BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14350.1
Length=2327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946955 jgi|Araly1|946955|scaffold_703184.1 2756 0.0
Ahg930357 jgi|Araly1|930357|scaffold_302814.1 1905 0.0
Ahg906859 jgi|Araly1|906859|Al_scaffold_0003_3987 636 0.0
Ahg487812 jgi|Araly1|487812|fgenesh2_kg.6__946__AT5G09890.2 126 6e-28
> Ahg946955 jgi|Araly1|946955|scaffold_703184.1
Length=1696
Score = 2756 bits (1492), Expect = 0.0
Identities = 1633/1701 (96%), Gaps = 9/1701 (1%)
Strand=Plus/Plus
Query 291 AAGCTAAAGGGGAGAGAAATGGAGACTGCCAAAGCTTGGCTGAGTAAGTTAAAATCTAAA 350
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3 AAGCTAAAGGGGAGAGAAATGGAGACTGCCAAAGCTTGGCTGAATAAGTTAAAATCTAAA 62
Query 351 GACAAGGTGAAATCTTCGAAAAAGAAGGAAGCCACAAGTAATGTAAAGGAAGGACCGAAA 410
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 63 GACAAGGTGAAATCTTCGAAAAAGAAGGAAACTACAAGTAATGTAAAGGAAGGACCGAAA 122
Query 411 ACAGCTGGAGGTGAAGAAGCACTTTCAAATATAACTAAGGAGAAGGCTGCTGCTGCAAAA 470
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 123 ACAGCTGGAGGTGAAGAAGCACTTTCAAATATAACTAAGGAGAAGGCTGCTGCTGCTAAA 182
Query 471 CTGTATATTGAAAACCATTACAAAATGCAAATGCAGAGTCTGCAGGAAAGAAAGGAGCGA 530
|| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 183 CTATATATTGAAAATCATTACAAAATGCAAATGCAGAGTCTGCAGGAAAGAAAAGAGCGA 242
Query 531 CGCAAAATGCTAGAGAAAAAATTAGCTGCTGCAGAAGTCTCTGAGGAAGAGCAAAATAAC 590
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 243 CGCAAAATGCTAGAAAAAAAATTAGCTGCTGCAGAAGTCTCTGAGGAAGAGCAGAACAAC 302
Query 591 TTGCTAAAGGATTTGGAGATGAAGGAAACTGAATATATGCGCCGTCAGAGGCATAAAATG 650
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 303 TTGCTAAAGGATTTGGAGATGAAGGAAACTGAATACATGCGCCGTCAGAGACATAAAATG 362
Query 651 GGAGCTGATGACTTTGAGCCATTGACAATGATTGGGAAGGGTGCATTCGGAGAGGTTAGG 710
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 363 GGAGCTGATGACTTCGAGCCATTGACAATGATTGGGAAGGGTGCATTCGGGGAGGTTAGG 422
Query 711 ATCTGTAGGGAGAAGGGAACAGGCAATGTCTATGCAATGAAGAAGCTTAAGAAATCTGAG 770
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 ATATGTAGGGAGAAGGGAACAGGCAATGTCTATGCAATGAAGAAGCTTAAGAAATCTGAG 482
Query 771 ATGCTTCGCAGAGGCCAGGTGGAACATGTAAAAGCAGAGAGAAATTTACTTGCAGAAGTT 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 ATGCTTCGCAGAGGCCAGGTGGAACATGTAAAAGCAGAGAGAAATTTACTTGCAGAAGTT 542
