BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14380.1
Length=1007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493464 jgi|Araly1|493464|fgenesh2_kg.7__2897__AT4G14380.1 1103 0.0
Ahg905379 jgi|Araly1|905379|Al_scaffold_0003_2507 178 7e-44
> Ahg493464 jgi|Araly1|493464|fgenesh2_kg.7__2897__AT4G14380.1
Length=864
Score = 1103 bits (597), Expect = 0.0
Identities = 746/815 (92%), Gaps = 21/815 (3%)
Strand=Plus/Plus
Query 23 aaaaaaaaaaaaaaaG-TAAGTCTCTGAATGGCTTCGTTGCGGCAAAAGAAGAAGCAAAA 81
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AAAAAAAAAAAAAAAGTTAAGTCTCTGAATGGCTTCTTTGCGGCAAAAGAAGAAGCAAAA 60
Query 82 TCCTGCGAAGAGGGCATGGAAAAACTTTACAAACATGGTCAAGTCGAAGTTCAGAGACAT 141
||| ||||||||||||||||||||||| ||||||||||| || || || |||||||||||
Sbjct 61 TCCAGCGAAGAGGGCATGGAAAAACTTCACAAACATGGTGAAATCCAAATTCAGAGACAT 120
Query 142 GGAGATCGCTTCATCGGTCAGAGAATCAACGGCTCGTG-TCTTCCGGTTCATTTCTCGCC 200
||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||
Sbjct 121 AGAGATCGCTTCATCGGTCAGAGAATCAACAGCTCGTGTTC-TCAGGTTCATTTCTCGCC 179
Query 201 GTCTCATCGTTCCTTTTAGAACAAGGTACCTTCAAAACAATAGCTACACGGACAAATACT 260
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 GTCTCATCGTTCCTTTTAGAACAAGGTACCTCCAAAACAATAGCTACACGGACAAATACT 239
Query 261 ACTATAGCCGGAACCAAAGTTCTCGACAGTTTCTCAACTTCATT-TCTCGATCTCTCACC 319
|||| |||||||||||||||||||| ||||||||||| || || ||||||||||||||
Sbjct 240 ACTACAGCCGGAACCAAAGTTCTCGGCAGTTTCTCAATTTT-TTCTCTCGATCTCTCACG 298
Query 320 AAACCAAAGCGTCGTCAGTATGGATACGATGATGAAT---ACTCTCAAATCTATCAATAC 376
||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||
Sbjct 299 AAACCAAAGCGTCGTCAATATGGATACGATGATGATTGTTACTCTCAAATCTATCAATAC 358
Query 377 CAAAGCCAATCACGCGGTGAGGGGACAAGTGGGAGCaaagagaatgttgtgagacgaata 436
|||||||||||||| || |||||||| |||| ||||||||| || ||||| || |||| |
Sbjct 359 CAAAGCCAATCACGTGGCGAGGGGACGAGTGAGAGCAAAGAAAACGTTGTTAGGCGAA-A 417
Query 437 gaagagcaaaaagaagaagaagaagaagaagaagaagGGATGCCGGAGATTGCTGATTCG 496
| ||| || ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 418 -A-GAG------GA-GAA-AC-AAGAAGAAGAAGAAGGGATGCCGGAGATTGCTGATTCG 466
Query 497 ATGGAAGATGCTTGGAGGAGAGTGGTGGCTGCATCGCCTCATCTGCAGGTTAACGAGAGA 556
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 467 ATGGAAGATGCTTGGAGGAGAGTGGTGGCTGCATCGCCGCATTTGCAGGTTAACGAGAGA 526
Query 557 GCCGACGAGTTCATCTACAAGTTTAGAGAAAGTATGAAGATGGAGAAAGAGAGGTCGTTT 616
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 527 GCCGACGAGTTCATCTACAAGTTTAGAGAAAGTATGAAGATGGAGAAGGAGAGGTCGTTT 586
Query 617 CTTGAATTCCAAGAAAGGCTAAAACGAAGTGCTTGATTGATCGATCACTCATGAGTGTGT 676
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 587 CTTGAATTCCAAGAAAGGTTAAAACGAAGTGCTTGATTGACCGATCACTCATGAGTGTGT 646
Query 677 TCCATGttcttcttctgatttctcttggttgaattttttaaagaacttggttttctcatt 736
||||||||||||||||||||||||||| || |||||| |||||||||| |||||||||||
Sbjct 647 TCCATGTTCTTCTTCTGATTTCTCTTGATTAAATTTTCTAAAGAACTTTGTTTTCTCATT 706
Query 737 ctttcttctttGTTACAAAATTCGAGAATTTTCAGAAGTGTTAACAAACtttttttCTAC 796
||||||||||||||| ||||| | | | ||||| |||||||||||||||||||| || |
Sbjct 707 CTTTCTTCTTTGTTAAAAAATGGGGGTACTTTCAAAAGTGTTAACAAACTTTTTT-CTTC 765
Query 797 ATTATATTTTTCTTATGTAATGTGAATACATATGG 831
||| | |||||| |||||||||||||||||||||
Sbjct 766 ATTTTGTTTTTCCGATGTAATGTGAATACATATGG 800
> Ahg905379 jgi|Araly1|905379|Al_scaffold_0003_2507
Length=291
Score = 178 bits (96), Expect = 7e-44
Identities = 167/200 (84%), Gaps = 10/200 (5%)
Strand=Plus/Plus
Query 452 gaagaagaagaagaagaagaagGGATGC-C-GGAGATTGCTGATTCGATGGAAGATGCTT 509
||| ||||||||||||||| ||||| || | ||| ||| |||||||||||||| |||||
Sbjct 91 GAAAAAGAAGAAGAAGAAG-AGGGA-GCGCATGAGCTTGTTGATTCGATGGAAGGTGCTT 148
Query 510 GGAGGAGAGTGGTGGCTGCATCGCCTCATCTGCAGGTTAACGAGAGAG-CC-GACGAGTT 567
||||||||||||||||||||||||| || || |||| |||| | || || | ||||||
Sbjct 149 GGAGGAGAGTGGTGGCTGCATCGCCGCACCTTAAGGTGGACGAAA-AGGCCAG-CGAGTT 206
Query 568 CATCTACAAGTTTAGAGAA-AGTATGAAGATGGAGAAAGAGAGGTCGTTTCTTGAATTCC 626
|||||| ||||||| ||| || |||| |||||| |||||||| || |||||||| ||||
Sbjct 207 CATCTATAAGTTTAAAGAGGAG-ATGAGGATGGAAAAAGAGAGATCTTTTCTTGAGTTCC 265
Query 627 AAGAAAGGCTAAAACGAAGT 646
|||||||| ||| ||||||
Sbjct 266 AAGAAAGGTTAATTCGAAGT 285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37436704494
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5