BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14320.2
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946959 jgi|Araly1|946959|scaffold_703188.1 449 9e-126
> Ahg946959 jgi|Araly1|946959|scaffold_703188.1
Length=365
Score = 449 bits (243), Expect = 9e-126
Identities = 282/301 (94%), Gaps = 2/301 (1%)
Strand=Plus/Plus
Query 86 AGCTTCACCGAAGAGCGAAAATGGTGAACATTCCGAAAACTAAGAACACTTACTGCAAGA 145
|||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 3 AGCTTCTCCGAAGAGCGAAAATGGTGAACATTCCTAAAACCAAGAACACTTACTGCAAGA 62
Query 146 ACAAGGAGTGCAAGAAGCATACCTTGCACAAGGTGACGCAGTATAAGAAA-GGTAAAGAT 204
||||||| ||||||||||| |||||||||||||| || ||||| || ||| ||||||||
Sbjct 63 ACAAGGAATGCAAGAAGCACACCTTGCACAAGGTTACTCAGTACAA-AAAGGGTAAAGAC 121
Query 205 AGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAG 264
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 122 AGTCTTGCTGCCCAAGGAAAGCGTCGTTATGACCGTAAACAATCTGGTTATGGAGGTCAG 181
Query 265 ACCAAGCCCGTCTTCCACAAGAAGGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAA 324
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 182 ACCAAGCCCGTCTTCCACAAGAAGGCTAAGACAACCAAGAAGATTGTCCTGAGGCTTCAG 241
Query 325 TGCCAAAGCTGCAAGCATTTCTCGCAACGCCCGATTAAGAGGTGCAAGCACTTTGAGATC 384
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 242 TGCCAAAGCTGCAAACATTTCTCTCAACGCCCGATTAAAAGGTGCAAGCACTTTGAGATC 301
Query 385 G 385
|
Sbjct 302 G 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24932387718
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5