BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14410.1
Length=1334
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493462 jgi|Araly1|493462|fgenesh2_kg.7__2895__AT4G14410.2 1543 0.0
Ahg479835 jgi|Araly1|479835|fgenesh2_kg.3__2536__AT3G23210.1 298 7e-80
Ahg930345 jgi|Araly1|930345|scaffold_302802.1 86.1 6e-16
> Ahg493462 jgi|Araly1|493462|fgenesh2_kg.7__2895__AT4G14410.2
Length=1144
Score = 1543 bits (835), Expect = 0.0
Identities = 919/960 (96%), Gaps = 4/960 (0%)
Strand=Plus/Plus
Query 376 AATGGAGCAGAACTTGATGATTACACACAGTTTGGTGTAAATTTGCAGACTGATCAAGAG 435
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 187 AATGGAGCAGAACTTGATGATTACACACAATTTGGTGTAAATTTGCAGCCTGATCAAGAA 246
Query 436 GATACCTTTCCAGATTTTGTGTCATATGGTGTGAATTTGCAGCAGGAGCCAGATGAAGTC 495
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 247 GATACCTTTCCAGATTTTGTGTCATATGGTGTGAATTTGCAGCAGGAACCAGAAGAAGTC 306
Query 496 TTTAGTATTGGAGCTTCTCAATTGGATTTGTCCTCGTATAATGGAGTTTTGTCGCTAGAG 555
||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 307 TTTAGTATTGGAGCTGCTCAATTGGATTTGTCGTCGTATAATGGAGTTTTGTCGCAAGAG 366
Query 556 CCAGAACAGGTGGGGCA-ACAAGATTGT-GAAGTTGTGCAGGAAGAAGAAGTAGAGATCA 613
|||||||| || ||||| | |||||||| ||| ||||||||||||| |||||||||||||
Sbjct 367 CCAGAACAAGTAGGGCAGA-AAGATTGTGGAA-TTGTGCAGGAAGATGAAGTAGAGATCA 424
Query 614 ATTCTGGTTCATCTGGTGGAGCTGTTAAGGAAGAACAGGAACATTTAGATGACGATTGCT 673
| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 425 ACTCTGGTCCATCTGGTGGAGCTGTTAAGCAAGAACAGGAACATTTAGATGACGATTGCT 484
Query 674 CCAGAAAGCGGGCAAGGACTGGATCGTGTAGCAGAGGAGGAGGAACTAAAGCGTGTCGTG 733
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 485 CGAGAAAGCGGGCAAGGACTGGATCGTGTAGCAGAGGAGGAGGAACCAAAGCGTGTCGTG 544
Query 734 AAAGGTTGAGGAGGGAGAAGCTAAATGAGAGGTTTATGGATTTGAGCTCGGTTTTGGAGC 793
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 545 AAAGAATGAGGAGGGAGAAGCTAAATGAGAGGTTCATGGATTTGAGCTCGGTTTTGGAGC 604
Query 794 CTGGGAGGACTCCTAAGACTGATAAACCGGCTATACTCGATGATGCAATCCGTATATTGA 853
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 605 CTGGGAGGACTCCAAAGACAGATAAACCGGCTATACTCGATGATGCAATCCGTATATTGA 664
Query 854 ATCAACTTAGAGATGAAGCTCTTAAGCTTGAAGAAACTAACCAGAAGCTTTTAGAGGAGA 913
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 665 ATCAACTTAGAGATGAAGCTCATAAACTTGAAGAAACTAACCAGAAGCTTTTAGAGGAGA 724
Query 914 TCAAGAGTCTCAAGGCGGAGAAGAACGAGCTGAGGGAGGAAAAGCTGGTGTTGAAGGCGG 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TCAAGAGTCTCAAGGCGGAGAAGAACGAGCTGAGGGAGGAAAAGCTGGTGTTGAAGGCGG 784
Query 974 ATAAAGAGAAGACAGAACAACAGTTAAAGTCTATGACGGCTCCATCTTCAGGGTTCATAC 1033
||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct 785 ATAAAGAGAAGACGGAACAACAGTTAAAGTCTATGACGGTTCCATCTTCAGGGCTCATGC 844
Query 1034 CTCATATTCCAGCTGCATTTAACCACAACAAAATGGCTGTTTATCCAAGTTACGGTTACA 1093
|||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 845 CTCAGATTCCAGCCGCATTTAACCACAACAAAATGGCTGTTTACCCGAGTTACGGTTACA 904
Query 1094 TGCCAATGTGGCATTATATGCCTCAATCCGTTCGTGACACATCTCGTGATCAAGAACTCA 1153
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 905 TGCCAATGTGGCATTATATGCCTCAATCGGTTCGTGACACATCTCGTGATCAAGAACTCA 964
