BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14340.1
Length=1950
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946957 jgi|Araly1|946957|scaffold_703186.1 2364 0.0
Ahg479849 jgi|Araly1|479849|fgenesh2_kg.3__2550__AT3G23340.1 1160 0.0
Ahg919122 jgi|Araly1|919122|scaffold_100403.1 640 0.0
> Ahg946957 jgi|Araly1|946957|scaffold_703186.1
Length=1411
Score = 2364 bits (1280), Expect = 0.0
Identities = 1369/1412 (97%), Gaps = 5/1412 (0%)
Strand=Plus/Plus
Query 311 TCATCGGAATTCGGAAAAAGATGGATCGGAATCAAAAGATGGATCACGTTATCGGCGGGA 370
||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct 1 TCATCGGAATTCGAAAAAAGATGGATCGGATTCAAAAGATGGATCACGTCATCGGTGGGA 60
Query 371 AGTTTAAGTTGGGTAGGAAGCTTGGAAGTGGATCATTCGGTGAACTTTATTTAGGGATCA 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGTTTAAGTTGGGTAGGAAGCTTGGAAGTGGATCATTCGGTGAACTTTATTTAGGGATCA 120
Query 431 ATATTCAAACTGGAGAAGAAGTCGCAGTTAAGCTGGAACCTGTGAAGACGAGGCATCCTC 490
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 ATATTCAAACTGGAGAAGAAGTAGCAGTTAAGCTGGAACCTGTGAAGACGAGGCATCCTC 180
Query 491 AACTGCAGTATGAATCGAAAATATATATGTTTCTTCAAGGAGGAACGGGTGTTCCCCATC 550
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 AACTGCAGTATGAATCGAAAATATATATGTTTCTTCAAGGAGGAACGGGTGTACCCCATC 240
Query 551 TGAAATGGTTTGGAGTTGAGGGTGAATACAGTTGCATGGTTATCGATCTTCTTGGGCCAA 610
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 TGAAATGGTTCGGAGTTGAGGGTGAATACAGTTGCATGGTTATCGATCTTCTTGGGCCCA 300
Query 611 GCTTGGAGGACTTATTCAATTACTGCAAGCGAATATTTTCATTAAAATCTGTTTTAATGC 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTTGGAGGACTTATTCAATTACTGCAAGCGAATATTTTCATTAAAATCTGTTTTAATGC 360
Query 671 TTGCAGATCAATTGATATGTAGAGTTGAGTATATGCATTCGCGGGGTTTTCTTCACCGCG 730
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 TTGCAGATCAATTGATATGTAGAGTTGAGTACATGCATTCGCGGGGTTTTCTTCACCGCG 420
Query 731 ATATTAAACCAGACAACTTTTTGATGGGTCTTGGGCGCAGAGCAAACCAGGTGTATATCA 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATATTAAACCAGACAACTTTTTGATGGGTCTTGGGCGCAGAGCAAACCAGGTGTATATCA 480
Query 791 TTGATTATGGCCTTGCTAAAAAATACAAGGATCTTCAGACACAAAAGCATATACCATACA 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGATTATGGCCTTGCTAAAAAATACAAGGATCTTCAGACACAAAAGCATATACCATACA 540
Query 851 GGGAAAACAAGAATCTTACAGGAACTGCTCGGTATGCAAGTGTGAACACACACCTTGGGA 910
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 GGGAAAACAAGAATCTTACAGGTACTGCTCGGTATGCAAGTGTGAACACACACCTTGGGA 600
Query 911 TTGAGCAAAGTAGAAGAGATGATCTGGAGTCACTTGGTTATGTGTTGATGTATTTTCTAC 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGAGCAAAGTAGAAGAGATGATCTGGAGTCACTTGGTTATGTGTTGATGTATTTTCTAC 660
