BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14368.1
Length=3430
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493465 jgi|Araly1|493465|fgenesh2_kg.7__2898__AT4G14370.1 1943 0.0
Ahg319046 jgi|Araly1|319046|fgenesh1_pm.C_scaffold_3002062 1635 0.0
> Ahg493465 jgi|Araly1|493465|fgenesh2_kg.7__2898__AT4G14370.1
Length=5602
Score = 1943 bits (1052), Expect = 0.0
Identities = 1245/1334 (93%), Gaps = 29/1334 (2%)
Strand=Plus/Plus
Query 1855 GCTGATCAATCTGTTTGTTCTGGTTGTCGTCAAGCATTTGGTTTTACGAGAAAGAGGCAT 1914
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 4240 GCTGATCAATCAGTTTGCTCTGGTTGTCGTCAAGCATTTGGTTTTACAAGAAAGAGGCAT 4299
Query 1915 AATTGTTATAACTGCGGTTTAGTGCATTGCCATGCGTGTAGTTCCAAGAAAGCTTTGAAA 1974
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 4300 AATTGCTATAACTGCGGTTTAGTGCATTGTCATGCTTGTAGTTCCAAGAAAGCTTTGAAA 4359
Query 1975 GCAGCATTAGCTCCAACTCCAGGGAAACCACATCGAGTATGTGATGCTTGTTACACAAAA 2034
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 4360 GCAGCATTAGCTCCAACACCAGGGAAGCCACATCGAGTATGTGATGCTTGTTACACAAAA 4419
Query 2035 CTTAAAGCTGGAGAGTCTGGTTATAACTCTAATGTTGCTAATAGAAATTCCACAACTCCT 2094
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 4420 CTTAAAGCTGGAGAGTCTGGTTATAACTCTAATGTTGCTAACAGAAATTCCAC-A----- 4473
Query 2095 ACACGGTCACTAGATGGGACAGG-AAGACCAGACAGAGATATAAGGTCTTCAAGGATTCT 2153
|| ||||||||||||||| | || ||||||||||||||||||||||| |||| |||| |
Sbjct 4474 ACGCGGTCACTAGATGGGTC-GGTCAGACCAGACAGAGATATAAGGTCGTCAAAGATTTT 4532
Query 2154 ACTGTCCCCCAAAACAGAACCAGTCAAGTATTCTGAGGTTAGGTCATCAAGATCTGAATC 2213
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 4533 ACTGTCCCCAAAAACAGAACCAGTCAAGTATTCTGAGGTTAGATCATCAAGATCTGAATC 4592
Query 2214 TTCTATTGTCAGAGCTTCACAAGTTCCAGCTCTCCAGCAACTTAGAGATGTTGCATTCCC 2273
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 4593 TTCTATTGTCAGAGCTTCACAAGTTCCAGCTCTCCAGCAACTTAGAGATGTCGCATTCCC 4652
Query 2274 AAGCTCTCTTAGCGCGATTCAAAATGCCTTTAAACCCGTTGCCTCATCTTCGACATCGAC 2333
|||||| ||||||||||||||||||||||| ||||||| ||||||| |||||||||||||
Sbjct 4653 AAGCTCGCTTAGCGCGATTCAAAATGCCTTGAAACCCGCTGCCTCAACTTCGACATCGAC 4712
Query 2334 AC-TTCCTTCGGGTACAAGATCATCAAGAATATCAAGCCCTCCACGCAGTTCTGGATTTT 2392
|| |||| || |||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 4713 ACTTTCC-TCAGGTATAAGATCATCAAGAAGATCAAGCCCTCCACGTAGTTCTGGATTTT 4771
Query 2393 CCAGGGGCATGATTGATACTTTGAAGAAATCTAACGGTGTTATAAACAAAGAAATGACAA 2452
||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 4772 CCAGGAGCATGATTGACACTTTGAAGAAATCAAACGGTGTTATAAACAAAGAAATGACAA 4831
Query 2453 AATTGCAAAGCCAGATTAAAAATTTGAAAGAGAAATGTGATAATCAAGGTACAGAGATCC 2512
