BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14310.2
Length=3058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493476 jgi|Araly1|493476|fgenesh2_kg.7__2909__AT4G14310.1 2324 0.0
> Ahg493476 jgi|Araly1|493476|fgenesh2_kg.7__2909__AT4G14310.1
Length=2898
Score = 2324 bits (1258), Expect = 0.0
Identities = 1443/1532 (94%), Gaps = 13/1532 (1%)
Strand=Plus/Plus
Query 1 ATGTCAGCTTCAACGAATCGCCGCCGGCTAAAAGATATAAACACCGGCGCCGGTGAAAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1 ATGTCAGCTTCAACGAATCGCCGCCGGCTAAAAGATATAAACACCGGCGCCGGAGGAAAT 60
Query 61 CCATCATCTGGTAAAAAACCATTGAGGTCTGTAACTCCACTTCCGATCTCAAGCAAAAAT 120
| ||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 61 CTATCTTCTGGTAAAAAACCATCAAGGTCTGTGACTCCACTTCCGATCTCAAGCAAAAAT 120
Query 121 TCAAATCCCGCTCTTCAGAAATCATTATCCAGCAAAGAGAATCCGAATCCGAAGCTTAGT 180
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CCAAGTCCCGCTCTTCAGAAATCATTATCCAGCAAAGAGAATCCAAATCCGAAGCTTAGT 180
Query 181 CACCGCTCATTTGGATCGACTCAGAAGCCAGTGCTCCGGCCTGTACCGCGCATTGATAAG 240
||||| |||||||||||||| |||||||||||||| || ||||| ||||| || ||||||
Sbjct 181 CACCGGTCATTTGGATCGACACAGAAGCCAGTGCTTCGTCCTGTTCCGCGAATCGATAAG 240
Query 241 TCCGCCGTGAGTGGCGAGGGTCGGGTTACGCGATCCACGTCATCTGGTTTGCGAGGTAGG 300
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 241 TCCGCCGTGAGAGGCGAGGGTCGAGTTACGCGATCCACGTCTTCTGGTTTGCGAGGTAGG 300
Query 301 AGTTCTAGTCCATCTGATTTGATTAGGGTTTTCTCGGATTTGAGAAAGAGAAATGAATCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTTCTAGTCCATCTGATTTGATTAGGGTTTTCTCGGATTTGAGAAAGAGAAATGAATCT 360
Query 361 AGGGTTATTGGGGAAAAGGGTGAATCGGGTCAGGATAAGAAGTCTGGGCTCAAGAGTTCT 420
||||||||||||||||||||||||| || |||||||||||| |||||| |||||||||||
Sbjct 361 AGGGTTATTGGGGAAAAGGGTGAATTGGATCAGGATAAGAAATCTGGGTTCAAGAGTTCT 420
Query 421 GGATTCAAACAGGGTACGAGTGAAATTAAGGTTGAGCCAAGTAGTGTTTGTGAGAAAGCA 480
||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| ||
Sbjct 421 GGATTCAAACAGGTTACGAGTGAAATTAAGGTTGAGACAAGTAGGGTTTGTGAGAAAACA 480
Query 481 GATGAAGGAAGTAGTTGT-CCAGTGAATTCAAGCAAATTTGAAGGTTCTAGTGTGGCGAG 539
||||||| ||||| |||| |||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 481 GATGAAGAAAGTA-TTGTTCCAGTGAAATCAAGCAAATTTGAAGGTTCTAGCGTGGCCAG 539
Query 540 AAATTCAATTTCTGATCCAAAGGCACATGCTTTAGTTGGTTCTGGAGAGAAATCTACTGT 599
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||
Sbjct 540 AAATTCAATTTCTGATCCAAAGGAACATGCTTTGGTTGGTTCTGGAGAGAAATCTGCTGT 599
Query 600 TGCTTTGAAATCTGATAGTAAGATTGAAAAGACTGGGAAAGGGACTAGTGTAGCTTTAAG 659
|| ||||||||||||| |||| |||||||||| ||||||||| |||||||||| ||||||
Sbjct 600 TGTTTTGAAATCTGATTGTAAAATTGAAAAGATTGGGAAAGGTACTAGTGTAGGTTTAAG 659