Query 971 GAGGAAGTCTTCCGTGGCAAGGTTTAAAAGCTGGTACGAAGAAGCAGAAATATGACAAGA 1030
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 GAGGAAGTCTTCCGTGGCAAGGTTTAAAAGCTGGTACGAAGAAGCAGAAGTATGACAAGA 720
Query 1031 TTAGTGAAAAGAAGATGCTTACTTCTGTAGAGACTCTTTGCAAGTCGTATCCATCAGAGT 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTAGTGAAAAGAAGATGCTTACTTCTGTAGAGACTCTTTGCAAGTCGTATCCATCAGAGT 780
Query 1091 TCACATCGTACTTCCATTACTGTCGTTCATTGAGATTTGAGGACAAACCGGATTATTCAT 1150
| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 781 TTACCTCGTACTTCCATTACTGTCGATCATTGAGATTTGAGGACAAACCAGATTATTCGT 840
Query 1151 ATCTGAGAAGACTTTTTAGGGATCTTTTCATTCGTGAAGGTTATCAGCTTGATTATGTGT 1210
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 841 ATCTGAGAAGACTTTTTAGGGACCTTTTCATTCGTGAAGGTTATCAGCTCGATTACGTGT 900
Query 1211 TTGATTGGACAATCTCGAAGTATCCTCAGATTGGCTCTAGTTCGAGACCAAGGCCAACTC 1270
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 TTGATTGGACAATCTCGAAGTATCCTCAGATTGGTTCTAGTTCGAGACCAAGGCCAACTA 960
Query 1271 CAAGACCAGCGTTGGACCCTCCAGGACCACCTGCAGAAAGAGCTGAAAAGCCTACAGTCG 1330
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 961 CAAGACCAGCCTTGGACCCTCCAGGACCACCTGCAGAAAGAGCTGAAAAGCCTACAGTAG 1020
Query 1331 GACAGGACCTGCGAGGAAGATTTACAGGTGCAATTGAGGCATTCACCAGACGAAATGTTT 1390
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 1021 GACAGGACCTGCGAGGAAGATTTACAGGCGCCATTGAGGCATTTACCAGACGAAATGTTT 1080
Query 1391 CAAGCCAAGGCGCTCTTGGTGATCGCTCTAGACACAGATCTTCTGATGATATACCCTCTT 1450
||||||||||||||| |||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1081 CAAGCCAAGGCGCTCATGGTGACCGCTCGAGACACAGATCTTCGGATGATATACCCTCTT 1140
Query 1451 CTGCCAAGGAAGTGCACGAGTCTCGAAATGGAAGTACCTCAAAGAGAGGTGTGATATCAA 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTGCCAAGGAAGTGCACGAGTCTCGAAATGGAAGTACCTCAAAGAGAGGTGTGATATCAA 1200
Query 1511 GCACCAGACCTGGCTCATCAGCTGAACCAAGCGAGAACCACTCAAGCCGACTATTTTCAA 1570
||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1201 GCAGCAGACCTGGCTCATCAGCTGAGCCAAGCGAGAACCGTTCAAGCCGACTATTTTCAA 1260
Query 1571 GTGGTTCACGTCATGCCACAACCCAACGGGTTCCACAGAGCTATGAATCTGCAGCTGCAG 1630
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1261 GTGGATCACGTCATGCCACAACCCAAAGGGTTCCACAGAGCTATGAATCTGCAGCTGCA- 1319
Query 1631 CAAGGCCTGGGCATGAGGATGCCATTAGAAACTTCGAGCTCCTTACCATCGGCTCTGG-A 1689
| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 1320 -A-GGCCTGGGCATGAGGATGCCATTAGAAGCTTCGAGCTCCTTACCATTGGCTCTGGGA 1377
Query 1690 AAGAAGAGGAAATGAAGATAGGGAAGGAGAAG 1721
|| |||||||||||||||||||||||||||||