Query 831 GATAGCAATTGCATTGTCAAACTGTATTGTTCTTTCCAAGATGAAGAGTACTTGTATCTC 890
|| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 543 GACAGCAATTGTATTGTCAAACTGTATTGTTCTTTCCAAGATGAGGAGTATTTGTATCTC 602
Query 891 ATAATGGAGTATTTACCTGGTGGGGATATGATGACTTTACTTATGAGGAAAGACACCCTC 950
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ATAATGGAGTATTTACCTGGTGGGGATATGATGACTTTACTTATGAGGAAAGACACCCTT 662
Query 951 ACTGAAGACGAGGCCAGGTTTTATATTGGGGAAACTGTCCTGGCTATTGAGTCCATTCAT 1010
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 ACTGAAGATGAGGCCAGGTTTTATATTGGGGAAACTGTCCTGGCTATTGAGTCCATTCAC 722
Query 1011 AAGCACAACTACATTCACAGAGATATCAAGCCTGATAATCTGCTACTTGACAAAGACGGC 1070
||||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 723 AAGCACAACTATATCCACAGAGATATCAAGCCTGATAATCTACTACTTGACAAAGATGGC 782
Query 1071 CACATGAAATTGTCAGATTTTGGATTATGTAAACCATTAGACTGTAGTAATCTTCAAGAG 1130
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 783 CACATGAAATTGTCAGATTTTGGATTATGTAAACCACTAGACTGTAGTAATCTTCAAGAG 842
Query 1131 AAAGACTTTACAGTTGCAAGAAACGTTAGTGGGGCTTTACAAAGTGATGGTCGCCCTGTG 1190
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 AAAGACTTCACAGTTGCAAGAAACGTTAGTGGGGCTTTACAAAGTGATGGTCGCCCTGTG 902
Query 1191 GCGACAAGACGCACCCAACAAGAGCAATTACTAAACTGGCAGAGAAATAGAAGGATGCTT 1250
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 903 GCGACAAGACGCACCCAACAAGAGCAACTACTAAACTGGCAGAGAAATAGAAGGATGCTT 962
Query 1251 GCTTATTCCACAGTTGGCACTCCTGACTATATTGCCCCAGAAGTTCTGTTGAAAAAAGGA 1310
||||||||||||||||| |||||||| || |||||||||||||||||| ||||||| |||
Sbjct 963 GCTTATTCCACAGTTGGAACTCCTGATTACATTGCCCCAGAAGTTCTGCTGAAAAAGGGA 1022
Query 1311 TATGGAATGGAATGTGATTGGTGGTCTCTTGGCGCCATTATGTATGAAATGCTTGTGGGG 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TATGGAATGGAATGTGATTGGTGGTCTCTTGGCGCCATTATGTATGAAATGCTTGTGGGG 1082
Query 1371 TTTCCGCCCTTTTATTCAGATGACCCAATGACAACTTGTAGGAAGATAGTAAATTGGAGA 1430
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1083 TTTCCGCCATTTTATTCAGATGATCCAATGACAACTTGTAGGAAGATAGTAAATTGGAGA 1142
Query 1431 AATTACTTGAAATTCCCAGATGAGGTTAGACTATCACCAGAAGCCAAGGATCTTATTTGT 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 AATTACTTGAAATTCCCAGATGAGGTTAGACTATCACCAGAAGCCAAGGATCTTATTTGT 1202
Query 1491 AGGCTTTTATGCAATGTTGAACAAAGGCTTGGAACAAAAGGAGCAGATGAAATTAAGGGT 1550