Query 660 AAGGAAGTCTTTGGATAATGTTGGGAAGGCAATGGAGATGTCAAAGGATATAAGAGGAAA 719
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 660 AAGGAAGTCTTTGGATAATGTTGGGAAGGCAATGGAGATGTCAAAGGAGATTAGAGGGAA 719
Query 720 TGAAGGAAGCAGCAATAGTACTGCTAAGTATCCAAGCAAGCTGCACGAGAAGCTTGCTTT 779
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 720 TGAAGGAAGCAGCAATAGCACTGCTAAGTATCCGAGCAAGCTGCATGAGAAGCTTGCTTT 779
Query 780 TCTTGAAGGAAAGGTTAAGAAAATTGCATCAGATATCAAGAAGACAAAGGATATGCTGGA 839
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 780 TCTTGAAGGAAAGGTTAAGAAAATTGCGTCAGATATCAAGAAGACAAAGGACATGCTGGA 839
Query 840 TTTGAACAATCCGGATTCGTCTAAGGTTATAATCTCTGATATACATCAGAAAATCACAGG 899
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 840 TTTGAACAATCCGGATTCATCTAAGGTTATAATCTCTGATATACAGCAGAAGATCACAGG 899
Query 900 GATTGAAAAGTCTATGAGTCATGTTATTGATGGTCCAGAGAAAAACAAA---ACT-A--- 952
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 900 GATTGAAAAGTCTATGAGTCATGTTATTGATGGTCCAGAGAAAAACAAAGCTACTCAAGT 959
Query 953 --CGAAAGCAAAAAGTTCTGTGAAAGGATTAAATAAGGAAGAGCTGGAAGACAGACTCTT 1010
|||||||||||| ||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct 960 GACGAAAGCAAAAACTTCGGTTAAAGGATTAAATAAGGAAGAGTTGGAAGACAGACTCTT 1019
Query 1011 GCCTCACCAGAGGTTGCTAAGGAGCAGAACTCAGTCCAAAACATCTTCGCATGTCTCAAA 1070
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1020 TCCTCACCAGAGGTTGCTAAGGAGCAGAACTCAGTCCAAAACATCTTCACATGTCTCAAA 1079
Query 1071 AGGCCATGATTCTGTTGAGTCCAACAAGGCAGTGAATGCTGAAGAAAAGCCGTCAGCTCC 1130
||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||||||
Sbjct 1080 AGGCCATGATTCTGTTGAGCCCAACAAGGCAGTTAATGTTGAAGAAAAGCCCTCAGCTCC 1139
Query 1131 TGTTGAGGAGAATGCGATAGCTCTAGAGTTC-TTGGCCTCACTTGACAAGGAAAAAGTCA 1189
|||||||||||||| |||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct 1140 TGTTGAGGAGAATGTGATAGCTCTAGAGTTCCTTG-CCTCACTTGATAAGGAAAAAGTCA 1198
Query 1190 CATTTATGAGTGATCAGAATGCGCTGGAAAATCTGGAAGTGCAGGAGATGGATACAGAGG 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CATTTATGAGTGATCAGAATGCGCTGGAAAATCTGGAAGTGCAGGAGATGGATACAGAGG 1258
Query 1250 AGCCGTCAAAGGAAAATGATGTCTCAAAAGACGTCAATCTGACTTCCAACTTAACTGAAA 1309
|||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||
Sbjct 1259 AGCCGTCAAAGGAAAATGATGTTTCAAAAGATGTCAATCTGACTTCCAACTTAAATGAAA 1318
Query 1310 TTCTTAGAGCAAACGAAGCCCTCGAGGAAATTGATGATGAAGAGAATAGAGAGGAGATGG 1369
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1319 TTCTCAGAGCAAACGAAGCCCTTGAGGAAATTGATGATGAAGAGAATAGAGAGGAGATGG 1378
Query 1370 AGCTGGAAGAAATAGATGATGGATGCATGTATCAACTCAATGACATTGGGTCCAAAACTT 1429
|||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1379 AGCTAGAAGAGATAGATGAGGGATGCATGTATCAACTCAATGACATTGGGTCCAGAACTT 1438
