BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14330.1
Length=2802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493473 jgi|Araly1|493473|fgenesh2_kg.7__2906__AT4G14330.1 4159 0.0
> Ahg493473 jgi|Araly1|493473|fgenesh2_kg.7__2906__AT4G14330.1
Length=2699
Score = 4159 bits (2252), Expect = 0.0
Identities = 2539/2678 (95%), Gaps = 18/2678 (1%)
Strand=Plus/Plus
Query 1 ATTTCAATTTCACTCTTTCGAAA-CTT----C---TTCAACAATGGCACCGACACCATCT 52
||||||||||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 1 ATTTCAATTTCACTCTTTCGAAAGCTTGAAACTTTTTCAACAATGGCACCGACACCATCA 60
Query 53 TCTTCAAGATCAAATCAAACTCAATACACCTTAATCAGAACTCCACAAACAAAACAACGT 112
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TCTTCAAGATCAAATCAAACCCAATACACCTTAATCAGAACTCCACAAACCAAACAACGT 120
Query 113 CTCAATTTCCACTCAAAAACCCCAAACCCAGACGGATCTAAAGATCCATCTCCACCGGAG 172
|||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 121 CTCAATTTCCACTCGAAAACCCCAAACCCAGAAGGATCTAAAGATCCAACACCACCGGAG 180
Query 173 CATCCAGTTGAAGTAATCGGCCGGATCCGAGATTACCCTGACCGGAAAGAGAAATCACCT 232
|||||||||||||||||||||||||||||||||||||| || || ||||||||| | ||
Sbjct 181 CATCCAGTTGAAGTAATCGGCCGGATCCGAGATTACCCAGATCGAAAAGAGAAAACTTCT 240
Query 233 TCGATCTTACAAGTCAACACAGATAATCAAACGGTACGAGTCAGAGCTGATGTTGGGTAC 292
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 TCGATCTTGCAAGTTAACACAGATAATCAAACGGTACGAGTCAGAGCTGATATTGGGTAC 300
Query 293 AGAGACTTCACACTCGACGGTGTTTCTTTCTCGGAGCAAGAAGGTCTTGAAGAGTTCTAC 352
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 AGAGATTTCACTCTTGACGGTGTTTCTTTCTCGGAGCAAGAAGGTCTTGAAGAGTTTTAC 360
Query 353 AAGAAGTTTATAGAAGAGAGGATTAAAGGAGTGAAAGTTGGGAATAAATGCACGATTATG 412
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 361 AAGAAGTTTATAGAAGAGAGGATTAAAGGTGTCAAAGTTGGGAATAAATGCACGATTATG 420
Query 413 ATGTATGGACCTACTGGTGCTGGAAAGAGTCATACTATGTTTGGTTGTGGGAAAGAGCCT 472
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 421 ATGTATGGACCTACTGGTGCTGGAAAGAGTCATACTATGTTTGGTTGTGGCAAGGAGCCC 480
Query 473 GGGATTGTGTATCGTTCTTTGAGAGATATATTGGGAGATTCTGATCAAGATGGTGTTACT 532
|||||||||||||| |||||| | ||||| ||||| ||||| ||||||||||||||||||
Sbjct 481 GGGATTGTGTATCGGTCTTTGCGGGATATTTTGGGTGATTCGGATCAAGATGGTGTTACT 540
Query 533 TTTGTTCAAGTTACTGTTCTT-GAGGTTTATAATGAGGAGATTTATGATCTTCTTTCGAC 591
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTTGTTCAAGTTACTGTT-TTGGAGGTTTATAATGAGGAGATTTATGATCTTCTTTCGAC 599
Query 592 TAATAGTAGTAACAATTTAGGTATTGGTTGGCCTAAAGGAGCAAGCACTAAGGTGAGGCT 651
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 600 TAATAGTAGTAACAATTTAGGGATTGGTTGGCCTAAAGGAGGAAGCACTAAGGTGAGGCT 659
Query 652 TGAAGTAATGGGGAAAAAGGCGAAAAACGCAAGTTTTATTTCTGGGACAGAGGCTGGGAA 711
|||||||||||| ||||||||||||||||| | |||||||| |||||||||||||| ||
Sbjct 660 TGAAGTAATGGGCAAAAAGGCGAAAAACGCGACCTTTATTTCAGGGACAGAGGCTGGAAA 719
Query 712 GATTTCTAAAGAAATTGTCAAAGTGGAGAAACGGAGAATTGTGAAGAGTACACTTTGTAA 771
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 GATCTCTAAAGAAATTGTCAAAGTGGAGAAACGGAGAATTGTGAAGAGTACACTTTGCAA 779
Query 772 CGAAAGAAGTTCTCGGAGTCACTGCATTATCATACTTGATGTGCCAACTGTTGGGGGAAG 831
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 TGAAAGAAGTTCCCGGAGTCACTGCATTATCATACTTGATGTGCCAACTGTTGGTGGAAG 839