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1203 AGGCTTTTATGCAATGTTGAACAAAGACTTGGAACAAAAGGAGCAGATGAAATTAAGGGT 1262
Query 1551 CACCCTTGGTTTAGAGGCACAGAATGGGGAAAATTGTATCAAATGAAAGCTGCCTTTATT 1610
||||| ||||| ||||| || ||||||||||||||||| |||||||| ||||||||||||
Sbjct 1263 CACCCATGGTTCAGAGGTACCGAATGGGGAAAATTGTACCAAATGAAGGCTGCCTTTATT 1322
Query 1611 CCCCAAGTTAATGATGAGTTGGACACCCAAAATTTTGAGAAATTTGAAGAGACTGACAAG 1670
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1323 CCCCAGGTCAATGATGAGTTAGACACCCAAAATTTTGAGAAATTTGAAGAGACTGACAAG 1382
Query 1671 CAAGTTCCAAAGTC-AGCCAAGTCAGGTCCATGGAGAAAGATGCTCTCATCCAAAGACAT 1729
|||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1383 CAAGTTCCAAAGTCGA-CCAAGTCAGGTCCATGGAGAAAGATGCTCTCATCCAAGGACAT 1441
Query 1730 TAACTTTGTTGGTTATACTTACAAGAACGTAGAAATCGTAAATGATGACCAAATACCAGG 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 TAACTTTGTTGGTTATACTTACAAGAACGTAGAAATCGTAAATGATGACCAAATACCAGG 1501
Query 1790 GATAGCTGAGTTGAAGAAGAAGAGCAATAAGCCAAAAAGGCCGTCTATTAAATCTCTCTT 1849
|||||| ||| ||||||||||||||||||||||||| ||||||| |||||||| |||||
Sbjct 1502 GATAGCCGAGCTGAAGAAGAAGAGCAATAAGCCAAAGCGGCCGTCGATTAAATCCCTCTT 1561
Query 1850 TGAAGACGAAACATCTGGTGGGACAACAACCCACCAAGGAAGCTTTTTGAATCTACTACC 1909
|||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| ||||
Sbjct 1562 TGAAGATGAAACATCTGGTGGGCCAACAACCCACCAAGGAAGCTTCTTGAATCTATTACC 1621
Query 1910 GACGCAGATTGAAGATCCAGAGAAAGAAGGTAGTAAGTCGAGCTCATCCGGGTGAATTTC 1969
||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1622 GACACAGATTGAAGATCCAGAGAAAGAAGGTAGTAAATCGAGCTCATCCGGGTGA-TTT- 1679
Query 1970 ATTTGACACATT-GCACAGCC 1989
| ||||||| ||||||||
Sbjct 1680 A----ACACATTTGCACAGCC 1696
> Ahg930357 jgi|Araly1|930357|scaffold_302814.1
Length=1748
Score = 1905 bits (1031), Expect = 0.0
Identities = 1465/1672 (88%), Gaps = 40/1672 (2%)
Strand=Plus/Plus
Query 309 ATGGAGACTGCCAAAGCTTGGCTGAGTAAGTTAAAATCTA-AAGACAAGGTGAAATCTTC 367
||||| ||||||| ||| ||||||||||||||||| |||| | || |||| |||||| ||
Sbjct 22 ATGGATACTGCCAGAGCATGGCTGAGTAAGTTAAAGTCTATAGGA-AAGGAGAAATCCTC 80
Query 368 GAAAAAGAAGGAAGC--C-ACAAGTAATGTAAAGGAAGGA-CCGAAAACAGCTGGAGGTG 423
||||||||||||| | | | ||||||||| ||||||||| || ||||||| ||||||||
Sbjct 81 GAAAAAGAAGGAAACTTCTAGAAGTAATGTGAAGGAAGGATCC-AAAACAGTTGGAGGTG 139
Query 424 AAGAAGCACTTTCAAATATAACTAAGGAGAAGGCTGCTGCTGCAAAACTGTATATTGAAA 483
||||||| | || ||| |||||||| |||||||||||||||| |||| |||||||||||