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4832 GATTGCAAAGCCAGATTAAAAATTTGAAAGAGAAATGTGATAATCAAGGTACAGAGATCC 4891
Query 2513 AAAGACTAAAGAAAACAGCAAGAGAAGCTTCTGACTTAGCTGTAAAACATTCTTCAAAGC 2572
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 4892 AAAGATTAAAGAAAACAGCAAGAGAAGCTTCTGACTTAGCTGTAAAACATTCTTCGAAGC 4951
Query 2573 ATAAGGCAGCAACAGAGGTCATGAAATCTGTCGCTGAACATTTGAGAGAGTTAAAAGAGA 2632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4952 ATAAGGCAGCAACAGAGGTCATGAAATCTGTCGCTGAACATTTGAGAGAGTTAAAAGAGA 5011
Query 2633 AACTACCTCCTGAAGTATCAAGATGTGAAGCTTTTGAATCCATGAATTCTCAAGCAGAAG 2692
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 5012 AACTACCTCCTGAAGTATCTGGATGTGAAGCTTTTGAATCCATGAACTCTCAAGCAGAAG 5071
Query 2693 CCTATCTAAATGCGAGCGAAGCATCTGAATCATGTTTACCTACAACATCCT-TGGGAATG 2751
| |||||||| ||||| |||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 5072 CTTATCTAAACGCGAGTGAAGCATCTGAATCATCTTTACCTACAACATC-TGTGGGAATG 5130
Query 2752 GGTCAACGAGATCCAACCCCTTCTACAAACACACAAGATCAAAACATAGAGGAAAAACAA 2811
||||||| ||| |||||||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct 5131 GGTCAACAAGACCCAACCCCTTCTGCAAACACACAAGATCAAAACATAGAAGAAAAACCA 5190
Query 2812 TCATCTAATGGAGGTAACATGAGATCTCAAGAACCTTCAGGGACAACAGAAGCTTCATCA 2871
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 5191 TCATCCAATGGAGGTAACATGAGGTCTCAAGAACCTTCAGGGACAACAGAAGCTTCATCA 5250
Query 2872 TCGTCTAAAGGAGGAGGGAAAGAACTTATCGAACAATTTGAACCGGGTGTTTATGTTACT 2931
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 5251 TCATCTAAAGGAGGAGGCAAAGAACTTATCGAACAATTTGAACCCGGTGTTTATGTTACT 5310
Query 2932 TATGTATTGCACAAGAATGGCGGAAAGATATTTAGAAGAGTTAGATTCAGTTTCTTTGTA 2991
|||||||||||||| ||||| |||||||| |||||||||||||||||||| | |
Sbjct 5311 TATGTATTGCACAAAAATGGTGGAAAGATCTTTAGAAGAGTTAGATTCAG---C-----A 5362
Query 2992 GCAAACGGAGATTTGATGAGCATCAAGCAGAAGAATGGTGGAATAGCAAAAAAGATAGGT 3051
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5363 --AA-CGGAGATTTGATGAGCATCAAGCAGAAGAATGGTGGAATAGCAAAAAAGATAGGT 5419
Query 3052 TGCTTAAGAGGTATAGTCATCATGCTTCATCATCGAGTCCAACGGCTTCTGATTCAGTTC 3111
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct 5420 TGCTTAAGAGGTATAGTCATCATGCTTCATCATCAAGTCCAACGGCTTCTGATCCTGTTC 5479
Query 3112 CAACACCAACTCAACCTCAACCACCAGCTTCTGATTCAGTTCCTACACCAACTCAACCTC 3171
| ||||||||||||||||||| |||||||||| | || | | ||||||||||||||
Sbjct 5480 CTACACCAACTCAACCTCAACGACCAGCTTCTCCTACA---C--A-ACCAACTCAACCTC 5533
Query 3172 AACCACCAGCTTCT 3185
||||||||||||||
Sbjct 5534 AACCACCAGCTTCT 5547
Score = 1565 bits (847), Expect = 0.0
