BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14385.1
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946948 jgi|Araly1|946948|scaffold_703177.1 857 0.0
> Ahg946948 jgi|Araly1|946948|scaffold_703177.1
Length=529
Score = 857 bits (464), Expect = 0.0
Identities = 504/523 (96%), Gaps = 3/523 (1%)
Strand=Plus/Plus
Query 168 TTTCTCAGAAAATGTCGTTAGGGCAAAAGAGTTCGACGGATCCTGGTGCGATGCTCACTT 227
|||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 TTTCACGGAAAATGTCTTTAGGGCAAAAGAGTTCGACGGATCCTGGTGCGATGCTCACTT 69
Query 228 CTCTTCTGAACAAGCGAGAGAAGCTTCGCCAAGAGTTACGAAGCATCGAGAAACAGGTTT 287
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 70 CTCTTTTGAACAAGCGAGAGAAGCTTCGTCAAGAGTTACGAAGCATCGAGAAACAGGTTT 129
Query 288 ATGAATTGGAGACAAGCTATCTTCAAGAATCGAGTCATATTGGAAATGCTTTGAAAGGCT 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 130 ATGAATTGGAGACAAGCTATCTTCAAGAATCGAGTCATATTGGAAATGCTTTGAAAGGTT 189
Query 348 TTGAAGGGTTTTTGTCTTCCTCCAAGAGTACTGCTAGTGCTAAAAGGTCAAGGAAGTTTC 407
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 190 TTGAAGGGTTTTTGTCTTCCTCCAAGAGTACTGCTAGTGCTAAGAGGTCGAGGAAGTTTC 249
Query 408 AGCCTGAAGACAGAGTCTTCTCATTGTCCTCAGTTACATCACCAGCTGCTGAAGAACTTG 467
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 250 AGCCTGAAGACAGAGTCTTTTCATTGTCCTCAGTTACATCACCTGCTGCTGAAGAACTTG 309
Query 468 GTGTTGGAAGAGAAGATGGACGAGCTGAATTAGGGCCAGGGCGATCCAAGGGTGGTTTGT 527
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 310 GTGTTGGAAGAGAAGATGGACGAGCTGAATTAGGGCCAGGGCGATCTAAGGGTGGTTTGT 369
Query 528 CGACACAGGGAAAGCCGAAGAAAGGGAGAGGACAATCAATAATAGCAAGAGAGGCAAAGA 587
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 370 CGACACAGGGAAAGCCAAAGAAAGGGAGAGGACAATCAATA---GCAAGAGAGGCAAAGA 426
Query 588 GAAGCAGACCATCTACAGAACCAGATTATGAAGATGAAGATGATCCTGATATGAATATGT 647
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 427 GAAGCAGACCATCAACAGAACCAGATTATGAAGATGAAGATGATCCGGATATGAATATGT 486
Query 648 ATGGCCATGGTTCACTCATCTAAGGCATTTTCTGTTTTGGTGC 690
|||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 487 ATGGGCATGGTTCACTCATCTAAGGCGTTTTCTGTTTTGGTGC 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30612702351
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5