Sbjct 140 AAGAAGCTGTGTCTAATGTAACTAAGCAGAAGGCTGCTGCTGCCAAACAGTATATTGAAA 199
Query 484 ACCATTACAAAATGCAAATGCAGAGTCTGCAGGAAAGAAAGGAGCGACGCAAAATGCTAG 543
| |||||||||| ||| | || |||| |||| ||||||| ||||| || | ||||| |
Sbjct 200 ATCATTACAAAAAACAAGTTCAAAGTCAGCAGCAAAGAAAAGAGCGGCGTGATATGCT-G 258
Query 544 AGAAAA-AA-TTAGCTGCTGCAGAAGTCTCTGAGGAAGAGCAAAATAACTTGCTAAAGGA 601
||||| || ||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 259 -GAAAATAAGTTAGCTGCTGCAGAAGTCTCTGAGGAAGAGCAAAAGAATTTGCTCCAGGA 317
Query 602 TTTGGAGATGAAGGAAACTGAATATATGCGCCGTCAGAGGCATAAAATGGGAGCTGATGA 661
||| |||| ||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 318 TTTAGAGAAGAAGGAAACTGAATACATGCGCCGTCAGAGACATAAAATGGGAACTGATGA 377
Query 662 CTTTGAGCCATTGACAATGATTGGGAAGGGTGCATTCGGAGAGGTTAGGATCTGTAGGGA 721
|||||||||||| |||||||| || ||||| || || |||||||||||||| ||||||||
Sbjct 378 CTTTGAGCCATTAACAATGATAGGAAAGGGCGCTTTTGGAGAGGTTAGGATATGTAGGGA 437
Query 722 GAAGGGAACAGGCAATGTCTATGCAATGAAGAAGCTTAAGAAATCTGAGATGCTTCGCAG 781
|||| |||||||||||||||||| ||||| ||||||||||||||||||||||| || ||
Sbjct 438 GAAGACAACAGGCAATGTCTATGCTATGAAAAAGCTTAAGAAATCTGAGATGCTCCGTAG 497
Query 782 AGGCCAGGTGGAACATGTAAAAGCAGAGAGAAATTTACTTGCAGAAGTTGATAGCAATTG 841
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 498 AGGCCAGGTGGAGCATGTGAAAGCAGAGAGAAATTTACTTGCAGAGGTTGATAGCAATTG 557
Query 842 CATTGTCAAACTGTATTGTTCTTTCCAAGATGAAGAGTACTTGTATCTCATAATGGAGTA 901
|||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 558 CATTGTGAAGCTGTATTGTTCTTTCCAAGATGAAGAGTATTTGTATCTTATTATGGAGTA 617
Query 902 TTTACCTGGTGGGGATATGATGACTTTACTTATGAGGAAAGACACCCTCACTGAAGACGA 961
| ||||||| || ||||||||||| ||||||||||||||||| || || |||||||| ||
Sbjct 618 TCTACCTGGAGGAGATATGATGACATTACTTATGAGGAAAGATACACTTACTGAAGATGA 677
Query 962 GGCCAGGTTTTATATTGGGGAAACTGTCCTGGCTATTGAGTCCATTCATAAGCACAACTA 1021
||| || |||||| |||||||||||||| | ||||| |||||||||||||||||||||||
Sbjct 678 GGCAAGATTTTATGTTGGGGAAACTGTCTTAGCTATCGAGTCCATTCATAAGCACAACTA 737
Query 1022 CATTCACAGAGATATCAAGCCTGATAATCTGCTACTTGA-CAAAGACGGCCACATGAAAT 1080
|| |||||||||||||||||||||||||||||||| || | ||| ||||||||||||||
Sbjct 738 TATCCACAGAGATATCAAGCCTGATAATCTGCTACTCGACCGAAG-CGGCCACATGAAAT 796
Query 1081 TGTCAGATTTTGGATTATGTAAACCATTAGACTGTAGTAATCTTCAAGAGAAAGACTTTA 1140
| |||||||||||||||||||| |||||||||||||||| ||| || || ||||| |||