Query 1154 GGCCTCCTGCTGCTTAAACTCTCAATTGtttttttttGGTACCCATAGGGAACTCATAGA 1213
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 965 GGCCTCCTGCTGCTTAAACTCTCAATTGTTTTTTTTTGGTACCCATAGGGAACTTATAGA 1024
Query 1214 GATTTCTGAATCACTTGGTTTAGGATTCTTCCGTTTGGCAAGTGTAAAAGCTTTACTCTT 1273
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 GATATCTGAATCACTTGGTTTAGGATTCTTCCGTTTGGCAAGTGTAAAAGCTTTACTCTT 1084
Query 1274 GATCTTGGGTTGTATTTTTCTTATAAAATAAATATAACTCCAGAAACTTGTGATTCTTCT 1333
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1085 GATCTTGGGTTGTATTTTTAATATAAAATAAATATAACTCCAGAAACTTGTGATTTTTCT 1144
Score = 73.1 bits (39), Expect = 5e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 333 CGACGATGATTTCGTCTCTGATTTGTTTTGCTTCGATCAAAG 374
||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGATGATGATTTCGTCTCTGATTTGTTTTGCTTCGATCAAAG 42
> Ahg479835 jgi|Araly1|479835|fgenesh2_kg.3__2536__AT3G23210.1
Length=1190
Score = 298 bits (161), Expect = 7e-80
Identities = 316/389 (81%), Gaps = 17/389 (4%)
Strand=Plus/Plus
Query 714 AGGAACTAAAGCGTGTCGTGA-AAGGTTGAGGAGGGAGAAGCTAAATGAGAGGTTTATGG 772
|||||| ||||| |||||||| || | || ||||| ||||||||||| | ||| ||||
Sbjct 583 AGGAACCAAAGCCTGTCGTGAGAA-ACTAAGAAGGGAAAAGCTAAATGACAAGTTCATGG 641
Query 773 ATTTGAGCTCGGTTTTGGAGCCTGGGAGGACTCCTAAGACTGATAAACCGGCTATACTCG 832
| |||||||| |||||||||||||| |||| ||| ||||| |||||| | ||||||||||
Sbjct 642 ACTTGAGCTCTGTTTTGGAGCCTGGCAGGAATCCAAAGACGGATAAATCAGCTATACTCG 701
Query 833 ATGATGCAATCCGTATAT-TGAATCAACTTAGAGATGAAGCTCTTAAGCTTGAAGAAACT 891
||||||||||||| | | ||||||| || |||| |||||||| | ||||| |||||||
Sbjct 702 ATGATGCAATCCGGGT-TGTGAATCAGCTCAGAGGTGAAGCTCATGAGCTTAAAGAAACC 760
Query 892 AACCAGAAGCTTTTAGAGGAGATCAAGAGTCTCAAGGCGGAGAAGAACGAGCTGA-GGGA 950
|||||||||||| | || |||||||||| ||| ||||||||||| |||||| | | ||||
Sbjct 761 AACCAGAAGCTTCTGGAAGAGATCAAGAATCTAAAGGCGGAGAAAAACGAG-TTACGGGA 819
Query 951 GGAAAAGCTGGTGTTGAAGGCGGATAAAGAGAAGACAGAACAACAGTT-AAAGTCTATGA 1009
||||||||||||||||||||||||||| ||||||| || |||||||| ||| ||||||
Sbjct 820 GGAAAAGCTGGTGTTGAAGGCGGATAAGGAGAAGATGGAGCAACAGTTGAAA-TCTATGG 878
Query 1010 CGGCTCCATCTTCAGGGTT-CATACC-TCATAT--TCCAGCTGCATTTA-A-CCACAACA 1063
|| |||||| | ||||| ||| || ||| | |||||| || ||| | || ||| |
Sbjct 879 CGTTTCCATCACC-GGGTTTCATGCCCTCACAGCATCCAGCAGC-TTTCCATCC-CAATA 935
Query 1064 AAATGGCTGTTTATCCAAGTTACGGTTAC 1092
| ||| | |||||| | ||||| |||||
Sbjct 936 ATATGTCGGTTTATTCGGGTTACAGTTAC 964
> Ahg930345 jgi|Araly1|930345|scaffold_302802.1
Length=670
Score = 86.1 bits (46), Expect = 6e-16
Identities = 80/96 (83%), Gaps = 4/96 (4%)
Strand=Plus/Plus
Query 926 AGGCGGAGAAGAACGAGCTGA-GGGAGGAAAAGCTGGTGTTGAAGGCGGATAAAGAGAAG 984
|||||||||| ||||| | | ||||||||||||||||||||||||||||||| ||||||
Sbjct 415 AGGCGGAGAAAAACGA-ATTATGGGAGGAAAAGCTGGTGTTGAAGGCGGATAAGGAGAAG 473
Query 985 ACAGAACAACAGTT-AAAGTCTATGACGGCTCCATC 1019
| |||||||| ||| |||||| || ||||||
Sbjct 474 GTGGTGCAACAGTTGAAA-TCTATGGCGTTTCCATC 508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49902898353
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5