Identities = 941/987 (95%), Gaps = 4/987 (0%)
Strand=Plus/Plus
Query 823 ATAGCTTGCGGTGTAAGGCATATCGCTCTTGTGACAAGACAAGGTGAAGTCTTTACATGG 882
||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 3256 ATAGCTTGCGGGGTAAGGCACATCGCTCTTGTAACAAGACAAGGTGAAGTCTTTACATGG 3315
Query 883 GAAGAAGAAGCTGGAGGAAGGCTTGGACATGGTATTCAAGTCGACGTTTGTCGTCCAAAA 942
| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3316 GGAGAGGAAGCTGGAGGAAGGCTTGGACATGGTATTCAAGTCGACGTAAGTCGTCCAAAA 3375
Query 943 CTTGTTGAGTTTCTTGCTCTTACCAATATAGATTTTGTTGCTTGTGGAGAATATCATACT 1002
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 3376 CTTGTTGAGTTTCTTGCTCTTACCAACATAGATTTTGTTGCATGTGGAGAATATCATACG 3435
Query 1003 TGTGCTGTATCTACGTCCGGAGATTTGTTTACTTGGGGAGATGGAATCCATAATGTTGGA 1062
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3436 TGTGCTGTTTCTACATCCGGAGATTTGTTTACTTGGGGAGACGGAATCCATAATGTTGGA 3495
Query 1063 CTTTTGGGACATGGAAGTGATCTTAGTCATTGGATACCGAAAAGAGTCTCTGGTCCTGTG 1122
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3496 CTTTTGGGACATGGAAGTGATCTTAGTCATTGGATACCAAAAAGAGTCTCTGGTCCTGTT 3555
Query 1123 GAAGGACTTCAAGTCTTGTCTGTTGCGTGTGGCACGTGGCATTCCGCGCTTGCGACTGCT 1182
||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 3556 GAAGGACTTCAGGTTTTGTCTGTTGCGTGTGGCACGTGGCATTCGGCGCTTGCAACTGCT 3615
Query 1183 AATGGAAAACTATTCACTTTTGGTGATGGAGCGTTTGGTGTTCTTGGACATGGAGATAGA 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3616 AATGGAAAACTATTCACTTTTGGTGATGGAGCGTTTGGTGTTCTTGGACATGGAGATAGA 3675
Query 1243 GAGAGTGTTTCATACCCTAAAGAAGTGAAAATGTTGAGTGGTCTTAAAACCTTGAAAGTA 1302
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 3676 GAGAGTGTTTCATACCCTAAAGAAGTAAAAATGTTGAGTGGTCTTAAAACCATGAAAGTA 3735
Query 1303 GCTTGTGGCGTGTGGCATACGGTAGCTATAGTTGAAGTTATGAATCAGACCGGTACTAGT 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3736 GCTTGTGGCGTGTGGCATACGGTAGCTATAGTTGAAGTTATGAATCAGACCGGTACTAGT 3795
Query 1363 ACCTCATCTAGAAAGTTGTTTACTTGGGGCGATGGTGATAAAAACAGGCTAGGACATGGA 1422
| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3796 ATGTCATCTAAAAAGTTGTTTACTTGGGGTGATGGTGATAAAAACAGGCTAGGACATGGA 3855
Query 1423 AATAAAGAGACTTATCTT-CTTCCAACTTGTGTATCTTCACTAATTGACTACAACTTT-A 1480
||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||| |
Sbjct 3856 AATAAAGAGACTTAT-TTACTTCCCACTTGTGTCTCTTCACTAATTGACTACAACTTTCA 3914
Query 1481 ACCAAATCGCGTGTGGTCATACATTCACAGTTGCGCTCACAACCTCAGGACATGTTTTTA 1540
|| |||| || |||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 3915 AC-AAATAGCTTGTGGTCATACATTGACAGTTGCACTCACAACCTCAGGACATGTTTTCA 3973
Query 1541 CTATGGGAGGGACTTCACATGGTCAGCTTGGTAGCTCGAATTCTGATGGTAAACTGCCTT 1600
