BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14365.1
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493466 jgi|Araly1|493466|fgenesh2_kg.7__2899__AT4G14365.1 1655 0.0
Ahg930354 jgi|Araly1|930354|scaffold_302811.1 508 3e-143
> Ahg493466 jgi|Araly1|493466|fgenesh2_kg.7__2899__AT4G14365.1
Length=1299
Score = 1655 bits (896), Expect = 0.0
Identities = 1164/1287 (90%), Gaps = 44/1287 (3%)
Strand=Plus/Plus
Query 14 TATAAAATAGATCTTGACTTTCTTCTTCTCCTATCTAAGTTCAATTCATTTGATATTCCT 73
|||| |||||||||||| ||||||||||| ||||||||||||||||| | |
Sbjct 1 TATATAATAGATCTTGATTTTCTTCTTCTTCTATCTAAGTTCAATTC-------A----T 49
Query 74 TCTAAAAATGGGGCAACAACAATCACAGTCCAAGGATGAGATGCTGTTTCAAGAAGTGAG 133
| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 50 T-TAAAAATGGGGCAACAACAATCACAAACCAAGGATGAGATATTGTTTCAAGAAGTGAG 108
Query 134 TAACAACAACGTCGAAGGTATCAAATCACTTCACCATGAAGGAGCAGGACTCGAGGGGGT 193
||||||||||||||||||||||||||| ||| || |||||| |||||||||||||||||
Sbjct 109 TAACAACAACGTCGAAGGTATCAAATCGCTTTGCCGTGAAGGTGCAGGACTCGAGGGGGT 168
Query 194 GGATAAATTAGGGAGAACACCATTAATCTTAGCTTGTACGA-ACGACGATCTATATGATG 252
|||||| |||||||||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 169 GGATAAGTTAGGGAGAACACCATTAATCTTAGCTTGTAC-AGACGATGATCTATATGATG 227
Query 253 TAGCAAAAACTCTGCTTGAGTTGGGCTCCAATGTCAATGCTTATCGTTCTGGTTGCAATG 312
|| |||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 228 TAACAAAAACTCTGCTTGAGTTGGGTTCCAATGTCAATGCCTATCGTTCCGGTTGCAATG 287
Query 313 GTGGGACTCCTCTGCACCATGCTGCAAAAAGAGGTCTCGTACACACGGTTAAGTTACTTC 372
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 288 GTGGGACTCCTCTGCACCATGCTGCAAGAAGAGGTCTCGTACACACGGTTAAGTTACTTC 347
Query 373 TGTCTCACGGTGCAAATCCATTGGTTCTTGATGATGATGTTAAGACAGCTCTCGAGGTTG 432
|||||||||||||||| || || ||||||||||||| || |||| |||||||||||||
Sbjct 348 TGTCTCACGGTGCAAAACCCCTGATTCTTGATGATGAAATTCAGACGGCTCTCGAGGTTG 407
Query 433 CTAGAGA-TGAAGGTTACAGTAATGTCGTACGCGCAATCGAGAGTCATATCTGCTTGTTC 491
||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 408 CTAGA-ACTGAAGGTTACAGTAATGTTGTACGCGCAATCGAGAGTCATATCTGCTTGTTC 466
Query 492 TCTGGTTGTATGCGTGAGTATTCTGGCTCCAGCTTGCTT-AATTTATTTGCTCCTCAGCT 550
||||||||||||||||||| || |||| ||||||| ||| || | ||||||||||| |||
Sbjct 467 TCTGGTTGTATGCGTGAGTTTTATGGCCCCAGCTTTCTTGAA-TCATTTGCTCCTCGGCT 525
Query 551 TCTTTCAAGAAAAGTATGGGTAGTTGTCGTACCAACTGGTTCAAGAAACCCTACAAAGCC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TCTTTCAAGAAAAGTATGGGTAGTTGTCGTACCAACTGGTTCAAGAAACCCTACAAAGCC 585
Query 611 TTTAAAGTTGGAGTTGGTTCTGTATGATAGTATTCAGGATGCACAACCAAGAATGGTGAT 670
||||||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 586 TTTAAAGTTGGAGTTGGCTGTGTATGATAGTCTTCAGGATGCACAACCAAGGATGGTGAT 645
