BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14305.1
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890923 jgi|Araly1|890923|Al_scaffold_0007_2909 881 0.0
> Ahg890923 jgi|Araly1|890923|Al_scaffold_0007_2909
Length=558
Score = 881 bits (477), Expect = 0.0
Identities = 531/558 (95%), Gaps = 0/558 (0%)
Strand=Plus/Plus
Query 111 ATGTCGGATCTTGCTAAAGACGCATGGCGAAAGTATCTGATTCAGCTTCAAGCTCATCCT 170
|||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||| |||
Sbjct 1 ATGTCGGATCTTGCGAAAGACGCATGGCGAAAATATTTGATTCAGCTCCAAGCTCACCCT 60
Query 171 TTACGAACCAAGGCGATCACTGCAGGGGTTTTAGCTGGATGTAGTGATGCTATAGCTCAG 230
||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||
Sbjct 61 TTACGAACCAAGGCGATCACTGCAGGGGTTTTAACAGGGTGCAGTGATGCTATAGCTCAG 120
Query 231 AAGATCTCTGGAGTTAAACGGATTCAGTTCCGGAGATTGCTTCTCCTTATGTTGTATGGC 290
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 AAGATCTCTGGAGTTAAACGGATTCAGTTCCGGAGATTGCTTCTCCTTATGTTATATGGG 180
Query 291 TTTGCTTATGGAGGACCATTTGGTCACTTTTTCCACAAATTGATGGATACCATTTTCAAA 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTGCTTATGGAGGACCATTTGGTCACTTTTTCCACAAATTGATGGATACCATTTTCAAA 240
Query 351 GGGAAGAAGGGTAATTCAACTGTTGCCAAAAAGGTTTTGTTGGAGCAACTTACATCATCT 410
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 GGGAAGAAGGGTAATTCAACTGTTGCCAAAAAGGTTTTGTTGGAACAACTTACATCATCT 300
Query 411 CCTTGGAACAATTTTCTTTTCATGTCTTACTATGGTTTAGTAGTTGAAGGAAGGCCATGG 470
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CCTTGGAACAATTTTCTTTTCATGTCTTACTATGGTTTAGTAGTTGAAGGGAGGCCATGG 360
Query 471 AAGCTAGTGAAGCACAAACTTGGAAAAGATTACCCTACTATCCAGTTAACCGCATGGAAG 530
|||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||
Sbjct 361 AAGCTAGTGAAGCACAAAGTTGGGAAAGATTACCCTACGATCCAGTTAACAGCATGGAAG 420
Query 531 TTCTGGCCTATCGTGGGATGGGTTAATTATCAGTATGTGCCTCTCCAATTCCGTGTTTTG 590
||||||||||| |||||||||||||||||||||||||| ||| | |||||||| || |||
Sbjct 421 TTCTGGCCTATTGTGGGATGGGTTAATTATCAGTATGTCCCTTTGCAATTCCGCGTCTTG 480
Query 591 TTCAGCAGCTTCGTCGCCTCTTGCTGGAGCATATTTCTGAACTTGAAAGCGCGATCTCCG 650
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 TTCAGTAGCTTCGTCGCCTCTTGCTGGAGCATATTTCTGAACCTGAAAGCGCGATCTCCG 540
Query 651 GTGATCAAAAACGCGTAG 668
| |||||||||||| |||
Sbjct 541 GCGATCAAAAACGCATAG 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33738781545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5