BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14440.1
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946934 jgi|Araly1|946934|scaffold_703163.1 1125 0.0
Ahg946935 jgi|Araly1|946935|scaffold_703164.1 584 4e-166
> Ahg946934 jgi|Araly1|946934|scaffold_703163.1
Length=758
Score = 1125 bits (609), Expect = 0.0
Identities = 708/756 (94%), Gaps = 6/756 (1%)
Strand=Plus/Plus
Query 75 TCCTTAACGT-ACGCACCATGTGTACGTTAGAGAAGCGCGGCGATCTCTTTCTCCTAACC 133
|||||||| | | ||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 5 TCCTTAACCTGA-GCACCATGTGTACGTTAGAGAAGCGTGGCGATCTCTTTCACCTAACC 63
Query 134 CTAACCGGCGAAGACGAGCACAGATTCCACCCCGACACGATCGCCTCTGTTCTCTCGCTT 193
|||||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 64 CTAACCGGTGACGACGAGCACAGATTCCACCCGGACACGATCGCCTCCGTTCTCTCGCTT 123
Query 194 CTTGAACAAGC-AAAGTCTCAATCCACAAAAGGATCCGTCCTCATCACTACCGGTCACGG 252
||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 124 CTTGAACAAGCTAAA-TCTCAATCTACAAAAGGATCCGTCCTCATCACTACCGGTCACGG 182
Query 253 AAAGTTCTTCTCCAATGGCTTTGACCTCGCGTGGGCTCAATCCGCTGGACACGGTGCTAT 312
|||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct 183 AAAGTTCTTCTCCAATGGCTTTGATCTCGCATGGGCCCAATCCGCTGGACACGGGGCTAT 242
Query 313 AAAACGGATGCACCAAATGGTCAAATCCTTTAAACCGGTGTTAGCCGCCCTCCTCGATCT 372
| |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 243 AGAACGGATGCACCAAATGGTCAAATCCTTCAAACCCGTGTTAGCGGCCCTCCTCGATCT 302
Query 373 TCCAATGCCGACGATCGCCGCCTTGAACGGCCACGCGGCAGCCTCGGGGCTGATGTTTGC 432
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 303 TCCAATGCCGACGATCGCCGCCTTGAACGGCCACGCAGCCGCCTCGGGGCTGATGTTTGC 362
Query 433 GCTGAGCCACGACTACGTTTTCATGAGGAAAGACCGTGGGGTTCTATATATGAGCGAGGT 492
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 363 GCTGAGCCATGACTACGTTTTCATGAGGAAAGACCGTGGGGTTCTATACATGAGCGAGGT 422
Query 493 GGACATCGGGCTACCGGTGCCGGACTACTTCTCGGCGTTGGTCGTGGCTAAGGTTGGGTC 552
|||||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||
Sbjct 423 GGACATCGGGCTGCCGGTGCCAGACTACTTCTCGGCGTTGGTTGTAGCTAAGGTCGGGTC 482
Query 553 AGGTATCGCGAGAAGGGAGCTGTTACTGAGCGGGAAGAAGCTCAAAGGAGAAGAAGCGGT 612
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 483 AGGTATCGCGAGAAGGGAGCTGTTGCTGAGCGGGAAGAAGCTCAAAGGAGAAGACGCGGT 542
Query 613 GGCTCTCGGGATCGTGGACTCAGCGGCGCATGATAGTGCGGAAGGTGTGGTGGAGGCTAC 672
||||||||||||||||||||| |||||||| ||||| || |||||||| |||||||||||
Sbjct 543 GGCTCTCGGGATCGTGGACTCCGCGGCGCACGATAGCGCTGAAGGTGTTGTGGAGGCTAC 602
Query 673 AGTGAGCCTTGGAGAAAGTTTGGCCGCTAAGAAATGGAATGGTGAGGTGTATGCAACCAT 732
|||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||
Sbjct 603 AGTGAGCCTTGGGGAAAGTTTGGCTGCTAAGAAATGGAATGGAGAGGTGTATGCATCCAT 662
Query 733 TAGGAAGA-GTTTGTATCCGGAGCTTTGTCGGATGGTTGATTTAACGGCAAATAACTTGG 791
||||| || |||||||||||||||||||||||||| | || |||||||| ||||||||||
Sbjct 663 TAGGA-GAAGTTTGTATCCGGAGCTTTGTCGGATGCTGGAGTTAACGGCCAATAACTTGG 721