Query 671 ACCTTTGTGGAAAGCAAACTTAGAGGAACCAAAATCATTTCGGTGTGATGATTCAGTGAT 730
|||||||||||| ||||| |||||||||||||||| || || |||||||| |||||
Sbjct 646 GGATTTGTGGAAAGCTAACTTGGAGGAACCAAAATCATATCAGTCTGATGATTTGGTGAT 705
Query 731 GATTATTGATGACTCCAGAAGTCCAAAGTCCATGAGGCAGAGAAGAGAAAGCGGATTCAT 790
|||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 706 GATTATTGATAACTCCAAAAGTCCAAGGTGCATGAGGCAGAGAAGAGAAAGCGGATTCAT 765
Query 791 TTCTCAGGCGAGGCGTTGGGCTCAAGTCGATAGACAAATACGTCTTAAGCTAGCAGCTGA 850
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 766 TTCTCAAGCGAGGCGTTGGGCTCAAGTCGATAGACAAATACGTCTTAAGCTGGCAGCTGA 825
Query 851 GATCAAAGGCGACATGAAACAGATGAATTGGTTTTCTGAGGCATGTAAAGGAGTTCCACA 910
||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 826 GATCAAAGGTGACATGAAACAGTTAAATTGGTTTTCTGAGGCATGTAAAGGAGTTCCACA 885
Query 911 GCCAATGAATCCTCCAAGGTTTATGAAAACATCTCAAGCAACAACAACAACAACCAATGT 970
||||||||||||| ||| ||||||||||||||||||| | |||| ||| |||
Sbjct 886 GCCAATGAATCCTTCAATGTTTATGAAAACATCTCAA--A-CAAC--CAA-------TGT 933
Query 971 TCCTGCACT-AAGTGATGATGCTTTGACTCGTGTCGCCATGTCACTTCCTTCTCCAAAAA 1029
|||| || | ||| ||||| | |||||| | ||||| ||| |||||||||||| ||||||
Sbjct 934 TCCT-CAATTAAGAGATGACGATTTGACACATGTCGACATCTCACTTCCTTCTGCAAAAA 992
Query 1030 CTGCGAATAAAGAAGATGGACTGTGTGTGATTTGTGTGGATGCACCATCTGAAGCAGTGT 1089
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TTGAGAATAAAGAAGATGGACTGTGTGTGATTTGTGTGGATGCACCATCTGAAGCAGTGT 1052
Query 1090 GTGTGCCGTGTGGACATGTCGCCGGATGCATTTCTTGCTTGAAAGAGATTGAAAACAAGA 1149
||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 1053 GTGTGCCGTGTGGACATGTCGCCGGATGCATTTCTTGTTTGAAAGATATTAAAAACAAGA 1112
Query 1150 AAATGGGATGTCCTGTTTGTCGCGCCAACATTGATCAGGTCATTAAGCTATATCATGTTT 1209
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1113 AAATGGGATGTCCGGTTTGTCGCGCCAACATCGATCAGGTCATTAAGCTATACCATGTTT 1172
Query 1210 GAAG--------CATATCTCCTCTATGGCTGGAAGATA-TTGAAACTATCTCCTATTTTT 1260
|||| |||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 1173 GAAGGAAAGGATCATATCTCTTCTATGGCTGGAAGA-AGTTGAAACTATCTCCTATTTTT 1231
Query 1261 TACTTTGTCTTTAAAAGATAACTACAA 1287
| || |||||| ||||||||||||||
Sbjct 1232 TG-TT-GTCTTTGAAAGATAACTACAA 1256
> Ahg930354 jgi|Araly1|930354|scaffold_302811.1
Length=1429
Score = 508 bits (275), Expect = 3e-143
Identities = 653/830 (79%), Gaps = 47/830 (6%)
Strand=Plus/Plus
Query 115 TGCTGTTTCAAG-AAGTGAGTAACAACAACGTC-GAAGGTA-TCAAATCACTTCA-CCAT 170
|||||| || || |||||||| | ||| || ||||| | || || | ||||| | |
Sbjct 49 TGCTGTATC-AGCAAGTGAGTTATGGTAAC-TCTGAAGGAATTCGAA-CTCTTCATCGA- 104
Query 171 GAAGGAGCAGGA-CTCGAGGGGGTGGATAAATTAGGGAGAACACCATTAATCTTAGCTTG 229
|| || ||| || || ||| || |||||| | ||| | ||| | || ||||| |||||
