BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14465.1
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493459 jgi|Araly1|493459|fgenesh2_kg.7__2892__AT4G14465.1 1943 0.0
> Ahg493459 jgi|Araly1|493459|fgenesh2_kg.7__2892__AT4G14465.1
Length=1442
Score = 1943 bits (1052), Expect = 0.0
Identities = 1369/1509 (91%), Gaps = 73/1509 (5%)
Strand=Plus/Plus
Query 5 AAAATTAATTATTGCCCACTTtctctctctctctctctctGATTGATTCTTGAAAAGAAA 64
|||||||||||||||||| || | ||||||||| | |||||||||||| |||||||
Sbjct 2 AAAATTAATTATTGCCCA----CT-T-TCTCTCTCT-GC-GATTGATTCTTGGAAAGAAA 53
Query 65 ATCAAAGTCTCAATAGCTTTGTTTTGATTCTAGTTCCATTCCACAATTGCATCTAATTCT 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 54 ATCAAAGTCTCAATAGCTTTGCTTTGATTCTAGTTCCATTCCACAATTGCATCTAATTCT 113
Query 125 CCTACCGTAGCCTTTTCTTCTTTA--TTTGTCATCAACAACTCCTAAAATTCATATGAAA 182
|||||| ||||||||||||||||| ||| |||||| ||||||||||| ||| || |
Sbjct 114 CCTACCTTAGCCTTTTCTTCTTTACTTTTATCATCATCAACTCCTAAATTTC--AT---A 168
Query 183 TTAGAGAAATCGAAACGAAAAGATAATATTTTTCAAGAAAGAGCTACATATACACCTTTT 242
| |||| | | | || || || ||||||||||||| | |||| |
Sbjct 169 -T---GAAA-C--TA-G---AG--AA-ATCTTTCAAGAAAGAG---C---TACA-----T 203
Query 243 GACCTTGTAAAGTTGGAACCCTAGAGGCCTTTCAAGCAAATCATCAGGGTAACAATTTCT 302
| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 204 -A--TTGTAAAGTTGGAACCCTAGAGGCCTTTCAAGCGAATCATCAGGGTAATAATTTCT 260
Query 303 TGATCTTTCTTTTTAGCGAATTTCCAGTTTTTGGTCAATCATGGCAAACCCTTGGTGGAC 362
|||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 261 TGATCTTTTTTTTTAGTGAATTTTCAGTTTTTGGTCAATCATGGCAAACCCTTGGTGGAC 320
Query 363 GAACCAGAGTGGTTTAGCGGGCATGGTGGACCATTCGGTCTCCTCAGGCCATCACCAAAA 422
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 321 GAACCAGAGTGGTTTAGCCGGCATGGTGGACCATTCGGCCTCCTCAGGCCATCACCAAAA 380
Query 423 CCATCACCACCAAAGTCTTCTTACCAAAGGAGATCTTGGAATAGCCATGAATCAGAGCCA 482
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TCATCACCACCAAAGTATTCTTACCAAAGGAGATCTTGGAATAGCCATGAATCAGAGCCA 440
Query 483 AGACAACGACCAAGACGAAGAAGATGATCCTAGAGAAGGAGCCGTTGAGGTGGTCAACCG 542
||| ||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct 441 AGATAACGACCAAGACGAAGACGACGATCCAAGGGAAGGAGCCGTCGAGGTGGTCAACCG 500
Query 543 TAGACCAAGAGGTAGACCACCAGGATCCAAAAACAAACCCAAAGCTCCAATCTTTGTGAC 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TAGACCAAGAGGTAGACCACCAGGATCCAAAAACAAACCCAAAGCTCCAATCTTTGTGAC 560
Query 603 AAGAGACAGCCCCAACGCACTCCGTAGCCATGTCTTGGAGATCTCCGACGGCAGTGACGT 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 561 AAGAGACAGCCCCAACGCACTCCGTAGCCATGTCTTGGAGATCTCCGACGGCAGCGACGT 620
Query 663 CGCCGACACAATCGCTCACTTCTCAAGACGCAGGCAACGCGGCGTTTGCGTTCTCAGCGG 722
|||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 621 CGCCGAGACAATCGCTCACTTCTCTAGACGCAGACAACGCGGCGTTTGCGTTCTTAGCGG 680
Query 723 GACAGGCTCAGTCGCTAACGTCACCCTCCGCCAAGCCGCCGCACCAGGAGGTGTGGTCTC 782