|||||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||
Sbjct 3974 CTATGGGAGGGACTTCACATGGTCAGCTCGGTAGCTCAAATTCGGATGGTAAATTGCCTT 4033
Query 1601 GCTTGGTTCAAGATCGATTGGTTGGTGAATTCGTTGAAGAAATATCATGTGGGGATCATC 1660
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 4034 GCTTGGTTCAAGATCGATTGGTTGGTGAATTCGTTGAAGAAATATCTTGTGGGGATCATC 4093
Query 1661 ATGTTGCTGTCCTGACATCGAGAAGTGAAGTCTTTACTTGGGGAAAAGGTTCAAATGGAA 1720
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 4094 ATGTTGCTGTCCTGACATCTAGAAGTGAAGTCTTCACTTGGGGAAAAGGTTCAAATGGAA 4153
Query 1721 GACTAGGACATGGGGACAAGGATGATCGAAAAACGCCAACATTAGTTGAAGCTCTAAGGG 1780
||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||
Sbjct 4154 GACTAGGACATGGGGACAAAGAAGATCGAAAAACGCCAACATTAGTTGAAGCTCTAAAGG 4213
Query 1781 AGAGGCATGTGAAGAGTATATCATGTG 1807
|||||||||||||||||||||||||||
Sbjct 4214 AGAGGCATGTGAAGAGTATATCATGTG 4240
Score = 832 bits (450), Expect = 0.0
Identities = 505/531 (95%), Gaps = 6/531 (1%)
Strand=Plus/Plus
Query 241 GCTGTTTTTCGAAGATATTTACGTCCCGAAAAGGATTACTTGTCATTTTCTCTCATATAT 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2731 GCTGTTTTTCGAAGATATTTACGTCCTGAAAAGGATTACTTGTCATTTTCTCTCATATAT 2790
Query 301 CACAACGGAGATAGATCTCTTGATCTGATTTGCAAAGACAAAGCTGAAACAGAGGTTTGG 360
|| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 2791 CATAACGGAGATAGATCTCTTGATCTGATTTGCAAGGACAAAGCTGAAACAGAGATTTGG 2850
Query 361 TTTGCAGGACTTAAGTCTTTAATTAGACAAAACCGTAACAAGCAAGCCAAAAGTGAGATC 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2851 TTTGCAGGACTTAAGTCTTTAATTAGACAAAACCGTAACAAGCACGCCAAAAGTGAGATC 2910
Query 421 CCTGAGGTGAGTATACATGACAGTGATTGTTTCTCTACTGGTCGTCCTTCTACTGCATCT 480
|| |||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2911 CC-----TGAG-ATACATGACAGTGACTGTTTCTCCACTGGTCGTCCTTCTACTGCATCT 2964
Query 481 ATAGATTTCGCACCAAACAATACTCGACGTGGAAGAACATCCATTGATTTAGGAATCCAG 540
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2965 ATAGATTTCGCACCAAACAATACTCGACGAGGAAGAACATCCATTGATTTAGGAATCCAA 3024
Query 541 AACTCTCCAACAAAGTTTGGTAGCTCAGATGTGGGATATGAACGTGGAAACATGCTAAGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3025 AACTCTCCAACAAAGTTTGGTAGCTCAGATGTGGGATATGAACGTGGAAACATGCTAAGA 3084
Query 601 CCAAGTACTGATGGTTTTCGAATTAGTGTCTCAAGCACACCAAGTTGTTCAACTGGAACT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3085 CCAAGTACTGATGGTTTTCGAATTAGTGTCTCAAGCACACCAAGTTGTTCAACTGGAACT 3144
Query 661 TCTGGTCCTGATGACATAGAATCCTTAGGAGATGTTTATGTCTGGGGAGAAGTTTGGAGC 720
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 3145 TCTGGTCCCGATGACATAGAATCCTTAGGCGATGTTTATGTCTGGGGAGAAGTTTGTAGC 3204