Sbjct 1378 AA-AAGAGGAAATGAAGATAGGGAAGGAGAAG 1408
> Ahg479849 jgi|Araly1|479849|fgenesh2_kg.3__2550__AT3G23340.1
Length=1694
Score = 1160 bits (628), Expect = 0.0
Identities = 919/1060 (87%), Gaps = 17/1060 (2%)
Strand=Plus/Plus
Query 338 GGAATC-AAAAGATGGATCACGTTA-TCGGCGGGAAGTTTAAGTTGGGTAGGAAGCTTGG 395
|||||| ||| ||||||||| | || |||| || ||||| ||||| ||||| ||| ||||
Sbjct 211 GGAATCGAAACGATGGATCATG-TATTCGGTGGCAAGTTCAAGTTAGGTAGAAAGATTGG 269
Query 396 AAGTGGATCATTCGGTGAACTTTATTTAGGGATCAATATTCAAACTGGAGAAGAAGTCGC 455
||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||| ||
Sbjct 270 TAGTGGATCATTTGGTGAACTTTATATAGGGATTAATGTTCAAACTGGAGAAGAAGTTGC 329
Query 456 AGTTAAGCTGGAACCTGTGAAGACGAGGCATCCTCAACTGCAGTATGAATCGAAAA-TAT 514
|||| ||||||||||||||||| | ||||||||| || || |||||||| |||| |||
Sbjct 330 TCTTAAACTGGAACCTGTGAAGACAAAGCATCCTCAGCTCCATTATGAATC-AAAAGTAT 388
Query 515 ATATGTTTCTTCAAGGAGGAACGGGTGTTCCCCATCTGAAATGGTTTGGAGTTGAGGGTG 574
| ||| ||||||||||||| ||||||||||| ||||| |||||||| || |||||||| |
Sbjct 389 ACATGCTTCTTCAAGGAGGGACGGGTGTTCCGCATCTCAAATGGTTCGGTGTTGAGGG-G 447
Query 575 AA-TACAGTTGCATGGTTATCGATCTTCTTGGGCCAAGCTTGGAGGACTTATTCAATTAC 633
|| |||| ||| |||| ||| || |||||||| ||||||||||| ||||| ||||| ||
Sbjct 448 AATTACAATTGTATGGCTATTGACCTTCTTGGTCCAAGCTTGGAAGACTTGTTCAACTAT 507
Query 634 TGCAAGC-GAATATTTTCATT-AAAATCTGTTTTAATGCTTGCAGATCAATTGATATGTA 691
|||| | |||| ||||| || |||| ||||| |||||||||| ||||| || ||| |
Sbjct 508 TGCACTCGGAAT-TTTTCTTTGAAAA-CTGTTCTAATGCTTGCTGATCAGTTAATAAACA 565
Query 692 GAGTTGAGTATATGCATTCGCGGGGTTTTCTTCACCGCGATATTAAACCAGACAACTTTT 751
||||||||||||||||||| || || ||||||||||| ||||||||||| ||||||||||
Sbjct 566 GAGTTGAGTATATGCATTCTCGAGGATTTCTTCACCGTGATATTAAACCGGACAACTTTT 625
Query 752 TGATGGGTCTTGGGCGCAGAGCAAACCAGGTGTATATCATTGATTATGGCCTTGCTAAAA 811
|||||||||| || |||| ||||||||||||||| || ||||||||||| ||||||||||
Sbjct 626 TGATGGGTCTCGGTCGCAAAGCAAACCAGGTGTACATTATTGATTATGGGCTTGCTAAAA 685
Query 812 AATACAAG-GATCTTCAGACACAAAAGCATATACCATACAGGGAAAACAAGAATCTTACA 870
| || || |||||||||||||| ||||||||||| |||| |||||| |||||||| ||
Sbjct 686 AGTA-TAGAGATCTTCAGACACACAAGCATATACCCTACAAGGAAAATAAGAATCTGACT 744
Query 871 GGAACTGCTCGGTATGCAAGTGTGAACACACACCTTGGGATTGAGCAAAGTAGAAGAGAT 930
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 745 GGAACTGCTCGGTATGCAAGTGTCAACACACACCTTGGGATTGAGCAAAGTAGGCGAGAT 804
Query 931 GATCTGGAGTCACTTGGTTATGTGTTGATGTATTTTCTACGAGGAAGTCTTCCGTGGCAA 990
||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 805 GATCTGGAGTCTCTTGGCTATGTGTTGATGTATTTTCTACGAGGAAGTCTACCATGGCAA 864