Query 832 ATTGATGCTTGTTGACATGGCTGGTTCTGAAAATATAGACCAAGCTGGGCAGACTGGATT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATTGATGCTTGTTGACATGGCTGGTTCTGAAAATATAGACCAAGCTGGGCAGACTGGATT 899
Query 892 TGAAGCTAAGATGCAAACTGCTAAGATCAACCAGGGAAATATTGCACTGAAGCGAGTTGT 951
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 TGAAGCTAAGATGCAAACAGCTAAGATCAACCAGGGAAATATAGCACTGAAGCGAGTTGT 959
Query 952 GGAATCTATAGCAAATGGAGATTCTCATGTACCCTTTAGAGACAGCAAGCTGACCATGCT 1011
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 960 GGAATCTATAGCAAATGGAGATTCTCACGTACCCTTTAGAGACAGCAAGCTGACGATGCT 1019
Query 1012 TCTCCAGGACTCTTTTGAAGATGACAAGTCAAAGATTCTAATGATCCTGTGTGCGAGCCC 1071
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 TCTTCAGGACTCTTTTGAAGATGACAAGTCAAAGATTCTAATGATCCTGTGTGCAAGCCC 1079
Query 1072 GGATCCAAAGGAAATGCACAAGACTCTCTGTACTCTAGAGTATGGGGCAAAAGCAAAGTG 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GGATCCAAAGGAAATGCACAAGACTCTCTGTACTCTAGAGTATGGGGCAAAAGCAAAGTG 1139
Query 1132 CATAGTTCGTGGGTCTCATACTCCAAACAAAGATAAGTATGGGGGTGATGAGTCTGCTTC 1191
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 TATAGTTCGTGGGTCTCATACTCCAAACAAAGATAAGTATGGGGGTGATGAGTCTGCCTC 1199
Query 1192 TGCTGTGATTTTGGGATCAAGAATAGCTGCCATGGATGAGTTCATTATCAAACTCCAGTC 1251
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1200 TGCTGTGATTTTGGGATCAAGAATAGCTGCCATGGATGAGTTTATTCTCAAACTCCAGTC 1259
Query 1252 TGagaagaagcaaaaagaaaaagaaaggaatgaggcacaaaagcagctgaagaagaagga 1311
|||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1260 CGAGAAGAAGCAACAAGAAAAAGAAAGGAACGAGGCACAAAAGCTGCTGAAGAAGAAGGA 1319
Query 1312 agaggaagTTGCTGCTTTAAGATCTCTTTTAACACAGAGGGAAGCTTGTGCTACCAATGA 1371
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1320 AGAGGAAGTTGCTGCTTTAAGATCTCTTTTAACACAGAGGGAAGCATGTGCTACCAATGA 1379
Query 1372 AGAGGAGATAAAAGAGAAAGTAAACGAGAGAACCCAGCTTTTGAAGTCGGAACTAGATAA 1431
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1380 AGAGGAGATAAAAGAGAAAGTAAACGAGAGAACCCAGCTTTTGAAATCGGAGCTAGAGAA 1439
Query 1432 GAAACTTGAAGAATGCCGAAGAATGGCTGAGGAATTTGTTGAGATGGAGAGAAGGAGAAT 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GAAACTTGAAGAATGCCGAAGAATGGCTGAGGAATTTGTTGAGATGGAGAGAAGGAGAAT 1499
Query 1492 GGAGGAAAGGATAGTTCAGCAGCAAGAGGAACTGGAGATGATGAGGAGACGGTTAGAGGA 1551
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1500 GGAGGAAAGGATTGTGCAGCAGCAAGAGGAACTGGAGATGATGAGGAGACGGTTGGAGGA 1559
Query 1552 AATCGAGGTTGAGTTCCGCCGCTCAA---ATGGAGGAAGTGTTGATGAAACTAGTGGGTT 1608
||| ||| ||||||| || ||||||| ||||||| ||| |||||||||||||||||||
Sbjct 1560 AATTGAGATTGAGTTTCGGCGCTCAAGGGATGGAGGCAGTATTGATGAAACTAGTGGGTT 1619
Query 1609 TGCCAAAAGACTCAGGAGTCTTTACTCTGATGATGATCCTGGTATGGTGAAGTCAATGGA 1668
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TGCCAAAAGACTTAGAAGTCTTTACTCTGATGATGATCCTGGTATGGTGAAGTCAATGGA 1679
Query 1669 CCTTGACATGGGTGATCCAGAACCTGTCAAGCAAGTGTGGGGAGCTGTTTCACACCAATC 1728
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1680 CCTTGACATGGGTGATCCAGAACCAGTCAAGCAAGTATGGGGAGCTGTTTCACACCAATC 1739
Query 1729 AAGCAACACTATTAGTAGCAACTTCACTAACCTTTTGCAACCGAAGCCTTCAGAGAATAT 1788
||||||||| ||||| ||||| ||||||||| |||||||||| |||||||||||||||||
Sbjct 1740 AAGCAACACAATTAGCAGCAATTTCACTAACATTTTGCAACCAAAGCCTTCAGAGAATAT 1799
Query 1789 GCTTACACAGATGTATCCTGACCGGGTATGCTTGAGCACTGTCTTTgaagaagaagaagt 1848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1800 GCTTACACAGATGTATCCTGACCGGGTATGCTTGAGCACTGTCTTTGAAGAAGAAGAGGT 1859
