BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G14420.1

Length=879
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946940 jgi|Araly1|946940|scaffold_703169.1                        815    0.0  


> Ahg946940 jgi|Araly1|946940|scaffold_703169.1
Length=518

 Score =  815 bits (441),  Expect = 0.0
 Identities = 483/504 (96%), Gaps = 0/504 (0%)
 Strand=Plus/Plus

Query  171  AGCTTCAATGGAGTTAGCTTCTTTCCTTGGTAGAGCTCTGTTTGTTTCCGTATTTCTTCT  230
            |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct  15   AGCTTCAATGGAGTTAGCTTCTTTTCTTGGTAGAGCTCTGTTTGTTTCCGTCTTTCTTCT  74

Query  231  CTCCGCATGGCAAGAGTTCAATGATTTTGGTGAAGATGGTGGCCGATCAGCTAAATCTTT  290
            |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct  75   CTCCGCATGGCAAGAGTTTAATGATTTTGGTGAGGATGGTGGCCGATCAGCTAAATCTTT  134

Query  291  GAAACCAAAATTCAATGCCTTTGTAAACCATGTGACAACTCACACTGGCCAGCAATTGCC  350
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  135  GAAACCAAAATTCAATGCCTTTGTAAACCATGTGACAACTCATACTGGCCAGCAATTGCC  194

Query  351  ACCAGTCGATATGAAGATTCTTGTTGCTGCTGCTATAGCCTTGAAGGGTATTGGGGGACT  410
             |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  195  CCCAGTCGATATGAAGATTCTCGTTGCTGCTGCCATAGCCTTGAAGGGTATTGGGGGACT  254

Query  411  ATTGTTTGTCTTTGGCAGCTCATTGGGAGCTTATCTCTTGCTTCTGCATCAAGCCGTTGC  470
             |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct  255  GTTGTTTGTCTTTGGCAGCTCCTTGGGAGCTTATCTCTTGCTTCTGCATCAAGCCATTGC  314

Query  471  CACCCCAATTCTGTATGATTTCTACAACTACGATGTTGACAGAAAGGAATTCGGCCAACT  530
            |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct  315  CACCCCAATTCTGTATGATTTCTACAACTATGATGTTGACAGAAAGGAATTTGGCCAACT  374

Query  531  ATTTTCAAAATTTACACAGAGCTTGGCTCTTCTTGGAGGACTGCTCTTCTTCATTGGAAT  590
            ||||||||||||||| |||||| ||||||| ||||||| |||||||||||||||||||||
Sbjct  375  ATTTTCAAAATTTACTCAGAGCATGGCTCTCCTTGGAGCACTGCTCTTCTTCATTGGAAT  434

Query  591  GAAAAACTCAAGGAAACACGGTAGGCAACTCAGGAAAAAGGCTCCAAAGGCAAAAGCAAA  650
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  435  GAAGAACTCAAGGAAACACGGTAGGCAACTCAGGAAAAAGGCTCCAAAGGCAAAAACAAA  494

Query  651  CTGAAGAAGCCATATCTTTCATCG  674
            ||||| |||||| |||||||||||
Sbjct  495  CTGAAAAAGCCACATCTTTCATCG  518



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32556971118


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5