BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G14315.1

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg890921 jgi|Araly1|890921|Al_scaffold_0007_2907                    285    1e-76


> Ahg890921 jgi|Araly1|890921|Al_scaffold_0007_2907
Length=192

 Score =  285 bits (154),  Expect = 1e-76
 Identities = 172/181 (95%), Gaps = 0/181 (0%)
 Strand=Plus/Plus

Query  37   AATGGCGAATGAGTATGGATTCGGGATGGGTTCGGTTTTGGCGATTGTTGTCGTTGCACT  96
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  12   AATGGCGAATGAGTATGGATTCGGGATGGGTTCGGTTTTGGCGATTGTTGTCGTTGCACT  71

Query  97   AATGTTACTGTTTGTTCCGTTGATGATGGGACCGGTGACTGCACCATCTCTTCCAATGAT  156
            |||||||||| || |||||||||||||||||||||| ||||| ||||||| || | | ||
Sbjct  72   AATGTTACTGATTCTTCCGTTGATGATGGGACCGGTAACTGCTCCATCTCCTCTACTTAT  131

Query  157  CTTGATGTTTCCGGTCGTATTGCTCTTTGTGTTTCTCTATCTCCATTTTACTTCCAAGTG  216
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  132  CTTGATGTTCCCGGTCGTATTGCTCTTTGTGTTTCTCTATCTCCATTTTACTTCCAAGTG  191

Query  217  A  217
            |
Sbjct  192  A  192



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12782122315


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5