Query 1849 tgaagaagaggaagaaaaagTGATAGTCGAGGATAAAAGCATCTGCTTGATAACAACACC 1908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 TGAAGAAGAGGAAGAAAAAGTGATAGTCGAGGATAAAAGCATCTGCTTGATAACAACACC 1919
Query 1909 AATGCCTAGTTTGAACTCTGAAGGTTTGGGTAAAGAGAACTGCTTCAACGGTGCAGATGA 1968
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1920 AATGCCTAGTTTGAACTCTGAAGGTTTGGGTAAAGAGAACTGTTTCAACGGTGCAGATGA 1979
Query 1969 CAAGGAATCAGCCTCGTCTAGAAGGTTGAGAATTCAAAACATTTTCACCCTTTGTGGCAA 2028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 CAAGGAATCAGCCTCGTCTAGAAGGTTGAGAATTCAAAACATTTTCACCCTTTGTGGCAA 2039
Query 2029 TCAGAGAGAGCTGTCTCAACACAGTGGACAGGAGGAGGATCAAGCCAATATTGCATCACC 2088
||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||
Sbjct 2040 TCAGAGAGAGCTGTCTCAACACAGTGGGCAAGAGGAGGACCAAGCCAATACTGCATCACC 2099
Query 2089 TGATAAGAAAGACAATCAGTTCTTTTCTATTACGAATAAGGCCGAAGCACTAGCAGTAGA 2148
|| |||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||
Sbjct 2100 TGTTAAGAAAGACAATCAGCTGTTTTCTATAACGAATAAGGCCGAAGCACTAGCAGTGGA 2159
Query 2149 AGAAGCAAAGGAAAACAATATCTCAGTCGATCAAAGGGAAAACGGTCAGCTAGATATCTA 2208
|| |||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||
Sbjct 2160 AGGAGCAAAGGAAAACAATATCTCAGTCGATGAAAGGAAAAACGTTCAGATAGATATCTA 2219
Query 2209 TGTTAAATGGGAAACAGCTGCTGATAACCCTCGAAAGCTCATAACAACACTGAGAGTTAC 2268
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2220 TGTTAAATGGGAAACAACAGCTGATAACCCTCGAAAGCTCATAACAACACTGAGGGTTAC 2279
Query 2269 AAAGGATGCAACACTAGCTGACTTGAGGAAGCTTATTGAGATCTACCTTGGATCTGATAA 2328
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 AAAGGACGCAACACTAGCTGACTTGAGGAAGCTTATTGAGATCTACCTTGGATCTGATAA 2339
Query 2329 TCAGGCTTTTACCTTTCTCAAGCTCGGGGAACCATGTGGAGCTCAAGTGGCAAAGGAGAA 2388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2340 TCAGGCTTTTACCTTTCTCAAGCTCGGGGAACCATGTGGAGCTCAAGTGGCAAAGGAGAA 2399
Query 2389 AGAATCAACAGTTCAAGCTACGAGCCTACCTCTCTGCAACGGACACGCATACCTCGCCAC 2448
|||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct 2400 AGAATCAACAGTTCAAGCGACGAGCCTACCTTTCTGCAACGGACACGCTTACCTCGCCAC 2459
Query 2449 TTTGAGACCAGGAAAGAGCTCACAACATAAAAGTCTTCAACCTGCAAGCCCACTTCCACT 2508
||||||||| |||||||||||||||| | ||||||||| ||| ||||| |||||||| ||
Sbjct 2460 TTTGAGACCGGGAAAGAGCTCACAACTTCAAAGTCTTCCACCGGCAAGTCCACTTCCTCT 2519
Query 2509 TAA-TCCCATAGAAAACATGATGGAAGTTACCCCCATCTCAAAAGTGACACCGAACCATC 2567
|| |||||| ||||||| |||| ||| ||||||||||||||||||||||||||| |
Sbjct 2520 -AACTCCCATTGAAAACAAGATGC---TTAGCCCCATCTCAAAAGTGACACCGAACCACC 2575
Query 2568 AAGTTGATGAATTTTCATCACCCAATCTCGTAGCTCATCTCAGCTCCACTCCATTCATCA 2627
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2576 AAGTTGATGAATTTTCATCACCCATTCTCGCAGCTCATCTCAGCTCCACTCCATTCATCA 2635
Query 2628 CTCTCAGAAGACATTAGTCGCTATGTCTTGTTTTCTCT 2665
|||| |||||||||||||| ||||||||| |||| |||
Sbjct 2636 CTCTGAGAAGACATTAGTCACTATGTCTTCTTTTGTCT 2673
Score = 67.6 bits (36), Expect = 5e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 2668 TCTTCTTTTGTCTGTCCAAAGGTAGCTTTTGAAAGATGT 2706
|||||||||||||||||||||||||||||||||| ||||
Sbjct 2661 TCTTCTTTTGTCTGTCCAAAGGTAGCTTTTGAAATATGT 2699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105738520120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5