BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14342.1
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493471 jgi|Araly1|493471|fgenesh2_kg.7__2904__AT4G14342.1 652 0.0
Ahg479847 jgi|Araly1|479847|fgenesh2_kg.3__2548__AT3G23325.1 368 2e-101
> Ahg493471 jgi|Araly1|493471|fgenesh2_kg.7__2904__AT4G14342.1
Length=503
Score = 652 bits (353), Expect = 0.0
Identities = 414/442 (94%), Gaps = 9/442 (2%)
Strand=Plus/Plus
Query 56 tcttcttct-tc-ttc-ttc-ttcttctAGTTGCTGCGAAACTCTGAAAAAGATGCAGGC 111
||||||||| || ||| ||| ||||||| |||||||| |||||||||||||||||||||
Sbjct 26 TCTTCTTCTCTCTTTCTTTCTTTCTTCTTCTTGCTGCG-AACTCTGAAAAAGATGCAGGC 84
Query 112 AAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAATATGTTGGAAC 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 85 AAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAATATGTTGGTAC 144
Query 172 CGGTCATGCTGATTTGAGTAGATTTGAGTGGGCTGTGAACATTCAGCGTGATAGTTATGC 231
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 145 AGGGCATGCTGATTTGAGTAGATTTGAGTGGGCTATGAACATTCAGCGTGATAGTTATGC 204
Query 232 TTCATACATTGGTCACTACCCTATGCTTTCATACTTTGCTATTGCTGAGAACGAGTCTAT 291
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 205 TTCATACATTGGTCACTACCCTATGCTTTCATACTTTGCAATTGCGGAGAACGAGTCTAT 264
Query 292 TGGACGAGAACGCTACAATTTCATGCAGAAAATGCTATTACCCTGCGGCCTTCCTCCGGA 351
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 CGGACGCGAACGCTACAATTTCATGCAGAAAATGCTATTACCCTGCGGCCTTCCTCCGGA 324
Query 352 AAGAGAAGAGGAATAGGTGACATGAGGATTCGATTTGTCTTTCAAGTTATCAAGAACTCG 411
||||||||| |||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 325 AAGAGAAGACGAATAGAAGACATGAGGATTCGATTTGTCTTTCTACTTATCAAGAACTCG 384
Query 412 TGTGATGGAATGTTGGTTTGGAGTTTTAAAAACTGTCCA-ATTTGATCTTCTGGTAGAGA 470
| |||||||||||||||||||||||||||| ||||| | ||||||| || |||||||||
Sbjct 385 TATGATGGAATGTTGGTTTGGAGTTTTAAA--CTGTC-AGATTTGATGTTTTGGTAGAGA 441
Query 471 TTTATATGACTGTTAAAAAACA 492
|||||||||||||||||| |||
Sbjct 442 TTTATATGACTGTTAAAACACA 463
> Ahg479847 jgi|Araly1|479847|fgenesh2_kg.3__2548__AT3G23325.1
Length=430
Score = 368 bits (199), Expect = 2e-101
Identities = 250/275 (91%), Gaps = 1/275 (0%)
Strand=Plus/Plus
Query 86 TGCGAAACTCTGAAAAAGATGCAGGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAG 145
|||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 8 TGCG-AACTCTCTGAAAGATGCAGGCAAGTGATAGGTTTAACATAAATTCTCAGCTTGAG 66
Query 146 CATCTTCAAGCTAAATATGTTGGAACCGGTCATGCTGATTTGAGTAGATTTGAGTGGGCT 205
|||||||||||||| |||||||| || |||||||| ||||| || |||||||| ||||||
Sbjct 67 CATCTTCAAGCTAAGTATGTTGGTACTGGTCATGCAGATTTAAGCAGATTTGAATGGGCT 126
Query 206 GTGAACATTCAGCGTGATAGTTATGCTTCATACATTGGTCACTACCCTATGCTTTCATAC 265
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 127 GTGAACATTCAGCGTGATAGCTATGCTTCATACATTGGTCACTACCCGATGCTTTCTTAC 186
Query 266 TTTGCTATTGCTGAGAACGAGTCTATTGGACGAGAACGCTACAATTTCATGCAGAAAATG 325
||||| || ||||||||||| || ||||| || ||||||||||| |||||||||||||||
Sbjct 187 TTTGCAATCGCTGAGAACGAATCCATTGGCCGTGAACGCTACAACTTCATGCAGAAAATG 246
Query 326 CTATTACCCTGCGGCCTTCCTCCGGAAAGAGAAGA 360
|| ||||| |||||||||||||| |||||||||||
Sbjct 247 CTTTTACCTTGCGGCCTTCCTCCAGAAAGAGAAGA 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22149414777
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5