Query 721 GACGGGATATCACCAGACGGGGTCGTAAACTCCACAACTGTAAAAATAGAT 771
||||||||||||| ||| ||| ||| |||| || ||| ||||||||||||
Sbjct 3205 GACGGGATATCACAAGATGGGACCGTTAACTGCAGAACCGTAAAAATAGAT 3255
Score = 263 bits (142), Expect = 7e-69
Identities = 148/151 (98%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 1 ATGAAGACAGATGGAATGGCAGATCCCTCTAGCTATGTCAATCATGACCGTGACATCGAC 60
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 2581 ATGAAGACAGATGGAATGGCAGATCACTCTAGCTATGTCAATCACGACCGTGACATCGAC 2640
Query 61 CAAGCACTCGTTTCTTTGAAAAAAGGAACTCAATTACTTAAGTATAGCCGCAAAGGAAGG 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2641 CAAGCACTCGTTTCTCTGAAAAAAGGAACTCAATTACTTAAGTATAGCCGCAAAGGAAGG 2700
Query 121 CCTAAATTTCGCTCATTCAGGCTTTCGCCGG 151
|||||||||||||||||||||||||||||||
Sbjct 2701 CCTAAATTTCGCTCATTCAGGCTTTCGCCGG 2731
Score = 163 bits (88), Expect = 7e-39
Identities = 124/140 (89%), Gaps = 7/140 (5%)
Strand=Plus/Plus
Query 3138 GCTTCTGATTCAGTTCCTACACCAACTCAACCTCAACCACCAGCTTCTGATTCAGTTCCT 3197
||||||||| | ||||||||||||||||||||||||| |||||||||| | || |
Sbjct 5464 GCTTCTGATCCTGTTCCTACACCAACTCAACCTCAACGACCAGCTTCTCCTACA----C- 5518
Query 3198 ACACCAACTCAACCTCAACCACCAGCTTCTCCTACACAACCGAATTCTGATCAAGCAGAG 3257
| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 5519 A-ACCAACTCAACCTCAACCACCAGCTTCTCCTACACAACCAAATCCTGATCAAGCAGAG 5577
Query 3258 GATTCAAAAGAAGTTCTTGA 3277
|||||| | |||||||||||
Sbjct 5578 GATTCAGA-GAAGTTCTTGA 5596
Score = 52.8 bits (28), Expect = 2e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 3116 ACCAACTCAACCTCAACCACCAGCTTCT 3143
||||||||||||||||||||||||||||
Sbjct 5520 ACCAACTCAACCTCAACCACCAGCTTCT 5547
> Ahg319046 jgi|Araly1|319046|fgenesh1_pm.C_scaffold_3002062
Length=3132
Score = 1635 bits (885), Expect = 0.0
Identities = 1888/2352 (80%), Gaps = 150/2352 (6%)
Strand=Plus/Plus
Query 16 ATGGCAGATCCCT-CTA---GCTATGTCAATCATGACCGTGACATCGACCAAGCACTCGT 71
||||||||| ||| ||| | ||| || |||| || |||||||||||||||||||| |
Sbjct 1 ATGGCAGAT-CCTGCTAGTTGTTATATCCATCACGAGCGTGACATCGACCAAGCACT--T 57
Query 72 TTC-T-TTGAAAAAAGGAACTCAATTACTTAAGTATAGCCGCAAA-GGAAGGCCTAAATT 128
|| | ||||||| |||||||||||||| ||||| || || ||| |||| ||||||||
Sbjct 58 GTCGTACTGAAAAAGGGAACTCAATTACTCAAGTACAGTCGGAAAGGGAA-ACCTAAATT 116
Query 129 TCGCTCATTCAGGCTTTCGCCGGATGAAACAACATTGTTTTGGTTATCACACGGAGAAGA 188
||| ||||||||||||| |||||||||| ||| ||| ||||||| || | ||||||||
Sbjct 117 CCGCGCATTCAGGCTTTCTCCGGATGAAAAAACGTTGATTTGGTTCTCGCGTGGAGAAGA 176
Query 189 AAAAGGTTTGAAGTTA-GCTACAGTTTCACGAATTC-TCCCAGGTCAAAGAACTGCTGTT 246
|||||||||||||||| | | |||||| || | || |||| || ||||||| |
