BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14390.1
Length=2085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946947 jgi|Araly1|946947|scaffold_703176.1 966 0.0
> Ahg946947 jgi|Araly1|946947|scaffold_703176.1
Length=942
Score = 966 bits (523), Expect = 0.0
Identities = 743/848 (88%), Gaps = 20/848 (2%)
Strand=Plus/Plus
Query 76 GAGCTAGATAGAATTGAGGCACAAAGGTCAACAGATGCGTCTCATGATCAACAGAACA-G 134
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | |
Sbjct 44 GAGCTAGATAGAATTGAGGCACAAAGGTCAACGGATGCGTCTCATGATCAACGGAA-AGG 102
Query 135 AACATACTTACCCATGAACATACACGGTTCACAAGACTTCTCTCAAAGCGGAGGAGATGG 194
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 103 AACATACTTACCCATGAACATACATGGTTCACAAGATTTCTCTCAAAGCGGAGGAGATGG 162
Query 195 CGTCACGCCACTTACAGGAGACACCGAATCTGTGCCAGAGTTCCTTACTAACCTTAGATT 254
|| |||| ||| ||| ||||||||||||||| ||||||||||||| |||||||| |||||
Sbjct 163 CGCCACGTCACCTACGGGAGACACCGAATCTATGCCAGAGTTCCTAACTAACCTCAGATT 222
Query 255 GTCGGATCTTTACGCTATCCGTGGTGAAGATGTCCGGATGATTCCAGAGG-TTTTTAGTA 313
||||||||||| |||||| |||||| ||||| ||| |||| |||| || |||||||||
Sbjct 223 GTCGGATCTTTTCGCTATTCGTGGTAAAGATTTCCCGATGCCTCCA-TGGATTTTTAGTA 281
Query 314 AAATAAGTGATGGGAACAAAGAATGTCTGGAGAAGTTGAGAAGCC-GTGGAATTTCAGTG 372
|||||||||||||||||||| |||||||||||||||||| ||||| | ||||| | ||
Sbjct 282 AAATAAGTGATGGGAACAAACAATGTCTGGAGAAGTTGAAAAGCCACAGAAATTT-AATG 340
Query 373 GCACGTATCAAGAGCAATACAGGAGATTCAATTCTTCATCTTGCTGTTACATGGGGTCAT 432
|||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 341 GCACGTCTCAAGAGCAATACAGGAGATTCAATTCTTCATCTTGCTGCTAGATGGGGTCAT 400
Query 433 CTAGAACTAGTGAAGGAGATTGTCTGTGAATGCCCGCGTCTTCTCTTGGAGCAAAACTCA 492
||||||||||||||| | |||| ||||||||| ||| | ||||| ||||||| ||||||
Sbjct 401 CTAGAACTAGTGAAGAACATTGCCTGTGAATGTCCGTGCCTTCTATTGGAGCCAAACTCG 460
Query 493 AGCGGTCAGACACCGCTACATGTGGCGGCTCATAGCGGTCATACCACTATTGTTGAGGCT 552
||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 461 AGCGGTCAGACACCGCTTCATGTGGCGGCTCATGGCGGTCATACCGCTATTGTTGAGGCT 520
Query 553 TTTGTCGCATTGGTAACATTTTCTTCAGCTAGACTGTGTAATGAAGAGAGTGAGAGAATG 612
||||| ||||||||||||||| | ||| ||||| ||||||||||||||||||||||| ||
Sbjct 521 TTTGTTGCATTGGTAACATTTGCCTCATCTAGATTGTGTAATGAAGAGAGTGAGAGAGTG 580
Query 613 AACCCATATGTTCTCAAGGACAAAGATGGAAATACTGCTCTGTACTACGCGATTGAAGGG 672
|| |||||||||||||||||| | |||||||||||||||||| ||| || ||| ||||
Sbjct 581 AATCCATATGTTCTCAAGGACGAGGATGGAAATACTGCTCTGCACTTGGCCATTAAAGGA 640
Query 673 CGCTATTTCGAGATGGCT-GTATGTCTGGTGAACGCAAACCAGGATGCTCCTTTTCTTGG 731
| |||||| ||||| ||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct 641 CTCTATTTGGAGATCGCTAG-ATGTCTGGTGAACGCGAACCAGGATGCTCCTTTTCTTGG 699
Query 732 AAATAAGTATGGAGTATCTTCCTTGTTTGTGGCAATA-AATACTGGAGATG-TATCTCTT 789
|||||| | ||| |||||||||||| | ||||| || || || || ||| || | |||
Sbjct 700 AAATAACAAGGGAATATCTTCCTTGTATATGGCAGTAGAAG-CTAGA-ATGGTAACCCTT 757
Query 790 GTGAAAGCAATTTTGAAAA-TCATAGGC-A--AC-A--AGGACCTTAAAGGGAAGAAGTC 842
||| ||||||||||||||| | | || | | || | |||||||| |||||||||||||
Sbjct 758 GTGGAAGCAATTTTGAAAACTAA-AGACGATGACGATGAGGACCTTGAAGGGAAGAAGTC 816
Query 843 TAACTTGGAGTCAAAGTTACAAGGGCAGAAATCTCTTGCACATGTTGCTTTGGTGACCCA 902
|||||| ||||| ||| |||||||| | |||| ||||| ||||||||||||| | || |
Sbjct 817 TAACTTAGAGTCGAAGATACAAGGGTACAAATTTCTTGTACATGTTGCTTTGCAGGCCAA 876
Query 903 GAGTATAG 910
||||||||
Sbjct 877 GAGTATAG 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78427814455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5