Sbjct 797 TATCAGATTTTGGATTATGTAAGCCATTAGACTGTAGTATTCTCCAGGAAAAAGA-TTT- 854
Query 1141 C--AGTTGCAAGA-AACGTTAGTGGGGCTTTACAAAGTGATGGTCGCCCTGTGGCGA-CA 1196
| |||||| | | ||| ||||||||||| |||||||||| || ||||||||||| | |
Sbjct 855 CGTAGTTGC-ACATAACCTTAGTGGGGCTCTACAAAGTGACGGCCGCCCTGTGGC-ATCG 912
Query 1197 AGACGCA--CCC-AAC-AA--GAGCAATTACTAAACTGGCAGAGAAATAGAAGGATGCTT 1250
||||||| ||| | || || ||| ||| ||||||||||||||||||||||||||||
Sbjct 913 AGACGCACTCCCTCTCAAATGGAACAACTACAAAACTGGCAGAGAAATAGAAGGATGCTT 972
Query 1251 GCTTATTCCACAGTTGGCACTCCTGACTATATTGCCCCAGAAGTTCTGTTGAAAAAAGGA 1310
|||||||| |||||||| ||||||||||||||||| ||||||||| ||||||| ||||||
Sbjct 973 GCTTATTCTACAGTTGGAACTCCTGACTATATTGCTCCAGAAGTTTTGTTGAAGAAAGGA 1032
Query 1311 TATGGAATGGAATGTGATTGGTGGTCTCTTGGCGCCATTATGTATGAAATGCTTGTGGGG 1370
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 1033 TATGGAATGGAATGTGATTGGTGGTCTCTTGGTGCGATCATGTATGAAATGCTTGTGGGG 1092
Query 1371 TTTCCGCCCTTTTATTCAGATGACCCAATGACAACTTGTAGGAAGATAGTAAATTGGAGA 1430
||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1093 TTTCCACCATTTTATTCAGATGAGCCAATGACAACTTGTAGAAAGATAGTAAATTGGAGA 1152
Query 1431 AATTACTTGAAATTCCCAGATGAGGTTAGACTATCACCAGAAGCCAAGGATCTTATTTGT 1490
||||| || |||||||| ||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 1153 AATTATTTAAAATTCCCGGATGAGGTTAGGCTATCACTAGAAGCCAAGGATCTAATTTGT 1212
Query 1491 AGGCTTTTATGCAATGTTGAACAAAGGCTTGGAACAAAAGGAGCAGATGAAATTAAGGGT 1550
|| ||||||||||| || ||||||||| ||||||||||||||||| |||||||||||| |
Sbjct 1213 AGACTTTTATGCAACGTAGAACAAAGGATTGGAACAAAAGGAGCAAATGAAATTAAGGAT 1272
Query 1551 CACCCTTGGTTTAGAGGCA-CAGAATGGGGAAAATTGTATCAAATGAAAGCTGCCTTTAT 1609
||||||||||| ||||| | ||||||| |||||||||||||||||| ||||| |||||
Sbjct 1273 CACCCTTGGTTCAGAGGTGTC-GAATGGGAAAAATTGTATCAAATGAAGGCTGCGTTTAT 1331
Query 1610 TCCCCAAGTTAATGATGAGTTGGACACCCAAAATTTTGAGAAATTTGAAGAGACTGACAA 1669
|||| |||| ||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1332 TCCCAAAGTCAATGACGAGTTGGACACCCAAAATTTCGAAAAATTTGAAGAGACTGACAA 1391
Query 1670 GCAAGTTCCAAAGTCAGCCAAG-TCAGGTCCATGGAGAAAGATGCTCTCATCCAAAGACA 1728
||||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1392 GCAAGTTCCGAAGAC-GCCAAAATCAGGTCCATGGAGAAAGATGCTCTCATCCAAAGACA 1450
Query 1729 TTAACTTTGTTGGTTATACTTACAAGAACGTAGAAATCGTAAATGATGACCAAATACCAG 1788