Query 991 GGTTTAAAAGCTGGTACGAAGAAGCAGAAATATGACAAGATTAGTGAAAAGAAGATGCTT 1050
||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 865 GGTCTAAAAGCTGGTACCAAGAAACAGAAATATGAAAAGATTAGTGAAAAGAAGATGCTT 924
Query 1051 ACTTCTGTAGAGACTCTTTGCAAGTCGTATCCATCAGAGTTCACATCGTACTTCCATTAC 1110
||| | |||||| |||||| ||||| | |||||||||||||||||| || |||||||||
Sbjct 925 ACTCCAGTAGAGGTTCTTTGTAAGTCATTTCCATCAGAGTTCACATCATATTTCCATTAC 984
Query 1111 TGTCGTTCATTGAGATTTGAGGACAAACCGGATTATTCATATCTGAGAAGACTTTTTAGG 1170
||||| |||||||| |||||||| ||||| |||||||||||||| | ||||||||| ||
Sbjct 985 TGTCGATCATTGAGGTTTGAGGATAAACCAGATTATTCATATCTAAAAAGACTTTTCAGA 1044
Query 1171 GATCTTTTCATTCGTGAAGGTTATCAGCTTGATTATGTGTTTGATTGGACAATCTCGAAG 1230
|| ||||| ||||| |||||||||||| |||| |||||||||||||||||||||| |||
Sbjct 1045 GACCTTTTTATTCGGGAAGGTTATCAGTTTGACTATGTGTTTGATTGGACAATCTTGAAA 1104
Query 1231 TATCCTCAGATTGGCTCTAGTTCGAGACCAAGGCCAACTCCAAGACCAGCGT-TGGACCC 1289
|||||||||| |||||||| ||||| ||||||||||| ||||| |||||| | | |||||
Sbjct 1105 TATCCTCAGAGTGGCTCTATTTCGAAACCAAGGCCAAATCCAAAACCAGC-TCTAGACCC 1163
Query 1290 TCCAGGACCACCTGCAGAAAGAGCTGAAAAGCCTACAGTCGGACAGGACCTGCGAGGAAG 1349
|||||||||| |||| ||| || ||||||||||| ||| || ||||| ||||||| |||
Sbjct 1164 TCCAGGACCATCTGCGGAACGAAATGAAAAGCCTATAGTGGGGCAGGATCTGCGAGAAAG 1223
Query 1350 ATT-TACAGGTGCAATTGAGGCATTCACCAGACGAAATGT 1388
||| | |||||||| |||| |||||| | ||||| |||||
Sbjct 1224 ATTCT-CAGGTGCAGTTGAAGCATTCGCTAGACGGAATGT 1262
> Ahg919122 jgi|Araly1|919122|scaffold_100403.1
Length=1447
Score = 640 bits (346), Expect = 0.0
Identities = 764/960 (80%), Gaps = 51/960 (5%)
Strand=Plus/Plus
Query 344 AAAAGATGGATCACGTTATCGGCGGGAAGTTTAAGTTGGGTA-GGAAGCTTGGAAGTGGA 402
|||| ||||||| || | || || ||||| ||| | || | | ||||||||||||||
Sbjct 17 AAAA-ATGGATCGTGTGGTTGGTGGTAAGTTCAAGCTCGG-ACGTAAGCTTGGAAGTGGT 74
Query 403 TCATTCGGTGAACTTTAT-TTAGGGA-TCAATATTCAAACTGGAGAAGAAGTCGCAGTTA 460
|| || |||||| ||| | || ||| ||||| | ||||||||||||||||| || ||||
Sbjct 75 TCCTTTGGTGAAATTT-TCCTA-GGAGTCAATGTACAAACTGGAGAAGAAGTGGCTGTTA 132
Query 461 AGCTGGAACCTGTGAAGACGAGGCATCCTCAACTGCAGTATGAATCGAAA-ATATATATG 519
| || |||||| | | | ||||||||||| || || || || || ||| | ||||||
Sbjct 133 AACTTGAACCTCTCCGGGCTAGGCATCCTCAGCTTCATTACGAGTC-AAAGCTTTATATG 191
Query 520 TTTCTTCAAGGAGGAACGGGTGTTCCCCATCTGAAATGGTTTGGAGTTGAGGGTGAATAC 579
|||| ||||||||||| ||| |||| || || ||||||||||| ||||||||||||| |
Sbjct 192 CTTCTCCAAGGAGGAACTGGTATTCCTCACCTCAAATGGTTTGGTGTTGAGGGTGAATTC 251
Query 580 AGTTGCATGGTTATCGATCTTCTTGGGCCAAGCT-TGGAGGACTTATTCAATTACTGCAA 638
| || ||||||||||| ||||| || || || | ||||||| || ||||| || ||| |