Query 1430 CTACAGGAGGATGGTTTGTATCAGAGGGCGAGGCAGTTATACTTGCTCATGATGATGGCT 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CTACAGGAGGATGGTTTGTATCAGAGGGCGAGGCAGTTATACTTGCTCATGATGATGGCT 1498
Query 1490 CGTGTTCCTATTACGATGTCGCTAACTCTGAG 1521
| || |||||||| ||||||||||||||||||
Sbjct 1499 CATGCTCCTATTATGATGTCGCTAACTCTGAG 1530
Score = 2161 bits (1170), Expect = 0.0
Identities = 1310/1376 (95%), Gaps = 15/1376 (1%)
Strand=Plus/Plus
Query 1603 GTGAAATCTGTGTACAGTCCTCCAGATGGTATCTCACCAAACACTTGGAGAGATTGCTGG 1662
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1531 GTGAAATCTGTGTACAGTCCTCCAGATGGTATCTCACCAAATACATGGAGAGATTGCTGG 1590
Query 1663 GTAGTTCGTGCACCGGGTGCTGATGGCTGCTCAGGCAGATATGTCGTAGCTGCTTCTGCT 1722
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1591 ATAGTTCGTGCACCGGGTGCAGATGGTTGCTCAGGCAGATATGTCGTAGCTGCTTCTGCT 1650
Query 1723 GGGAATACCTTAGAATCTGGCTTTTGTTCATGGGATTTCTACACGAAAGACATTAAGGCA 1782
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1651 GGGAATACCTTAGAGTCTGGCTTCTGTTCATGGGATTTCTACACGAAAGACATTAAGGCA 1710
Query 1783 CTCCACATCGAGGACGGATCTTCAAGAGTTTCAAGAACAGCTCTTGCTCCTCTACCCAAT 1842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 CTCCACATCGAGGACGGATCTTCAAGAGTTTCAAGAACAGCTCTTGCTCCTCTACCCAAT 1770
Query 1843 AACACATCACATGGTAGGAACACTCCGGCTTGTGCAGTGGTACCAGAAACTCAACAATGG 1902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 AACACATCACATGGTAGGAACACTCCGGCTTGTGCAGTGGTACCAGAAACTCAACAATGG 1830
Query 1903 TGGTACAGACCGTGTGGTCCTCTTATAGCATCAACTGGTAGTTTTCAAAGTATAGTAAAG 1962
||||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||||||
Sbjct 1831 TGGTACAGACCGTGTGGTCCTCTTATAGCCTCAACCGGTAGTTTCCAAAGTGTAGTAAAG 1890
Query 1963 GTTTTTGACATACGAGATGGGGAACAAATCATGAAATGGG-GTGTGCAAAATCCTGTGTC 2021
|| ||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||
Sbjct 1891 GTGTTTGACATACGAGATGGGGAACAAATCATGAGATGGGAG-GTGCAGAATCCTGTGTC 1949
Query 2022 AGCTTTAGATTATTCGAGCCCTTTACAATGGAGGAATCGAGGAAAACTTGTCATAGCCGA 2081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1950 AGCTTTAGATTATTCGAGCCCTTTACAATGGAGGAATCGAGGAAAACTTGTCATAGCAGA 2009
Query 2082 AACTGAAGCAATTTCTGTTTGGGATGTCAATTCCCTTCACCCTGAAGCACAGCACACCAT 2141
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2010 ATCTGAAGCAATTTCTGTTTGGGATGTCAATTCCCTTCACCCTGAAGCACAGCATACCAT 2069
Query 2142 TTCCTCTTCAGGGCGAAAAATCTCAGCTTTTCATATCAACAACACAGATGCTGAAGTTGG 2201
||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2070 TTCCTCTTCAGGGAGAAAAATCTCGGCTTTTCATATCAATAACACAGATGCTGAAGTTGG 2129
Query 2202 GGGTGGTGTTCGTCAAAGAGTAAGTTCCTTGGATGCTGAAGGAAACGACGGAGTATTCTG 2261
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 2130 AGGTGGTGTTCGTCAAAGAGTAAGTTCCTTGGATGCTGAAGGCAACGATGGAGTTTTCTG 2189