| |||||||| |||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 1451 TAAACTTTGTGGGTTATACTTACAAGAACGTTGAAATCGTAAATGATGATCAATTACCAG 1510
Query 1789 GGATAGCTGAGTTGAAGAAGAAGAGCA-ATAAGCCAAAAAGGCCGTCTATTAAATCTCTC 1847
| ||||||||| | ||||||||||||| | ||||| || |||| || |||||||| |||
Sbjct 1511 GAATAGCTGAGCTAAAGAAGAAGAGCACA-AAGCCGAAGCGGCCATCAATTAAATCCCTC 1569
Query 1848 TTTGAAGACGAAACATCTGGTGGGACAACAACCCACCAAGGAAGCTTTTTGAATCTACTA 1907
||||| || ||| || | || | || |||| ||||||||||||||| |||| || ||
Sbjct 1570 TTTGAGGATGAATCAGCCAGTAGCACCACAAGCCACCAAGGAAGCTTCATGAAACT-CTT 1628
Query 1908 -CCGAC-GCAGATTGAAGATCCAGAGAAAGAAGGTAGTAAGTCGAGCTCATC 1957
|| || |||||| |||| ||||||||||||||| | || || ||||||||
Sbjct 1629 GCC-ACCGCAGATAGAAGTTCCAGAGAAAGAAGGCA--AA-TCCAGCTCATC 1676
> Ahg906859 jgi|Araly1|906859|Al_scaffold_0003_3987
Length=1701
Score = 636 bits (344), Expect = 0.0
Identities = 1081/1429 (76%), Gaps = 82/1429 (6%)
Strand=Plus/Plus
Query 422 TGAAGAAGCACTTTCAAATA-TAACTAAGGAGAAGGCTGCTGCTGCAAAACTGTATATTG 480
||||||||| ||||||| | | || || |||| | ||| || || || | ||| ||||
Sbjct 120 TGAAGAAGCTGTTTCAAACACT-ACCAAACAGAAAGTTGCAGCAGCTAAGCAGTACATTG 178
Query 481 AAAACCATTACAAA-ATGCAAATGCAGAGTCTGCAGGA-AAGAAAGGAGCGACGCAA-AA 537
| || ||||||||| | || ||| ||| |||||| || | |||| || | || || |
Sbjct 179 AGAATCATTACAAAGA-ACAGATGAAGATTCTGCAAGAGAGGAAA-GAAAGGCG-AAGCA 235
Query 538 TGCTAGAGAAAAAATTAGCTGCTGCAGAAGTCTCTGAGGAAGAGCAAAATAA-CTTGCTA 596
|||||||| | || | || | ||| || |||||||| ||||| |||||||| ||| ||
Sbjct 236 TGCTAGAGCAGAAGCTGGCGGATGCTGATGTCTCTGAAGAAGATCAAAATAATCTT-CTC 294
Query 597 AAGGATT-TGGAGATGAAGGAAACTGAATATATGCGCCGTCAGA-GGCATAAAATGGGAG 654
|| | || |||||| |||||| || || |||||||||| ||| | | ||||| | || |
Sbjct 295 AA-GTTTCTGGAGAAGAAGGAGACAGAGTATATGCGCCTTCA-ACGCCATAAGTTAGGTG 352
Query 655 CTGATGACTTTGA---GCCATTGACAATGATTGGGAAGGGTGCATTCGGAGAGGTTAGGA 711
|| ||| ||||| | | || |||||||||||||| |||||||| || ||||||| ||
Sbjct 353 TTGCTGATTTTGATTTG-C-TT-ACAATGATTGGGAAAGGTGCATTTGGGGAGGTTA-GA 408
Query 712 -TCTGTAGGGAGAAG-GGAACAGG-CAATGTCTATGCAATGAAGAAGCTTAAGAAATCTG 768
| ||||| || ||| | ||||| ||| || ||||||||||| ||||| ||||| | |
Sbjct 409 GTTTGTAGAGAAAAGACG-ACAGGTCAA-GTTTATGCAATGAAAAAGCTCAAGAAGGCGG 466
Query 769 AGATGCTTCGCAGAGGCCAGGTGGAACATGTAAAAGCAGAGAGAAATTTACTTGCAGAAG 828
|||||||||||||||||||||| |||||||| | ||||||||| || |||||||| ||||
Sbjct 467 AGATGCTTCGCAGAGGCCAGGTTGAACATGTGAGAGCAGAGAGGAACTTACTTGCCGAAG 526