Sbjct 177 AAAAGGTTTGAAGTTATTCGA-AGTTTCTCGTA-TCGTCCCGGGACAAAGAA---C---- 227
Query 247 TTTCGAAGATATTTACGTCCCGA-AAAGGATTACTTGTCATTTTCTC-TCATATATCACA 304
| |||| ||||||||| || ||| ||| |||| |||||||| | || ||||| |||
Sbjct 228 --T---AGATTTTTACGTCCAGAGAAA-GATCACTTATCATTTTCACTTC-TATATAACA 280
Query 305 ACGGAGATAGATCTCTTGATCTGATTTGCAAAGACAAAGCTGAAACAGAGGTTTGGTTTG 364
|| |||| || || |||||||||||||| || |||||||| || ||||||||||||||||
Sbjct 281 ACAGAGAAAGGTCACTTGATCTGATTTGTAAGGACAAAGCAGAGACAGAGGTTTGGTTTG 340
Query 365 CAGGACTTAAGTCTTTAATTAGACAAAA-CCGTAA-C-AAGCAAGCCAAAAGTGAGATCC 421
| || ||||| | ||| ||| || |||| ||||| | | || |||| |||||||||||
Sbjct 341 CTGGCCTTAAATTTTTGATT-GAGAAAAGTCGTAATCGACGC--GCCAGAAGTGAGATCC 397
Query 422 CTGAGGTGAGTATACATGACAGTGATTGTTTCTCTACTGGTCGTCCTTCTACTGCATCTA 481
| |||| |||||||||||||| ||||||| |||||| || | |||||
Sbjct 398 C-----TGAG-ATACATGACAGTGACACTTTCTCTGTTGGTCG----TC-A----ATCTA 442
Query 482 TAGA-TTTCG-CACCAAACAATACT-CGACGTGGAAGAACATCCATTGATTTAGGAATCC 538
|||| ||| | | |||||||||| | ||| | || |||||||| ||||| ||||| |
Sbjct 443 TAGACTTT-GTC-CCAAACAATATTCCGA-GAGGTAGAACATCAATTGACTTAGG----C 495
Query 539 AGAACTCTCCAACAAAGTTTGGTAGCTCAGATGTGGGATATGAACGTGGAAACATGCTAA 598
| || ||| || | |||||||||||||||||||||||||||||| |||
Sbjct 496 --TA-TC-AGAAC-AA------T---TCAGATGTGGGATATGAACGTGGAAACATGTTAA 541
Query 599 GACCAAGTACTGATGGTTTTCGAATTAGTGTCTCAAGCACACCAAGTTGTTCAACTGGAA 658
|||||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||
Sbjct 542 GACCAAGTACGGATGGTTTTCGGATCAGTGTCTCAAGCACACCAAGTTGTTCAAGTGGAG 601
Query 659 CTTCTGGTCCTGATGACATAGAATCCTTAGGAGATGTTTATGTCTGGGGAGAAGTTTGGA 718
|||||||| ||||| || ||||| ||||| |||||||| || | ||| ||||||||||
Sbjct 602 GATCTGGTCCAGATGATATTGAATCATTAGGTGATGTTTACGTTTAGGGTGAAGTTTGGA 661
Query 719 GC-GACGGGATATCACCAGACGGGGTC-GTAAACTCCA-CAACTGTAAAAATAGATGTAT 775
| || ||||||| |||||| || | || | | | ||| || |||| |||||||
Sbjct 662 -CTGAAGGGATATTACCAGA-TGGAACTGTTAGC-AAAGAAACAGTGAAAACAGATGTAC 718
Query 776 TGATTCCAAAACCCTTGGAATCAAATGTAGTACTTGATGTTCATCAGATAGCTTGCGGTG 835
||| ||||| ||| ||||||||||| || || ||||||||||||||||| | ||||||||
Sbjct 719 TGACTCCAAGACCTTTGGAATCAAACGTTGTGCTTGATGTTCATCAGATTGTTTGCGGTG 778
Query 836 TAAGGCATATCGCTCTTGTGACAAGACAAGGTGAAGTCTTT-ACATGGGAAGAAGAAGCT 894
||||||| | || ||||||||||||||||| || || ||| || |||| |||||||| |
Sbjct 779 TAAGGCACGTTGCGCTTGTGACAAGACAAGGAGAGGT-TTTCACTTGGGGAGAAGAAGTT 837
Query 895 GGAGGAAGGCTTGGACATGGTATTCAAGTCGACGTTTGTCGTCCAAAACTTGTTGAGTTT 954
|||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||||
Sbjct 838 GGAGGAAGGCTTGGACATGGTATTCAAGTCGATATTAGTCGTCCGAAACTAGTTGAGTTT 897