||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||
Sbjct 681 AACAGGCTCAGTCGCTAACGTCACCCTCCGTCAAGCCGCGGCACCAGGAGGCGTCGTCTC 740
Query 783 TCTCCAAGGCAGGTTTGAAATCTTATCTTTAACCGGTGCTTTCCTCCCTGGACCTTCCCC 842
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 741 TCTCCAAGGCAGGTTTGAGATCTTATCCTTAACCGGTGCTTTCCTCCCTGGACCTTCCCC 800
Query 843 ACCCGGGTCAACCGGTTTAACGGTTTACTTAGCCGGGGTCCAGGGTCAGGTCGTTGGAGG 902
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 801 ACCCGGTTCAACCGGTTTAACGGTTTACTTAGCCGGGGTCCAAGGTCAGGTCGTTGGAGG 860
Query 903 TAGCGTTGTAGGCCCACTCTTAGCCATAGGGTCGGTCATGGTGATTGCTGCTACTTTCTC 962
|||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 861 TAGCGTCGTAGGACCGCTCTTGGCCATAGGGTCGGTCATGGTGATTGCTGCTACTTTCTC 920
Query 963 TAACGCTACTTATGAGAGATTGCCCATGGAAGAAGAGGAAGACGGTGGCGGCTCAAGACA 1022
|||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct 921 TAACGCTACTTATGAGAGATTGCCTATGGAAGAGGAGGAAGACGGTAGCGGCTCAAGACA 980
Query 1023 GATTCACGGAGGCGGTGACTCACCGCCCAGAATCGGTAGTAACCTGCCTGATCTATCAGG 1082
||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| ||
Sbjct 981 GATTCACGGAGGCGGTGACTCGCCGCCCGGAATCGGTAGTAGCCTGCCTGATCTATCGGG 1040
Query 1083 GATGGCCGGGCCAGGCTACAATATGCCGCCGCATCTGATTCCAAATGGGGCTGGTCAGCT 1142
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1041 GATGGCCGGGCCAGGCTACAATATGCCGCCGCATCTGATTCCAAATGGGGCTGGTCAGTT 1100
Query 1143 AGGGCACGAACCATATACATGGGTCCACGCAAGACCACCTTACTGACTCAGTGAGCCATT 1202
|||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct 1101 AGGGCACGAACCATATACATGGGTCCACGCGCGACCACCATACTGACTCAGCGAGCCATT 1160
Query 1203 TCtatatataatggtctatataaataaatatatagatgaatataaGCAAGCAATTTGAGG 1262
|||| | || | |||||||||||||||||||||||||||||||| | | |||||||
Sbjct 1161 TCTA-A-ATG-T--TCTATATAAATAAATATATAGATGAATATAAGT--G-A-TTTGAGG 1211
Query 1263 TAGTCTATTACAAAGCTTTTGCTCTGGTTGGAAAAATAAATAAGTATCAAAGCTTTGTTT 1322
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1212 TAGTCTATTACAAAGCTTT-GCTCTTGTTGGAAAAATAAATAAGTATCAAAGCTTTGCTT 1270
Query 1323 GTTCTTAATGGAAATATAGAGCTTGGGAAGGTAGAAAGAGACGACATTAAGGGACTTTCA 1382
||| |||||||||| ||| | || ||| || | || | |||||||||||
Sbjct 1271 GTTATTAATGGAAA-ATACA-------AA---AGAC-GA-A--AC-T-AAGGGACTTTCG 1313
Query 1383 GATTTTCAGTAT--T-ACTACTCCACGAAATTATTGAAATAAATAAACATTGTACTGTAA 1439
|||||||||||| | ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1314 GATTTTCAGTATCATTACTACTCCACGAAGTTATTGAAATGAATAAACATTGTACTGTAA 1373
Query 1440 ATTAGAAtgtttgtctttttgtttttgtgtagtagtatttaactacaatatttgtatgtg 1499
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1374 ATTAGAATGTTTGTCTTTTTGTTTTTGTTTAGTAGTATTTGACTACAATATTTGTATGTG 1433
Query 1500 tttgccttt 1508
||| |||||
Sbjct 1434 TTTTCCTTT 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58887518770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5