Query 829 TTGATAGCAATTGCATTGTCAAACTGTATTGTTC-TTTCCAAGATGAAGAGTA-CTTGTA 886
| || || || | ||| || || || || ||||| ||| |||||||| || | ||| ||
Sbjct 527 TGGACAGTAACTACATAGTGAAGCTCTACTGTTCATTT-CAAGATGATGACCATCTT-TA 584
Query 887 TCTCATAATGGAGTATTTACCTGGTGGGGATATGATGACTTTACTTATGAGGAAAGACAC 946
|| | ||||||||||| ||||||||||||||||||||| | || ||| | ||||| ||
Sbjct 585 CCTTGTGATGGAGTATTTGCCTGGTGGGGATATGATGACTCTGCTGATGCGCAAAGATAC 644
Query 947 CCTCACTGAAGACGAGGCCAGGTTTTATATTGGGGAAACTGTCCTGGCTATTGAGTCCAT 1006
| || ||||| ||||||| ||| ||| | | || || || || || || ||||||||
Sbjct 645 TTTGACAGAAGAGGAGGCCAAGTTCTATGTCGCTGAGACAGTTCTCGCCATCGAGTCCAT 704
Query 1007 TCATAAGCACAACTACATTCACAGAGATATCAAGCCTGATAATCT-GCTACTTGACAAAG 1065
|| | |||||||||||||||||||||||||||||| ||||| || ||| ||||||| |
Sbjct 705 CCACAGGCACAACTACATTCACAGAGATATCAAGCCAGATAA-CTTGCTGCTTGACAGAT 763
Query 1066 ACGGCCA-C-ATGAAATTGTCAGATTTTGGATTATGTAAACCATTAGACTGTAGTAATC- 1122
| || || | | || || |||||||||||||| |||||||| || ||||| ||| |
Sbjct 764 ATGGGCATCTAAGAC-TT-TCAGATTTTGGATTGTGTAAACCTTTGGACTGCAGTGC-CA 820
Query 1123 TTCAAGAGAAAGACTTT--A--CAGTTGCAA-GAAACGTTAGTGGGGCTTTACAAAGTGA 1177
|| |||||| || ||| | || || ||| | | | | | || || | | || |
Sbjct 821 TTGGAGAGAACGATTTTTCAAACAATTCCAATGGATC-T-AC-GGAGC---A-AGAG-GC 872
Query 1178 TGG-TCGCCCTG-TGGCGACAAGACGCACCCAACAAGAGCAATTACTAAAC-T-GGCAGA 1233
||| || | || | | | || |||||| || || || ||| | | ||| | ||||||
Sbjct 873 TGGATCAAC-TGCTC-C-A-AA-ACGCACACAGCAGGAACAACT--TGAACATTGGCAGA 925
Query 1234 GAAATAGAAGGATGCTTGCTTATTCCACAGTTGGCACTCCTGACTATATTGCCCCAGAAG 1293
| || ||||| | ||| |||||||| ||||||||||| || || || || || |||||||
Sbjct 926 GGAACAGAAGAACGCTAGCTTATTCTACAGTTGGCACACCAGATTACATAGCTCCAGAAG 985
Query 1294 TTCTGTTGAAAAAAGGATATGGAATGGAATGTGATTGGTGGTCTCTTGGCGCCATTATGT 1353
|||||||||| ||||| ||||||||||| ||||| |||||||||||||| || || ||||
Sbjct 986 TTCTGTTGAAGAAAGGCTATGGAATGGAGTGTGACTGGTGGTCTCTTGGAGCTATAATGT 1045
Query 1354 ATGAAATGCTTGTGGGGTTTCCGCCCTTTTATTCAGATGACCCAATGACAACTTGTAGGA 1413
| |||||||| || || | ||| || |||||||||||||| || ||| |||| ||||| |
Sbjct 1046 ACGAAATGCTAGTAGGATATCCACCGTTTTATTCAGATGATCCTATGTCAACCTGTAGAA 1105
Query 1414 AGATAGTAAATTGGAGAAATT-ACTTGAAATTCCCAGATGAGGTTAGACTATCACCAGAA 1472
|||||||||| |||| ||| | | ||||| || ||||| || | | | | ||| |||
Sbjct 1106 AGATAGTAAACTGGA-AAAGTCATTTGAAGTTTCCAGAGGAAGCAATATTGTCAAGGGAA 1164