Query 955 CTTGCTCTTACCAATATAGATTTTGTTGCTTGTGGAGAATATCATACTTGTGCTGTATCT 1014
|||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 898 CTTGCTCTAACCAACATAGATTTTGTTGCTTGTGGAGAATATCATACTTGTGTTGTTTCT 957
Query 1015 ACGTCCGGAGATTTGTTTACTTGGGGAGATGGAATCCATAATGTTGGACTTTTGGGACAT 1074
|| || || || |||||| | |||||||||||||||||||||||||| || || ||||||
Sbjct 958 ACCTCTGGTGACTTGTTTTCATGGGGAGATGGAATCCATAATGTTGGTCTATTAGGACAT 1017
Query 1075 GGAAGTGATCTTAGTCATTGGATACCGAAAAGAGTCTCTGGTCCTGTGGAAGGACTTCAA 1134
|| |||||| |||| ||||||||||| |||||||||||||||||| | ||||| ||||||
Sbjct 1018 GGTAGTGATATTAGCCATTGGATACCTAAAAGAGTCTCTGGTCCTTTAGAAGGTCTTCAA 1077
Query 1135 GT-CTTGTCTGTTGCGTGTGGCACGTGGCATTCCGCGCTT--GCGACTGCTAATGGAAAA 1191
|| || || ||||| ||||| || |||||||| | |||| || ||||| || || ||
Sbjct 1078 GTACTC-TCAGTTGCTTGTGGAACATGGCATTC-G-GCTTTAGCTACTGCGAACGGGAAG 1134
Query 1192 CTATTCACTTTTGGTGATGGAGCGTTTGGTGTTCTTGGA-CATGGAGATAGAGAGAGTGT 1250
|||||||| |||||||||||||||||||| ||| |||| |||||| | ||||| |||||
Sbjct 1135 CTATTCACGTTTGGTGATGGAGCGTTTGGCGTT-TTGGGTCATGGAAACAGAGAAAGTGT 1193
Query 1251 TTCATACCCTAAAGAAGTGAAAAT-GTTGAGTGGTCTT-AAAACCT-TGAAAGTAGCTTG 1307
||| || ||||| ||||| | | | ||| | ||| || ||||| | |||||||||||||
Sbjct 1194 TTCGTATCCTAAGGAAGT-ACAGTCGTTAAACGGT-TTGAAAAC-TGTGAAAGTAGCTTG 1250
Query 1308 TGGCGTGTGGCATACGG-TAGCTATAGTTGAAGTTATGAATCAGACCGGTACTAGTACCT 1366
| | | |||||||| | | || || || || |||||| |||||| ||||| |||| |
Sbjct 1251 TAGTATCTGGCATACCGCT-GCGATTGTCGAGGTTATGGGTCAGACTGGTACGAGTATGT 1309
Query 1367 CATCTAGAAAGTTGTTTACTTGGGGCGATGGTGATAAAAACAGGCTAGGACATGGAAATA 1426
||||||| ||||||||||||||||| |||||||| |||||||| | ||||||||||| |
Sbjct 1310 CATCTAGGAAGTTGTTTACTTGGGGTGATGGTGACAAAAACAGATTGGGACATGGAAACA 1369
Query 1427 AAGAGACTTATCTT-CTTCCAACTTGTGTATCTTCACTAATTGACTACAACTTTAACCAA 1485
|||||||||| ||| |||||||||||||| ||||| || ||||||||||||||| | ||
Sbjct 1370 AAGAGACTTA-CTTGCTTCCAACTTGTGTCTCTTCTCTTATTGACTACAACTTTCAT-AA 1427
Query 1486 -ATCGCGTGTGGTCATACATTCACAGTTGCGCTCACAACCTCAGGACATGTTTTTACTAT 1544
|| || || || |||||||| || || || |||||||| || |||||||||||||||||
Sbjct 1428 GATTGCTTGCGGACATACATTTACCGTCGCACTCACAACTTCTGGACATGTTTTTACTAT 1487
Query 1545 GGGAGGGACTTCACATGGTCAGCTTGGTAGCTCGAAT-TCTGATGGTAAACTGCCTTGCT 1603
||| || || | ||||||||||| |||| ||| ||| |||||||||||| | || ||||
Sbjct 1488 GGGTGGTACCGCGCATGGTCAGCTAGGTAACTC-AATATCTGATGGTAAATTACCATGCT 1546
Query 1604 TGGTTCAAGATCGATTGGTTGGTGAATTCGTTGAAGAAATATCATGTGGGGATCATCATG 1663
|||| ||||||||||||||||| |||||||| |||||||| | || || ||||| ||||
Sbjct 1547 TGGTGCAAGATCGATTGGTTGGAGAATTCGTGGAAGAAATCGCGTGCGGAGATCACCATG 1606