Sbjct 252 AACTGTATGGTTATCGACCTTCTCGGTCCTAG-TATGGAGGAATTTTTCAACTATTGC-A 309
Query 639 G-CGAATATTTTCA---TTAAAATCTGTTTTAATGCTTGCAGATCA-ATTGATATGTAGA 693
| || || |||| |||| | ||||| ||||||| || ||||| | ||||| ||||
Sbjct 310 GTCG-AT-CCTTCACTCTTAAGA-CTGTTCTAATGCTCGCTGATCAGA-TGATAAATAGA 365
Query 694 GTTGAGTATATGCAT-TCGCG-GGGTTTTCTTCACCGCGATATTAAACCAGACAACTTTT 751
|| |||||||||||| | || ||| |||||||| || ||||| || ||||| |||||||
Sbjct 366 GTCGAGTATATGCATGT-ACGAGGG-TTTCTTCATCGTGATATCAAGCCAGATAACTTTT 423
Query 752 TGATGGGTCTTGGGCGCAGAGCAAACCAGGTGTATATCATTGATTATGGCCTTGCTAAAA 811
||||||||||||| |||| ||||||||||||||| |||||||| || || ||||| || |
Sbjct 424 TGATGGGTCTTGGACGCAAAGCAAACCAGGTGTACATCATTGACTACGGGCTTGCCAAGA 483
Query 812 AATACAAG-GATCTTCAGACACAAAAGCATATACCATACAGGGAAAACAAGAATCTTACA 870
| || || |||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 484 AGTA-TAGAGATCTTCAAACACACAAGCATATTCCATACAGGGAAAACAAGAATCTTACA 542
Query 871 GGAACTGCTCGGTATGCAAGTGTGAACACACACCTTGGGATTGAGCAAAGTAGAAGAGAT 930
||||| ||||| ||||||||||| ||||| || ||||| ||||||||||||||||| |||
Sbjct 543 GGAACAGCTCGATATGCAAGTGTTAACACCCATCTTGGAATTGAGCAAAGTAGAAGGGAT 602
Query 931 GATCTGGAGTCACTTGGTTATGTG-TTGATGTATTTTCTACGAGGAAGTCTTCCGTGGCA 989
|||||||| || ||||| |||||| || ||||||||||| |||||||| ||||| |||||
Sbjct 603 GATCTGGAATCTCTTGGCTATGTGCTT-ATGTATTTTCTTCGAGGAAGCCTTCCTTGGCA 661
Query 990 AGGT-TTAAAAGCTGGTACGAAGAAGCAGAAATATGACAAGATTAGTGAAAAGAAGATG- 1047
||| || || ||||| || |||||||| ||||||||||| ||||||||||| | |
Sbjct 662 AGGCCTTCGT-GCAGGTACCAAAAAGCAGAAGTATGACAAGATCAGTGAAAAGAAAA-GA 719
Query 1048 CTTACTTCTGTAGAGA-C-TCTTTGCAAGTCGTATCCATCAGAGTTCACATCGTACTTCC 1105
|| || | || ||| | ||| | || | | |||| | |||||||||||||| || |
Sbjct 720 CTAACACCAGTGGAGGTCCTCTGTAAAAA-CTT-TCCACCTGAGTTCACATCGTATTTTC 777
Query 1106 AT-TACTGT-CGTTCATTGA-GATTTGAGGACAAACCGGATTATTCATATCTGA-GAAGA 1161
| || ||| |||||||| | | ||||| |||||||| ||||||||||| || | || |
Sbjct 778 -TCTA-TGTGCGTTCATT-ACGGTTTGAAGACAAACCAGATTATTCATACCTAAAGAGG- 833
Query 1162 CTTTTTAGGGATCT-TTTCATTCGTGAAGGTTATCAGCTTGATTATGTGTTTGATTGGAC 1220
||||| || || || ||| || || |||||||||||| |||| ||||| |||||||||||
Sbjct 834 CTTTTCAGAGAACTATTT-ATCCGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGAC 892
Query 1221 AATCTCGAAGTATCCTCAGATT-GGCTCTAGTTCGAGA-CCAAGGCCAACTCCAAGACCA 1278
||| | || |||||| ||| || ||||| ||||| || |||| |||| |||||||||
Sbjct 893 AATATTGAGGTATCCACAG-TTCGGCTCCAGTTCCAGCTCCAATTCCAAA-CCAAGACCA 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73285631380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5