BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14430.1
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946935 jgi|Araly1|946935|scaffold_703164.1 1177 0.0
Ahg946934 jgi|Araly1|946934|scaffold_703163.1 532 2e-150
> Ahg946935 jgi|Araly1|946935|scaffold_703164.1
Length=765
Score = 1177 bits (637), Expect = 0.0
Identities = 709/745 (95%), Gaps = 0/745 (0%)
Strand=Plus/Plus
Query 52 TCTTCTTCCTCCGATCACCACCATGTGTACGTTAGAGAAACGCGGCGATCTCTTCCTCCT 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTCTTCCTCCGATCACCACCATGTGTACGTTAGAGAAACGCGGCGATCTCTTCCTCCT 60
Query 112 AACCCTAACCGGAGACGGCGAACACAGATTCCACCCCGACACAATTGCCACCATTCTCTC 171
|||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 61 AACCCTAACCGGCGACGGCGAACACAGATTCCACCCCGACACAATCGCCACCATCCTCTC 120
Query 172 CCTTCTCGAACAAGCCAAATCTCAATCCACCCGTGGATCCATCCTCATCACCACCGCCAA 231
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 121 CCTTCTCGAACAAGCCAAATCTCAATCCAAACGTGGATCCATCCTCATCACCACCGCTAA 180
Query 232 CGGCAAATTCTTCTCCAACGGATTCGATCTTGCATGGGCTCAAACCGCCGGATCCAAAAC 291
||||||||||||||||||||| |||||||| || |||||||||||||||||||||| |||
Sbjct 181 CGGCAAATTCTTCTCCAACGGCTTCGATCTCGCCTGGGCTCAAACCGCCGGATCCATAAC 240
Query 292 CGGAGCCGCAAACCGGCTTCACCAAATGGTTGAATCATTCAAACCGGTGGTAGCAGCGCT 351
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 241 CGGAGCTGCAAACCGGCTTCATCAAATGGTTGAATCCTTCAAACCGGTGGTAGCAGCGCT 300
Query 352 TCTCGATCTCCCTATGCCGACGATCGCCGCCTTGAACGGCCACGCCGCCGCCGCGGGATT 411
| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 301 TTTAGATCTCCCTATGCCGACGATCGCCGCCTTGAACGGCCACGCAGCCGCCGCGGGACT 360
Query 412 GATTTTGGCTTTGAGCCATGATTACGTGTTCATGAGGAAAGATCGTGGGGTTCTGTATAT 471
||| ||||| | ||||||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 361 GATGCTGGCTATAAGCCATGATTACGTGCTCATGAGGAAAGACCGTGGGGTTCTGTACAT 420
Query 472 GAGTGAAGTTGACATCGGGCTTTCGATGCCGGATTATTTCTCGGCGTTGGTTAGGGCTAA 531
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGCGAGGTTGACATCGGGCTTTCGATGCCGGATTATTTCTCGGCGTTGGTTAGGGCTAA 480
Query 532 GATCGGGACGAGTGCGGCGAGGAGAGAGCTGTTGTTGAGTGGGAAGAAGATTAGAGGAGA 591
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATCGGTACGAGTGCGGCGAGGAGAGAGCTGTTGTTGAGTGGGAAGAAGATTAGAGGAGA 540
Query 592 AGAAGCGGTGGGTTTGGGGATTGTTGACTCGGCCGCGTATGATAGTGAGGAAGGTGTTGT 651
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 AGAAGCGGTGGGTTTGGGGATTGTTGACTCGGCGGCGTATGATAGTGAGGAAGGTGTTGT 600
Query 652 TGTGGCTAGTGTGCGCCTTGGTGAGAAATTGGCGGCGAAGAAATGGAGCGGTGAGGTTTA 711
|| ||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||
Sbjct 601 TGAGGCTAGTGTGCGCCTTGGTGAGAAATTAGCGGTGAAGAAATGGAGTGGTGAGGTTTA 660
Query 712 TGCGTCGATAAGGAAGAGTTTGTATCCGGAGCTTTGTGGGATTCTTGGTTTAGAGACTAG 771
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 TGCGTCGATTAGGAAGAGTTTGTATCCGGAGCTTTGTGGGATTCTTGGTTTAGAGGCTAG 720
