATAGGCAAAGGCGGTGGTTTTGGAGGTGGCATT-- 222
|||||||||| ||| ||| ||||| |||||||| ||||| ||||||| ||| ||
Sbjct 255 AGGTGGAGGC--TTT-GGCGGGGGAATCGGCAAAGGTGGTGGGATTGGAGGCGGCTTTGG 311
Query 223 ---A-GTAAAGG-TGGAGGCTTTGGTGGTGGAATCGGCAAAGGTGGTGGGATTGGAGGCG 277
| ||||||| ||| |||||||| || ||||| |||||||||||||||||||||||||
Sbjct 312 AAAAGGTAAAGGATGG-GGCTTTGGCGGCGGAATAGGCAAAGGTGGTGGGATTGGAGGCG 370
Query 278 GCATTGGAAAAGGTAAAGGATGGGGCTTTGG 308
||| |||||||||||||||||||| ||||||
Sbjct 371 GCACTGGAAAAGGTAAAGGATGGGCCTTTGG 401
Score = 117 bits (63), Expect = 6e-26
Identities = 76/82 (93%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 294 AGGATGG-GGCTTTGGCGGCGGAATAGGCAAAGGTGGTGGTATTGGAGGCGGCATTGGAA 352
||| ||| ||||||||||| ||||| |||||||||||||| |||||||||||| ||||||
Sbjct 255 AGG-TGGAGGCTTTGGCGGGGGAATCGGCAAAGGTGGTGGGATTGGAGGCGGCTTTGGAA 313
Query 353 AAGGTAAAGGATGGGGCTTTGG 374
||||||||||||||||||||||
Sbjct 314 AAGGTAAAGGATGGGGCTTTGG 335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14308345875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5