Query 1473 GCCAAGGATCTTATTTGTAGGCTTTTATGCAATGTT-GAACAAAGGCTTGGAACAAAAGG 1531
|| |||||||||||| || || || |||| ||| || | |||||||| | |||||
Sbjct 1165 GCAAAGGATCTTATTAACAGTCTGTTGTGCAGTGTCAGA-CGTAGGCTTGGTTCCAAAGG 1223
Query 1532 AGCAGATGAAATTAAGGGTCACCCTTGGTTT-AGAG-GCACAGAATGGGGA-A-AATTGT 1587
|| |||||||| |||| |||||| |||||| | | | | || |||| | | ||| |
Sbjct 1224 TGCTGATGAAATAAAGGCTCACCCATGGTTTGAAACTGT-C-GATTGGG-ATACAATA-T 1279
Query 1588 ATCAA-ATGAAAGCTGCCTTTATTCCCCAAGTTAATGATGAGTTGGACACCCAAAATTTT 1646
|| | ||| | || || ||| |||| | || ||||| || || ||||| || ||||||
Sbjct 1280 -TCGATATGGATGCAGCTTTTGTTCCAGAGGTCAATGACGATTTAGACACTCAGAATTTT 1338
Query 1647 GAGAAATTTGAAGAGACTGACAA-GCAAGTTCCA-A-AGTCAGCCAAGTCAGGTCCATGG 1703
||||| ||||| ||| |||| | |||| || | | | ||| ||||||| || ||||||
Sbjct 1339 GAGAAGTTTGACGAGTCTGA-ATCGCAAACTC-AGACA-TCATCCAAGTCTGGCCCATGG 1395
Query 1704 AGAAAGATGCTCTCATCCAAAGACATTAACTTTGTTGGTTATACTTACAAGAACGTAGAA 1763
|| |||||| | || || |||||||| ||||| || || ||||| ||||||||| | ||
Sbjct 1396 AGGAAGATGTTGTCGTCAAAAGACATAAACTTCGTAGGGTATACGTACAAGAACTTTGAG 1455
Query 1764 ATCGTAAATGATGACCAAATACCAGGGATAGCTGAGTTGAAGAAGAAGA 1812
|| || |||||| ||||| | || || || || ||||||||||||||||
Sbjct 1456 ATTGTTAATGATTACCAAGTTCCTGGAATGGCGGAGTTGAAGAAGAAGA 1504
> Ahg487812 jgi|Araly1|487812|fgenesh2_kg.6__946__AT5G09890.2
Length=1988
Score = 126 bits (68), Expect = 6e-28
Identities = 160/203 (79%), Gaps = 12/203 (6%)
Strand=Plus/Plus
Query 1251 GCTTATTCCACAGTTGGCACTCCT-GACTATATTGCCCCAGAAGTTCTGTTGAAA-AAAG 1308
|||||||| || ||||| ||| || || || || || |||||||| ||| | ||| ||||
Sbjct 1077 GCTTATTCAACCGTTGGAACT-CTGGATTACATGGCTCCAGAAGTACTGCT-AAAGAAAG 1134
Query 1309 GATATGGAATGGAATGTGATTGGTGGTCTCTTGGCGCCATTATGTATGAAATGCTT-GTG 1367
||||||||||||||||||||||||||||||| || || ||| ||||||| ||| || ||
Sbjct 1135 GATATGGAATGGAATGTGATTGGTGGTCTCTCGGTGCAATTTTGTATGAGATG-TTAGTT 1193
Query 1368 GGGTTTCCGCCCTTT-TATTCAGATGACCCAA-TGACAACTTGTAGGAAGATAGTAAATT 1425
|||| ||| ||| || | ||| |||||||| | | ||| || | |||||| | ||||
Sbjct 1194 GGGTATCC-CCCATTCTGTTCTGATGACCCCCGT-ATAACATGCCGCAAGATAATTAATT 1251
Query 1426 GGAGAA-ATTACTTGAAATTCCC 1447
|||| || ||||||||||||
Sbjct 1252 GGAGGGTATG-CTTGAAATTCCC 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87645653745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5