BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G14455.1

Length=922
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946932 jgi|Araly1|946932|scaffold_703161.1                        664    0.0  


> Ahg946932 jgi|Araly1|946932|scaffold_703161.1
Length=437

 Score =  664 bits (359),  Expect = 0.0
 Identities = 395/413 (96%), Gaps = 0/413 (0%)
 Strand=Plus/Plus

Query  148  TGAACTTTCGAAGGGAGAATCGTGCTTCGAGAACGTCTCTCTTTGATGGCCTTGATGGAC  207
            |||||| ||||||||||||||||||||||||||||||||| || ||||| ||||| ||||
Sbjct  25   TGAACTATCGAAGGGAGAATCGTGCTTCGAGAACGTCTCTATTCGATGGTCTTGAAGGAC  84

Query  208  TTGAAGAAGGTCGCTTGAGAGCTTCTTCTTCGTATGCTCATGACGAACGTGATAATGATG  267
            ||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |
Sbjct  85   TTGAAGAAGGTCGCTTGAGAGCTTCTTCTTCGTATTCTCATGACGAACGCGACAATGACG  144

Query  268  AAGCTTTGGAAAATCTTCAGGACAGAGTTTCGTTTCTCAAGAGAGTGACTGGAGACATAC  327
            |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  145  AAGCGTTGGAGAATCTTCAGGACAGAGTTTCGTTTCTCAAGAGAGTGACTGGAGATATAC  204

Query  328  ATGAAGAAGTTGAGAATCATAACCGCTTGCTTGACAAAGTGGGGAACAAAATGGACTCCG  387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  205  ATGAAGAAGTTGAGAATCATAACCGCTTGCTTGACAAAGTGGGGAACAAAATGGACTCCG  264

Query  388  CGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTGGTCTTTGAGAAGAAGTCTA  447
            |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct  265  CGAGGGGGATAATGTCAGGAACGATCAACCGTTTCAAGTTGGTCTTTGAGAAGAAGTCTA  324

Query  448  ATCGAAAAAGTTGCAAACTCATAGCTTATTTTGTGCTCCTGTTCTTGATCATGTATTACC  507
            |||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct  325  ATCGAAAAAGTTGCAAACTCATTGCGTATTTTGTACTCCTGTTCTTGATCATGTATTACC  384

Query  508  TTATTAGGCTATTAAACTACATCAAAGGGTAAATTTGGATACAAGAAGAAAGT  560
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  385  TTATTAGGCTATTAAACTACATCAAAGGGTGAATTTGGATACAAGAAGAAAGT  437



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34196256549


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5