BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G14450.1

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946933 jgi|Araly1|946933|scaffold_703162.1                        412    1e-114


> Ahg946933 jgi|Araly1|946933|scaffold_703162.1
Length=358

 Score =  412 bits (223),  Expect = 1e-114
 Identities = 297/332 (89%), Gaps = 8/332 (2%)
 Strand=Plus/Plus

Query  83   TTCACAAATCTATCTCCATGGCGTCCACGATGCAAAGAACAAGCAGCTCCGCGGCCAGTA  142
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |
Sbjct  4    TTCACAAATCTATCTCCATGGCGTCCACGATGCAAAGAACAAGCAGCTCCGCAGCCAACA  63

Query  143  ACGAGAGGCAACTTAGCCAGCTACAGAGACGAGCTCCGTCTTTAATGATCAAACCAACGT  202
            |||||| ||||| |||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct  64   ACGAGATGCAACATAGCCAGCTACAGAGACGAGCTCCGTCTTTGATCATCAAACCGACGT  123

Query  203  CTTTTAGTAACTGGAACGTGGCGATCCCTCTCCTTTCACCGCTCGCTCCTTCTCTAACAT  262
            |    | ||| |||||| ||||||||||||||||||| ||||| |||| ||||| |||||
Sbjct  124  CG---ACTAATTGGAACATGGCGATCCCTCTCCTTTCGCCGCTAGCTCTTTCTCCAACAT  180

Query  263  CATCCTTCGACCAATCACATGTTCCTCCGCCGCAGAACAAGACTGAGATACCAGTGGAAG  322
            | || ||| ||||||| |||||||||||||| || ||||||||||||| |||||||||||
Sbjct  181  CGTCTTTCCACCAATCGCATGTTCCTCCGCCCCATAACAAGACTGAGAAACCAGTGGAAG  240

Query  323  AAGAGGTGAAGAAGACACCAGTTTTCAAGAAATGGCAACATCCCGCGTCGCCGTTCTGCT  382
            |||   ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct  241  AAG---TGAAGAAGACACCAGTTTTCAAGAAATGGCAACATCCGGCGTCCCCGTTCTGCT  297

Query  383  ACGAGCCA-ACAACGTTTGTCCCACCGTTCAT  413
            |||| | | || ||||||||||||||||||||
Sbjct  298  ACGAAC-AGACGACGTTTGTCCCACCGTTCAT  328



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21405285429


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5