Query 772 AGTGTTTGCAACACCTAAGCTCTAA 796
||| ||| |||||||||||||||||
Sbjct 721 AGTCTTTTCAACACCTAAGCTCTAA 745
> Ahg946934 jgi|Araly1|946934|scaffold_703163.1
Length=758
Score = 532 bits (288), Expect = 2e-150
Identities = 564/695 (81%), Gaps = 28/695 (4%)
Strand=Plus/Plus
Query 70 CACCATGTGTACGTTAGAGAAACGCGGCGATCTCTTCCTCCTAACCCTAACCGGAGACGG 129
||||||||||||||||||||| || ||||||||||| | ||||||||||||||| ||||
Sbjct 18 CACCATGTGTACGTTAGAGAAGCGTGGCGATCTCTTTCACCTAACCCTAACCGGTGACGA 77
Query 130 CGAACACAGATTCCACCCCGACACAATTGCCACCATTCTCTCCCTTCTCGAACAAGCCAA 189
||| |||||||||||||| ||||| || ||| || ||||||| ||||| |||||||| ||
Sbjct 78 CGAGCACAGATTCCACCCGGACACGATCGCCTCCGTTCTCTCGCTTCTTGAACAAGCTAA 137
Query 190 ATCTCAATCCACCCGTGGATCCATCCTCATCACCACC-GCCAACGGCAAA-TTCTTCTCC 247
||||||||| || |||||| |||||||||| ||| | | |||| ||| |||||||||
Sbjct 138 ATCTCAATCTACAAAAGGATCCGTCCTCATCACTACCGGTC-ACGG-AAAGTTCTTCTCC 195
Query 248 AACGGATTCGATCTTGCATGGGCTCAAACCGCCGGATCCAAAACCGGAGCCGCA-AACCG 306
|| || || ||||| |||||||| ||| |||| ||| | | ||| || | || ||
Sbjct 196 AATGGCTTTGATCTCGCATGGGCCCAATCCGCTGGA--C---A-CGGGGCTATAGAA-CG 248
Query 307 GCTTCACCAAATGGTTGAATCATTCAAACCGGTGGTAGCAGCGCTTCTCGATCTCCCTAT 366
| | ||||||||||| |||| |||||||| ||| |||| || || |||||||| || ||
Sbjct 249 GATGCACCAAATGGTCAAATCCTTCAAACCCGTGTTAGCGGCCCTCCTCGATCTTCCAAT 308
Query 367 GCCGACGATCGCCGCCTTGAACGGCCACGCCGCCGCCGCGGGATTGAT-TTTG-GCTTTG 424
|||||||||||||||||||||||||||||| |||||| |||| |||| |||| ||| |
Sbjct 309 GCCGACGATCGCCGCCTTGAACGGCCACGCAGCCGCCTCGGGGCTGATGTTTGCGCT--G 366
Query 425 AGCCATGATTACGTGTTCATGAGGAAAGATCGTGGGGTTCTGTATATGAGTGAAGTTGAC 484
|||||||| ||||| |||||||||||||| ||||||||||| || ||||| || || |||
Sbjct 367 AGCCATGACTACGTTTTCATGAGGAAAGACCGTGGGGTTCTATACATGAGCGAGGTGGAC 426
Query 485 ATCGGGCTTTCGATGCCGGATTATTTCTCGGCGTTGGTTAGG-GCTAAGATCGGGACGAG 543
|||||||| || |||| || || ||||||||||||||| | |||||| ||||| | ||
Sbjct 427 ATCGGGCTGCCGGTGCCAGACTACTTCTCGGCGTTGGTT-GTAGCTAAGGTCGGGTC-AG 484
Query 544 -TG-CGGCGAGGAGAGAGCTGTTGTTGAGTGGGAAGAAGATTAGAGGAGAAGAAGCGGTG 601
| || |||| || ||||||||| |||| ||||||||| | | ||||||||| ||||||
Sbjct 485 GTATCG-CGAGAAGGGAGCTGTTGCTGAGCGGGAAGAAGCTCAAAGGAGAAGACGCGGTG 543
Query 602 GGTTTGGGGATTGTTGACTCGGCCGCGTATGATAGTGAGGAAGGTGTTGTTGTGGCTAGT 661
| | | ||||| || ||||| || ||| | ||||| | ||||||||||| | |||||
Sbjct 544 GCTCTCGGGATCGTGGACTCCGCGGCGCACGATAGCGCTGAAGGTGTTGTGGAGGCTACA 603
Query 662 GTGCGCCTTGGTGAGAAA-TT-GGCGGCGAAGAAATGGAGCGGTGAGGTTTATGCGTCGA 719
||| ||||||| | |||| || ||| || |||||||||| || ||||| ||||| || |
Sbjct 604 GTGAGCCTTGG-G-GAAAGTTTGGCTGCTAAGAAATGGAATGGAGAGGTGTATGCATCCA 661
Query 720 TAAGGAAGA-GTTTGTATCCGGAGCTTTGTGGGAT 753
| |||| || |||||||||||||||||||| ||||
Sbjct 662 TTAGGA-GAAGTTTGTATCCGGAGCTTTGTCGGAT 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5