Sbjct 105 GATGGTGCA-GACCTTGAGTGGATGGATAGAGAAGGAAAAACTGCGTTGATCTTGGCTTG 163
Query 230 TACGAACGAC-GATCTATATGATGTAGCAAAAACTCTGCTTGAGTTGGGCTCCAATGTCA 288
|| |||| | || ||||||||||| || |||||| || ||||| |||| || ||||| |
Sbjct 164 TATGAAC-TCGGAGCTATATGATGTTGCTAAAACTTTGATTGAGCTGGGTTCTAATGTTA 222
Query 289 ATGCTTATCGTTCTGGTTG-CAATGGTGGGACTCCTCTGCACCATGCTGCAAAAAGAGGT 347
||||||||||| ||||| | | ||| ||||||||||||||||||||||||||||||||||
Sbjct 223 ATGCTTATCGTCCTGGTCGTC-ATGCTGGGACTCCTCTGCACCATGCTGCAAAAAGAGGT 281
Query 348 CTCGTACA-CACGGTTAAGTTACTTCTGTCTCACGGTGCAAATCCA-TTGGTTCTTGATG 405
|| | | | || |||||||||||||| || ||||||||||||||| ||| |||| |||
Sbjct 282 CTTG-AGAACATTGTTAAGTTACTTCTTTCGCACGGTGCAAATCCACTTG-TTCTCAATG 339
Query 406 ATGAT-GTTAAGACAGCTCTCGAGGTTGCTAGAGATGAA-GG-TTACAGTAATGTCGTAC 462
||||| || | |||| | || ||||||||||||| | || || || ||| ||||||||||
Sbjct 340 ATGATTGTCA-GACACCACTTGAGGTTGCTAGAG-TCAAAGGGTT-CAGCAATGTCGTAC 396
Query 463 GCGCAATCGAGAGTCATATCTGCTTGTTCTCTGGTTGTATGCGTGAGTATT-CTGGCTCC 521
| ||||| |||| || |||||||||||||| ||||| ||||| || | || | ||| ||
Sbjct 397 GTGCAATTGAGAAACACATCTGCTTGTTCTCGGGTTGGATGCGGGAATTTTAC-GGC-CC 454
Query 522 -AGCTTGCTTAATTTATTTGCTCCTCAGCTTCTTTCAAGAAAAGTATGGGTAGTTGTCGT 580
| ||| || | ||||||||||| |||||||||||||||| |||||||||||| | ||
Sbjct 455 TACCTTTCTCGACTTATTTGCTCCGCAGCTTCTTTCAAGAAGAGTATGGGTAGTCATTGT 514
Query 581 ACCAACTGGTTCAAGAAACCCTACAAAGCCTTT-AAAGTTGGAGTTGGTTCTGTATGATA 639
||| ||||||||||||||||||||||||||||| ||| |||||| ||||| |||||| ||
Sbjct 515 ACCTACTGGTTCAAGAAACCCTACAAAGCCTTTCAAA-TTGGAGCTGGTTGTGTATGCTA 573
Query 640 GTATTCAGGATGCACAACCAAGAATGGTGATACCTTTGTGGAAAGCAAACTTAGAGGAAC 699
|| | |||||||| || ||| | | | |||| ||||||||||||||||||||||| ||||
Sbjct 574 GTCTGCAGGATGCGCAGCCACGCACGATGATGCCTTTGTGGAAAGCAAACTTAGAAGAAC 633
Query 700 CAAAATCATTTCGGTGTGATGA-TTCAGTGATGATTATTGATGACTCCAGAAGTCCAAAG 758
||||| || | || ||| | |||||||||||| ||||| |||||| || ||| |||
Sbjct 634 CAAAAGCAAAGCAGTCCGAT-ACTTCAGTGATGATCGTTGATAACTCCACAA-TCCCAAG 691
Query 759 TC-CATGAGGCAGAGAAGAGAAAGCGGAT-T-CATTTCTCA-GGCGAGGCGTTGGGCTCA 814
| || || | ||| || ||| | || | | | || || || ||| ||| || ||||
Sbjct 692 CCGCAGGATGAAGA-AAC-GAA-G-GG-TCTGCGCCTCCCACGG-GAGACGTAGGCCTCA 745
Query 815 AGTCGATAGACAAATACGTCTTAAGCTAGCAGCTGAGA-TCAAAGGCGACATGA-AACAG 872
||| | ||| |||| ||| ||||| || ||| ||| || | || || |||| | |||||
Sbjct 746 AGTAGTTAGGCAAACACGACTTAAACTCGCACCTGCGACTGAA-GGTGACA-GCCAACAG 803
Query 873 ATGAATTGGTTTTCTGAGGCATGTAAAGGAGTTCCACAGCCAATGAATCC 922
|||| ||||||| ||| |||||||||||| |||||||||| ||| ||||
Sbjct 804 CTGAAGTGGTTTTGTGATGCATGTAAAGGAATTCCACAGCCGATGCATCC 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5