Query 792 CCACTCACAACCTCTAGAAACTCTCATTGTCTTGTT 827
| |||||||| |||||||||||||||||||||||||
Sbjct 722 CAACTCACAATCTCTAGAAACTCTCATTGTCTTGTT 757
> Ahg946935 jgi|Araly1|946935|scaffold_703164.1
Length=765
Score = 584 bits (316), Expect = 4e-166
Identities = 579/704 (82%), Gaps = 26/704 (4%)
Strand=Plus/Plus
Query 88 CACCATGTGTACGTTAGAGAAGCGCGGCGATCTCTTTCTCCTAACCCTAACCGGCGAAGA 147
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 19 CACCATGTGTACGTTAGAGAAACGCGGCGATCTCTTCCTCCTAACCCTAACCGGCGACGG 78
Query 148 CGAGCACAGATTCCACCCCGACACGATCGCCTCTGTTCTCTCGCTTCTTGAACAAG-CAA 206
||| |||||||||||||||||||| |||||| | | ||||| ||||| ||||||| |||
Sbjct 79 CGAACACAGATTCCACCCCGACACAATCGCCACCATCCTCTCCCTTCTCGAACAAGCCAA 138
Query 207 AGTCTCAATCCACAA-AAGGATCCGTCCTCATCACTACCGGTCACGG-AAAGTTCTTCTC 264
| |||||||||| || |||||| |||||||||| |||| | |||| ||| ||||||||
Sbjct 139 A-TCTCAATCCA-AACGTGGATCCATCCTCATCACCACCGCTAACGGCAAA-TTCTTCTC 195
Query 265 CAATGGCTTTGACCTCGCGTGGGCTCAATCCGCTGGA--C---A-CGGTGCTATAAAACG 318
||| ||||| || ||||| ||||||||| |||| ||| | | ||| ||| ||| ||
Sbjct 196 CAACGGCTTCGATCTCGCCTGGGCTCAAACCGCCGGATCCATAACCGGAGCTGCAAACCG 255
Query 319 GATGCACCAAATGGTCAAATCCTTTAAACCGGTGTTAGCCGCCCTCCTCGATCTTCCAAT 378
| | || |||||||| ||||||| ||||||||| |||| || || | ||||| || ||
Sbjct 256 GCTTCATCAAATGGTTGAATCCTTCAAACCGGTGGTAGCAGCGCTTTTAGATCTCCCTAT 315
Query 379 GCCGACGATCGCCGCCTTGAACGGCCACGCGGCAGCCTCGGGGCTGATGTTTGCGCTGAG 438
|||||||||||||||||||||||||||||| || ||| |||| |||||| | || | ||
Sbjct 316 GCCGACGATCGCCGCCTTGAACGGCCACGCAGCCGCCGCGGGACTGATGCTGGCTATAAG 375
Query 439 CCACGACTACGTTTTCATGAGGAAAGACCGTGGGGTTCTATATATGAGCGAGGTGGACAT 498
||| || ||||| ||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 376 CCATGATTACGTGCTCATGAGGAAAGACCGTGGGGTTCTGTACATGAGCGAGGTTGACAT 435
Query 499 CGGGCTACCGGTGCCGGACTACTTCTCGGCGTTGGTC-GTGGCTAAGGTTGGGT-C-AGG 555
|||||| || ||||||| || |||||||||||||| | ||||||| | || | | ||
Sbjct 436 CGGGCTTTCGATGCCGGATTATTTCTCGGCGTTGGTTAG-GGCTAAGATCGG-TACGAG- 492
Query 556 TATCG-CGAGAAGGGAGCTGTTACTGAGCGGGAAGAAGCTCAAAGGAGAAGAAGCGGTGG 614
| || |||| || |||||||| |||| ||||||||| | | |||||||||||||||||
Sbjct 493 TG-CGGCGAGGAGAGAGCTGTTGTTGAGTGGGAAGAAGATTAGAGGAGAAGAAGCGGTGG 551
Query 615 CTCTCGGGATCGTGGACTCAGCGGCGCATGATAGTGCGGAAGGTGTGGTGGAGGCTACAG 674
| | ||||| || ||||| |||||| ||||||||| ||||||||| || ||||||| |
Sbjct 552 GTTTGGGGATTGTTGACTCGGCGGCGTATGATAGTGAGGAAGGTGTTGTTGAGGCTAGTG 611
Query 675 TGAGCCTTGG--AGAAAGTTTGGCCGCT-AAGAAATGGAATGGTGAGGTGTATGCAACCA 731
|| ||||||| ||||| || | | | | |||||||||| ||||||||| ||||| | |
Sbjct 612 TGCGCCTTGGTGAGAAA-TTAG-CGG-TGAAGAAATGGAGTGGTGAGGTTTATGCGTCGA 668
Query 732 TTAGGAAGAGTTTGTATCCGGAGCTTTGTCGGATGGTTGATTTA 775
||||||||||||||||||||||||||||| |||| ||| ||||
Sbjct 669 TTAGGAAGAGTTTGTATCCGGAGCTTTGTGGGATTCTTGGTTTA 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37512950328
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5