Query 1664 TTGCTGTCCTGACATCGAGAAGTGAAGTCTTTACTTGGGGAAAAGGTTCAAATGGAAGAC 1723
|||| || ||||||| |||||||||||||| || |||||||||||| | |||||||||
Sbjct 1607 TTGCGGTTTTGACATCTAGAAGTGAAGTCTTCACATGGGGAAAAGGTGCTAATGGAAGAT 1666
Query 1724 TAGGACATGGGGACA-AGGATGATCGAAA-AACGCCAACAT-TAGTTGAAGCTCTA-AGG 1779
|||||||||| || | || | ||| ||| ||| ||||| | | |||||||| || ||
Sbjct 1667 TAGGACATGGAGATACAG-AGGATA-AAAGAACACCAACTTGT-GTTGAAGC-CTTGAGA 1722
Query 1780 GAGAGGCATGTGAAGAG-TATATCATGTGGTTCCAACTTTACATCAAGTATATGCATCCA 1838
|| |||||||||||||| | |||| || || || |||||||| || |||||||| || ||
Sbjct 1723 GATAGGCATGTGAAGAGCT-TATCTTGCGGCTCAAACTTTACGTCGAGTATATGTATACA 1781
Query 1839 TAAGTGGGTCTCAGGAGCTGATCAATCTGTTTGTTCTGGTTGTCGTCAAGCATTTGGTTT 1898
||| ||||| || ||||| ||||| || | || || || |||||||||||||| || ||
Sbjct 1782 TAAATGGGTATCTGGAGCAGATCAGTCAATCTGCTCCGGATGTCGTCAAGCATTCGGATT 1841
Query 1899 TACGAGAAAGAGGCATAATTGTTATAACTGCGGTTTAGTGCATTGCCATGCGTGTAGTTC 1958
||| | |||||||||||||||||||| || |||||||| ||||| ||||| ||||| ||
Sbjct 1842 TACTCGGAAGAGGCATAATTGTTATAATTGTGGTTTAGTCCATTGTCATGCTTGTAGCTC 1901
Query 1959 CAAGAAAGCTTTGAAAGCAGCATTAGCTCCAACTCCAGGGAAACCACATCGAGTATGTGA 2018
||||||||| | ||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 1902 AAAGAAAGCTCTAAAAGCAGCATTAGCTCCAACTCCGGGGAAACCACATCGCGTATGCGA 1961
Query 2019 TGCTTGTTACA-CAAAACTTAAAGCTGG-AGAGTCTGGTTATAACTCTAATGTTGCTAAT 2076
||||||||||| |||| |||||||| || |||||||||||||| |||||||| ||
Sbjct 1962 TGCTTGTTACAGCAAA-CTTAAAGC-GGCAGAGTCTGGTTATAGTTCTAATGTA---AAC 2016
Query 2077 AGAAAT-TCCACAACTCCTAC-ACGGTCACTAGATGGGACAGGAAGACCAGACAGAGATA 2134
|| ||| | ||||||| | ||||||| |||||||| ||| |||| |||| ||| |
Sbjct 2017 AGGAATGTTG-CAACTCC-AGGACGGTCAATAGATGGGTCAGTAAGAAGTGACAAAGAAA 2074
Query 2135 TAA---GGTCTTCAAG-GATTCTACT-GTCCCCCAAA-ACAGAAC-CAGTCAAGT-ATTC 2186
|| |||| |||| | |||| || |||| | ||| ||| || |||||| || || |
Sbjct 2075 CAACAAGGTCATCAAAAG-TTCT-CTTGTCCGC-AAATACA-AATTCAGTCAGGTCAT-C 2129
Query 2187 -TGA-GGT-TAGGTCATCAAGATCTGAATCTTCTATTG-TCAGAGCTTCACAAGTTCCAG 2242
| | || | || | ||| | |||| ||||||| || || | || || |||||||||
Sbjct 2130 ATCAAGGCCT-GGAC-TCAC-ACCTGATTCTTCTAATGCTC-GTGCCTCGCAAGTTCCAT 2185
Query 2243 CTCTCCAGCAACTTAGAGATGTTGCATTCCCAAGCTCTCTTAGCGCGATTCAAAATGCCT 2302
||||||| ||||||| ||| |||||||||| || || |||||||| ||||||||||| |
Sbjct 2186 CTCTCCAACAACTTAAAGACATTGCATTCCCGAGTTCGCTTAGCGCCATTCAAAATGC-T 2244
Query 2303 TT-AAACCCGTT 2313
|| ||||| |||
Sbjct 2245 TTCAAACCTGTT 2256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129509920919
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5