Query 2262 CACTAGTGATTCAATCAACATCTTAGATTTTCGTAACCCATCTGGCATTGGTGCTAAAAT 2321
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2190 CACTAGTGATTCAATCAACATCTTGGATTTTCGTAACCCATCTGGTATTGGTGCTAAAAT 2249
Query 2322 CCCCAAACTCGGTGTTAATGCTCAATGTGTATCATCTCGAGGAGATTCAGTGTTTCTAGG 2381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2250 CCCCAAACTCGGTGTTAATGCTCAATGTGTATCATCTCGAGGAGATTCAGTGTTTCTAGG 2309
Query 2382 ATGTACCAATCAGAAATCAACTG-TCAAGAAACAAATGGCTTCTTCTTCTCAGGTGCAGC 2440
||||||||||||||||||||||| | || ||||| ||||||||||| ||||| |||||||
Sbjct 2310 ATGTACCAATCAGAAATCAACTGCTAAA-AAACATATGGCTTCTTCATCTCAAGTGCAGC 2368
Query 2441 AATTCTCCATAAGGAAACAGCGTCTCGTGAGCACATACAGTCTGCCTGACTCAAACTCTC 2500
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2369 AATTCTCCATAAGGAAACAGCGTCTCGTGAGCACATACAGTCTGCCAGACTCTAACTCTC 2428
Query 2501 ACCCGCACCACTCTGCAATAACCCAAGTCTGGGGAAATTCAAATTTTGTCATGGCTACTT 2560
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2429 ATCCGCACCACTCTGCAATAACCCAAGTCTGGGGAAATTCAAATTTTGTCATGGCTACTT 2488
Query 2561 CTGGTATGGGACTATTTGTGTTTGATACTGCAAAAGAAGAGACCTTGCAACAACAGCC-A 2619
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2489 CTGGTATGGGACTATTCGTGTTTGATACTGCAAAAGAAGAGACCTTGCAACAACAGCCTA 2548
Query 2620 TTGACAAGTGA-CTATGGAAGCGTTCAAACAGTAAGAGAGATCATCGGTCCAAACGATAT 2678
| |||||| || | ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2549 T-GACAAGCGAGCG-TGGAAGCGTTCAAACAGTAAGAGAGATTATCGGTCCAAACGATAT 2606
Query 2679 GTATTGCCCGTCATTTGACTACTCAGGTTGTCGTGTACTCCTCATCTCAAGAGACCGCCC 2738
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2607 GTATTGCCCGTCATTTGATTACTCAGGTTGTCGTGTACTCCTCATCTCAAGAGACCGCCC 2666
Query 2739 GGCTTTATGGAGATACCTCTTATAGGTGAGTAAATCAATCTAAAGATGGTGATCCCACGA 2798
||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||
Sbjct 2667 GGCTTTATGGAGATACCTCTTATAGGTAAGTAAATCAAGCTAAAGATGGTGTTCCCACGA 2726
Query 2799 GACCTATATTTAGCAAGTGTTA-GCACAGCTTGTGCTGCTTTCTCTTGTGTTGTGTTCAT 2857
||||||| || ||||||||||| ||||| |||||||||||| ||||||||||||||||||
Sbjct 2727 GACCTAT-TT-AGCAAGTGTTAAGCACACCTTGTGCTGCTT-CTCTTGTGTTGTGTTCAT 2783
Query 2858 ACTATTGCTCTTTGTTACCAACTATGAT-GCTTTTCTGGATTCTC-TTTCGTGCTATTTG 2915
||| ||||||| ||||||||||| |||| | ||||||| |||||| |||| |||||||||
Sbjct 2784 ACTTTTGCTCTCTGTTACCAACTTTGATAG-TTTTCTGAATTCTCCTTTCATGCTATTTG 2842
Query 2916 CTTATTTGACTTTACTCTGTACATACATGTGGTGTTTTGATCAATTTCCTAGGTTT 2971
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2843 CTTATTTGGCTTTACTCTGTACATACTTGTGGTGTTTTGATCAATTTAATAGGTTT 2898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115489622840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5